Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                         --------->ARR11(3)                                 --------->CCA1(2) <---------ICU4                                <---------ARR11(3)<---------YAB1                           <---------                                --------->ARR11(3)--------->ICU4                      <---------RVE1(1)                            ---------->DOF2     --------->YAB1                       --------->ARR11(3)                      --------->ANAC58         <---------YAB1                        <---------ARR11(3)                      --------->ANAC58        --------->AHL20(2)                    <------ZmHOX2a(1)                  <---------ANAC55(2)        --------->CCA1(2)                =======================                  --------->ANAC55(1)       <---------ARR11(3)                =============HOX2a_HOX2a -------->YAB1    --------->ANAC46   <---------TOE2(3) --------->GLK1(2)      <------ZmHOX2a(2) -------DOF2      --------->ANAC58  ---------->DOF2--------->YAB1            --------->ARR11(3)  ---- ---ARR11(3)      --------->ANAC58 <---------AHL20(2) --------->YAB1         <---------ARR11(3)  <---   tttcatagctctgagagaacacgcaaacaaaaaagatttaaagatagatataataataatcttgaaacattgaagagaagatcaaaggattttttacctt  10944300                                                                                      <---------HSFB2a(1)                                                                                      --------->HSFC1(2)                                                                                      --------->HSFB2a(1)   <------ZmHOX2a(1)                                   <------MYB46(1)                <---------HSFC1(2) <---------TOE2(3)                                     <------MYB83                  <---------------AtSPL8 --GT1                                                <---------AtMYB61 --------->ANAC58 =========HOX2a_HOX2a            ---------->DOF2   <-----------RAV1(1)  --------->ANAC58 <-------TEIL ----->ZAT2                 --------->CCA1(2)    <----------DOF2        <---------MYB52(2) ------ZAT2            ----------->GT1   ---------->DOF2   <----------DOF2------------>AtMYB77    <--   gctgaggaagaagatgagaagagagttgtgatatgaaaagagataaagagtctttgttggtcttttaagtagccacgaacagttacgaaggtacgttttt  10944400                                                                                           <---------                                                                                          <---------CCA1(2)                                                                                        --------->AHL20(2)                                <-------TEIL                                            <---------AHL20(2)                        <----------DOF2                                             <---------AHL20(2)                  <---------ARR11(3)        <---------AHL20(2)                     --------->ARR11(3)            --------->YAB1 --------->AHL20(2)                   --------->AHL20(2) <---------AHL20(1)  <---------CCA1(2)  <-----------GT1   <---------TOE2(3)  ----------->GT1     ----------->GT1 ---------GT1     --------->ARR11(3)  <-----------GT1 ---------->DOF2<-------TEIL  <---------ARR11(3)   tttcatctcttcatttataagatttacttttaaatacatttaacatttttttgttttaaagggttttaaaatacattaagttgtatatatttatatccat  10944500                               <---------ARR14(2)                            <-------TEIL          --------------->AGL15--------->GLK1(2)                   --------->GLK1(2)          <---------------AGL15------->TEIL    --------->ARR11(3) --------->ARR14(2)         --------    <---------ICU4<------ZmHOX2a(1)            <---------ARR11(3) <---------ARR14(2)  --------->ARR11(3) --GT1   ----------------->AG  --------->ARR14(2)     --------->ETT(2)----------->GT1 <---------ARR11(3)   tttcgataatttccctaagaggatgaatagacgaatcggtgcaagagaagatgttgtcgatattaggcgattcggaaaattcatcgaagatgttgtcgat  10944600                                                      <---------TOE2(3)                                                --------->YAB1                                               <---------ATHB12                                               <<<<<<<<<ARR1                                         <----------ID1                <-------TEIL             XXXXXXXXXXXXXXXXXXXX>MIR823                              ---      --------->GLK1(2)                  --------->ANAC58                                        <---     <---------ARR14(2)                  --------->ANAC58              ---------->DOF2       <-------     --------->ARR14(2) --------->DEAR3(2)     <<<<<<<<<ARR2    --------->AHL20(2)         <--------- ->ETT(2)----------->GT1--------->MYB46(3)   --------->WOX13(1) <---------AHL20(2)       ------->TEIL   attaggcgattcggaaaattcatcgaaccgatggtagtcaagaacgacaatcatataagattagaattaattctaaagaaggaagacaatgtactttgat  10944700                                                    <---------------AGL15                                                    --------------->AGL15                                                   <-----------------AG                        ---------->DOF2  <---------ICU4                                       <<<<<<<                  <------------CBF      <-------TEIL--------->ZAT6                           <------MYB46(1) ------>ATHB12   --------->ATHB12   --------->ARR14(2)  --------->YAB1                       <------MYB83 ----TEIL       <---------YAB1      <---------ARR14(2) <---------ATHB12                  --------->ATHB12 --YAB1   <---------TOE2(3)      <---------ANAC46<-----------GT1 <------ZmHOX2a(1)     <---------WOX13(1) -DOF2  *TSS  <----------DOF2<------------CBF  <----------DOF2  <---------YAB1        <------------CBF   tcattagcgaataaggctttcattgcaaaagcattgtgtatattcatttctttaccactcatggttaggattaatagacattctcgctgattgtttggtt  10944800                                       --------->AHL20(1)                                       <---------AHL20(2)                                       --------->AHL20(2)                                --------->bZIP60(1)                                <---------TGA2(1)                                --------->REM1(1)      <---------WOX13(1)              --------->AHL20(2)<---------bZIP60(1)  --------->ATHB12       --------->ICU4<---------ANAC46  <---------AHL20(1)                                        ----       <---------ATHB51    --------->ANAC46--------->YAB1<-----------GT1  --------->YAB1  ---------->DOF2 <<<MYB80 <---------YAB1   --------->ANAC55(2)<-----------GT1            <---------YAB1--------->YAB1   tgatatgaaattatgaataaatgtcttatacgttacatcattttattgtaactcttgatttactcattcggttttatcatagaagtcatttataaagact  10944900                                                                               <------ZmHOX2a(2)                                                                              --------->ARR11(3)                                                                              <---------ARR11(3)    -                                                    ----------->GT1    <-------TEIL             <----   <---------TOE2(3)                      ------>MYB46(1)            --------->At5g28300     <-------   <---------TOE1(3)                      ------>MYB83              ------->GAMYB      --------->GLK1(1) ------->GT1                            <---------MYB59          --------->MYB52(1)    <---------GLK1(1)   tgtttaaagttttatttatcaaatgcttcttacacattcagaccaaatcgagagatgtaaaatgttccaacggtacataagatcatatgaaatccctttt  10945000                               --------->DEAR3(1)                 --------->YAB1                               --------->RAP2.6(2)               <------ZmHOX2a(2)                               ------->GAMYB                    --------->ARR11(3)                               --------->ANAC46                 <---------ARR11(3)                   --------->LBD16                           --------->HSFB2a(2)            <---------MYB52(2)<------------AtMYB77           <---------HSFB2a(2) ---------->GT1  <-----------RAV1(2)                     <----------DOF2       ---------->DOF2 -----AtMYB61  ------->TEIL   --------->MYB46(3)  <---------HSFB2a(2)      <-------GAMYB ---DOF2  --------->MYB52(1)  --------->DEAR3(2)  --------->HSFB2a(2)     ----------->GT1   ggtggaaaaaaaaaacgaaccaggggaatcaaaccgccattttcaaacgtttctagagtctttccagatcataagtctgttaaaagagtctaaaaaaaac  10945100                                                                                             <-------                                    ------>ZmHOX2a(1)                                        <-------                                   --------->TOE2(2)                                         --------                                   --------->TOE1(2)                                        ---------                           <------ZmHOX2a(1)                                                <--------             =====================HOX2a_HOX2a         --------->ANAC58                      <--------             ==============================HOX2a_HOX2a--------->ANAC58                 --------->ANAC58             <------ZmHOX2a(2)     --------->TOE2(3)---------->DOF2                    --------->ANAC58   ---------->DOF2        ----------->GT1<---------YAB1                              ---------->DOF2   tgagcaaaagcttggatcatatgtacagaggaaaaatcctaagattattaagaagaaagcaaaccaaaatccaaactaaatcgaacacaaagcaataatt  10945200  Previous    Next  AGI:  At1g30814.1    Description:  contains InterPro domain Zinc finger, LSD1-type (InterPro:IPR005735) Range:  from: 10942629    to: 10944708    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g30820.1    Description:  CTP synthase, putative / UTP--ammonia ligase, putative. similar to CTP synthase [Arabidopsis thaliana] (TAIR:AT4G20320.1); similar to EMB2742 (EMBRYO DEFECTIVE 2742), CTP synthase [Arabidopsis thaliana] (TAIR:AT3G12670.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G20320.2); similar to putative CTP synthetase [Oryza sativa (japonica cultivar-group)] (GB:BAD61286.1); similar to hypothetical protein OsI_020347 [Oryza sativa (indica cultivar-group)] (GB:EAY99114.1); similar to Glutamine amidotransferase, class I, active site [Medicago truncatula] (GB:ABN08198.1); contains InterPro domain Glutamine amidotransferase, class I, acti Range:  from: 10944894    to: 10949439    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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