Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                    --------->ATHB12                                                                 <---------YAB1        --------->ARR14(2) -----AHL20(2)                                                 <---------ZAT6       <---------ANAC55(2) ----AHL20(2)                                              <---------YAB1           --------->ANAC55(2) --->AHL20(2)                                            <---------ICU4             --------->ANAC46 ---YAB1                                                 --------->YAB1            <---------LBD16 -ICU4                                                  --------->ICU4          <----------DOF2   aatgatacaaaaactttgaaattcaaatagtagttttttttttgcgaaatgagtcttcatcatgagtgttattggtttaagcctttacggaaacacttga  10926100                                                                                               ------                                                                             --------------->AGL15                                                                             <---------------AGL15                                                                            <-----------------AGL2                                                                            ----------------->AGL3                                                                            <-----------------AGL3  <                                                                            ----------------->AGL2 <-                                       <---------CCA1(2)                    ------>ZmHOX2a(2)  <-----          <--------P          ------>NtERF2<---------LBD16                --------->AGP1     <-------        <---------ANAC46     --------->ZAT18                        --------->ZAT18         <--------   <---------ANAC58          <---------ZAT18                      --------->At4g35610       <--------   <---------ANAC58        <---------At4g35610                    <---------At4g35610       <--------   <---------ANAC46        --------->At4g35610                  ===================HOX2a_HOX2a<------NtERF2  --------->ATHB12        --------->MYB52(1)                    <------ZmHOX2a(1)     ---------->DOF2   gggatgcttggggtagaaggcatccaattagcggactcatcaaatctcggagcgaagccttggtaaggagcagactgatctacaaatggaaagggcgggt  10926200                                                                --------->ALFIN1                                                               <-------GAMYB                                                               <------NtERF2                                                              <---------DEAR3(2)                                                              <---------MYB46(3)                                                             <---------DREB2C(2)                                                             <---------DEAR3(1)                                                             --------->ALFIN1                                                            <---------ABI4(1)                  ------                                                            <------NtERF2                    <------NtERF2                                                            --------->ATERF1(1)              --------                                                           ------>NtERF2                     --------                                                           <---------RAP2.3(1)              ------>NtERF2                                                           --------->LBD16                  <--------                                                           <---------ERF1                   <--------                                                           <---------ATERF1(1)              <--------                                                          <---------DEAR3(1)                <--------                                                          <---------RAP2.3(3)               <--------                                                          <---------RAP2.3(2)               <--------                                                          <---------ATERF1(2)               <--------                                                          <---------RRTF1(2)               <---------DEAR3(1)                                                          <---------RRTF1(3)               <---------RAP2.3(2)       --------->ALFIN1                                   <---------DREB2C(2)              <---------RAP2.6(2)     <---------ANAC46           --------->TOE1(2)         <---------RAP2.6(2)              <---------RRTF1(3) <---------LBD16                --------->TOE2(2)         --------->ATERF1(2)              <---------RAP2.3(3) --->ARR14(2)         <---------ARR14(2)                 <---------LBD16                   --------->ALFIN1 ---------LBD16       --------->ARR14(2)                 --------->RAP2.6(3)               <---------RRTF1(2) --------LBD16      --------->LBD16                     --------->MYB52(1)                <---------ABI4(1) ----ARR14(2)     <---------LBD16 <---------TOE2(2)  <---------GLK1(1)                 <---------At4g35610 --MYB46(3)       <-----------------AGL1             --------->GLK1(1)                 --------->At4g35610 -ANAC46          ----------------->AGL1            --------->ARR14(2)        --------->bZIP60(2)   < -ANAC58        <---------ARR14(2)<---------TOE1(2) <---------ARR14(2)       <-------TEIL --------->ATERF1(1) -ANAC58   <----------ID1  <---------MYB52(1)      <------ZmHOX2a(1)  <------ZmHOX2a(1)<------NtERF2=   actcggggagtgaaggccaaaccggaaccggtaacctaggtttctcaaaatcaggaaatgccggcggtggaaggagaggcacatcaggcagaggcggcgc  10926300                                --------->ATERF1(1)                                <------NtERF2                               ------>NtERF2                              --------->PCF2                              <---------PCF2                             <------NtERF2                             --------->ATERF1(1)                            <---------RAP2.3(1)                          --------->ATERF1(1)                         --------->MYB55(2)                         <---------MYB46(3)                         --------->ABI4(2)                        --------->ALFIN1                        <---------AtMYB61                       <------NtERF2                       <-------GAMYB                       <---------ABI4(1)                     <---------DEAR3(1)                     <---------DREB2C(2)                     --------->ALFIN1                    <---------ABI4(1)                    --------->ATERF1(1)                    <------NtERF2                  <---------DEAR3(1)         <---------ARR14(2) <---------ATERF1(1)         --------->ARR11(3)<---------RAP2.3(3)     <------ZmHOX2a(1)<---------DEAR4(2) >NtERF2 <---------ARR11(3)<---------DEAR3(1) ->ATERF1(1)      --------->ALFIN1                                           --------->WRKY12 ->RAP2.3(1)     <------NtERF2<---------bZIP60(1)                            ----------->HVH21 -RAP2.6(1)     <---------ATERF1(1)      <---------ANAC46                    --------->WRKY38(1) -ATERF1(1)    --------->ALFIN1<---------RAP2.3(1)                        <---------ANAC58 -ORA47(2)     <---------DEAR3(1)<---------ALFIN1                         <---------ANAC58 -RAP2.3(1)   <---------LBD16--------->RAP2.3(1)                          <---------ANAC46 -ERF1 ----------->ARR10<---------DEAR3(1)                               --------->ALFIN1 -RRTF1(1) <-----------RAV1(2)--------->bZIP60(1)                --------->GLK1(2) -DEAR4(2)<------ZmHOX2a(2)--------->ALFIN1                      <---------ARR14(2) ------ZmHOX2a(1)--------->ATERF1(1)   <----------DOF2          --------->GLK1(1) ================HOX2a_HOX2a<---------ERF1    ---------->DOF2   <---------GLK1(1) ----------->GT1   taggagaggaagatcaggcggaggcggtggtggcgccactgcttcttggaaagaagggaagtcagggaatccaaggtcgtggaccggtgtattacgacca  10926400                 ------>NtERF2               ------>ZmHOX2a(2)               <---------At4g35610          <------ZmHOX2a(2)               --------->ATERF1(1)          --------->GLK1(1)               --------->At4g35610          <---------GLK1(1)               <------NtERF2               <---------ARR11(3)              <---------RAP2.3(1)          --------->ARR11(3)              ------>NtERF2            --------->ALFIN1              <---------ATERF1(1)    <---------ANAC46              <---------DEAR3(2)     <---------ANAC58             <---------DEAR3(1)      <---------ANAC58             <---------RAP2.3(3)<----------DOF2           <-----------HVH21    <---------DAG2   --------->ZAT14              <----------DOF2   ----------->GT1         <---------At4g35610   <---------ZAT14       <----------DOF2   gaagatggataatcgtcggctccaatctgagctactttagcgtgggatctctgtagtcgtgaagaaaatgtttctttgggcttttggagtatgaagaaac  10926500                                                                <---------TOE2(3)                                                            <-------GAMYB                                                           --------->ALFIN1                                                         <---------ANAC58                                                         <---------ANAC58            <---------ARR11(1)                          <---------MYB46(3)            ------->TEIL                           <---------ANAC58                       <---------ZAT6            <---------ARR14(2)                     --------->ALFIN1                      <---------TOE2(3)            --------->ARR14(2)     >>>>>>>>>>>>>>>>>LFY--------->ALFIN1        --------->YAB1           <---------CCA1(2)      --------->bZIP60(1)<-----------RAV1(1)       --------->ANAC55(2)         <---------ANAC55(2)      <---------bZIP60(1)--------->ALFIN1         ---------->ID1 ---------->DOF2           ---------->DOF2         <---------ANAC58       <----------DOF2<---------TOE1(3)   tcaaaaagacgacgtatctaagaacaagtgaaagtgatgccattgtatttagtgtgtgtgggtgttgatgtttagtctttttcgtaattttagggttact  10926600                                      ----------->GT1                                      --------->YAB1                                    <------------CBF                              <---------WOX13(1)                             <---------ANAC58                             <---------ANAC58                         <------------CBF             <---------YAB1                      ------->MYC2                        --------->ATHB12            --------------->AGL15          ---------->DOF2         <---------AHL20(2) <---------MYB46(3)<---------ICU4               <----------DOF2<-------MYC3        --------->AHL20(2)<---------WOX13(1)<-----------ARR10<---------AtLEC2     --------->AtMYB61 <        <-----------TBP--------->AHL20(2)   --------->ARR11(3)          ------>ZmHOX2a(1) ------->MYC3   <-------TEIL <----------DOF2  ------------>CBF   <---------------AGL15  <---------DAG2 <-------MYC2  --------->CCA1(2)    <---------AHL20(2)   <---------ARR11(3)<------------CBF <-----------GT1      <   gaagattcaaatttatagctttgaattaattggttgacaattgtaaaatctttgctattatttgcattgtgttcctacttttcaccaaagcatatgctaa  10926700                                                                                     ------->GAMYB                                                                                    --------->ANAC46                                                                                   --------->At4g35610                                                                                  <---------DOF5.7(2)                                                                                  --------->MYB52(1)                                                                                 <---------WRKY12                                                                                 <---------WRKY38(1)                                                                                 <---------WRKY45                                                                                --------->WRKY18(1)                                                                               <-----------HVH21                                                                              <------MYB46(1)                                                                              <------MYB83                                  =========================HOX2a_HOX2a       --------->MYB59                                  <------ZmHOX2a(1)                      -------->ATHB1                    <-----------TGA1                       <---------YAB1--------->ATHB12                    <-----------HVH21                    --------->YAB1  --------->ATHB51                   --------->ANAC58                 ------------>CBF     <---------ICU4          ---------->DOF2  <---------WRKY12         <------ZmHOX2a(2)   <---------AHL20(2)    <---------AHL20(2)   <-----------HVH21         <---------ARR11(3)   --------->AHL20(2)         -- ---------DAG2     --------->ANAC58            ---------->DOF2          <---------ATHB51       ------ ----------DOF2    --------->ANAC46<---------ANAC46--------->ARR11(3)   --------->ICU4    --------->MYB46(3)   tacttttttattcaaagtcaaacgtcatgtcaacgaggagtgttttgaccaaagatcaattttgataaatcgaaattattaggtcaacggcaacgaataa  10926800                                                                                <-----------GT1 <----                                                               --------------->AGL15            =====                                                               <---------------AGL15            -----                                                              ----------------->AG              <----         <---------ZAT18                                      <-----------------AG       ============      <---------ANAC46                                        <-----------------AGL1     ============      <---------ANAC58                         <-----------------AGL1        --------->YAB1    ======      <---------ANAC58                        ------>MYB46(1) ----------------->AGL1     ------>ZmHOX2a(1)     --------------->AtSPL3                   --------->MYB52(1)             <---------ICU4 <--------     --------------->AtSPL8                   ------>MYB83    <-----------------AGL2  <------ZmHOX2a(2)  <----------DOF2                     --------->TOE2(3)<----------ID1      --------->AHL20(2)  <----- <---------DAG2      --------->ARR11(3)     <---------MYB59 --------->MYB52(1)  --------->MYB52(1) <- ----->TEIL --------->ANAC46     <---------WOX13(1)   --------->MYB59 ----------->GT1--------->ARR14(2) --->YAB1--------->ZAT14      <---------YAB1--------->AtMYB61<-----------------AG    <---------ARR14(2)   gaaccttttcgtacacactatatggtcttgttttgattaatctaaaccaaaccgattaggccaaaccgattagggaaaataataaccgatccttacgatc  10926900 -----ANAC58            --------->MYB46(3) ===========================HOX2a_HOX2a ->ZmHOX2a(2)          >>>>>>>>>MYB98 -----ANAC58         ------>ZmHOX2a(1) ==HOX2a_HOX2a <<<<<<<<<MYB2 =HOX2a_HOX2a<------MYB83                                                                --------->AtLEC2 ===========================HOX2a_HOX2a                                            --------->MYB59 -YAB1----------->RAV1(1)             <---------------AtSPL8                  --------->DAG2 -ZmHOX2a(2) <------MYB46(1)          <---------------AtSPL3                 ---------->DOF2 ----------HVH21    <---------MYB59   <---------ICU4                  <----------DOF2<------ZmHOX2a(1)   gtgtcaaacaacatttggttttcctaacaaacaattcaaataagtactgaaactaattagcagtaagtgtttctttcaaaaaagttaggacatacaaaat  10927000  Previous    Next  AGI:  At1g30780.1    Description:  F-box family protein. similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G30790.1); contains InterPro domain F-box associated type 3 (InterPro:IPR013187); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 10923901    to: 10926543    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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