Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             --------->ANAC58           --------->ANAC58           ----------->GT1           <---------ANAC55(2)  <---------AHL20(2)  --------->AHL20(2) -------YAB1 ------AHL20(2) ----->AHL20(1) ------AHL20(1) ----->AHL20(2) ---->AHL20(2) -----AHL20(2) ---->YAB1 --------->ANAC55(2)                                                             --------->ANAC46 ------>AGL15             --------->ANAC55(2)      ----------->GT1            --------->AHL20(2) -------AGL15             <---------ANAC55(2)   ---------->DOF2               <---------AHL20(2)----- -YAB1<---------------AtSPL8         ----------->GT1                 <-----------GT1 ------->TEIL----   atattaaaatgggacgtaatttagaattaagtgataactctgtaaaattagaaaggaaacaaaacaaaataaaaccatattaaaatgaatttcacacaaa  10887300                                                                 <---------ANAC46                                                                 <---------ANAC58                                                                 <---------ANAC58                                                                 <---------bZIP60(2)                                                                 ----------->GT1                                                              ----------->HVH21                                                             ------->MYC3                                 <------NtERF2               <-------MYC3                                 --------->ORA47(2)          ------->MYC2                                ------>NtERF2                <-------MYC2                               <---------ANAC46              ------->MYC4                    <-------                            <---------MYB52(1)               <-------MYC4                   <-------GAMYB                           ===========================================MYC_MYB               =========                           <-------GAMYB                     ------->PIF5                  <---------MYB46(3)                          --------->MYB52(2)                 <-------PIF5               ------>NtERF2                          <---------MYB46(3)                ========================================MYC_MYB                        <---------MYB52(1)                  <---------ANAC55(2)        --------->MYB46(3)                       <-----------HVH21                    --------->O2               ----------->HVH21                   <-----------GT1--------->DEAR3(1)        --------->ANAC55(2)        --------->DEAR3(1)                   --------->ARR14(2)                       <---------TGA1a         --------->DEAR3(1)          ----------->GT1--------->SPL7                     <---------O2     <------ZmHOX2a(2)    <----------DOF2<---------ARR14(2)                       --------->TGA1a --------->ARR14(2) ----->DOF2      --------->ARR11(3)           <-----------HVH21<-----------HVH21--------->At4g35610 ----->DAG2      <---------ARR11(3)    --------->KAN4(2)  <---------ALFIN1  <---------ARR14(2)   aagtgactttggtagtgaatatatccgtccgttgcgccgaacatactctgtcgaatagcaccacgtgtcgtgtaaacagatcagcatcgacgaccgttga  10887400                        --------->AtMYB61                        <---------MYB59                     <---------PCF5                     --------->TCP15(1)                  --------->ALFIN1                --------->AHL20(2)                 --------->TOE1(2)            <---------AHL20(2)                 <-------MYC3                 --------->AHL20(2)         --------->AHL20(1)                 ------->MYC3                <---------AHL20(2)    --------->ANAC58                 --------->TOE2(2)           --------->AHL20(2)    <---------ANAC55(2)                <---------TGA1a   <---------YAB1  <---------AHL20(2)--------->TOE2(3)                --------->TGA1a  --------->ARR11(3)                --------->ANAC55(2)                <---------O2     <---------AHL20(1)                --------->ANAC58                ===============================bZIP_DOF            ----------->GT1   --------->TOE1(2) <---------PCF2 <----------DOF2      <---------ANAC58<---------AHL20(2)     ----- --MYB52(1)     --------->O2    <---------CCA1(2)<---------AHL20(2)<---------ANAC46             ----- =========================MYC_MYB<---------ARR11(3)      <---------ANAC58<---------AHL20(1)     <----   gagaacatgagaagcgaaacgtgggacctcaccaatatctttgtttattaatttatatttcttggtgctacgtaaaatatttgttctgcgattttgagaa  10887500                                                 <------MYB83                                                 <---------MYB46(3)                                                 <---------DEAR3(2)                                                 <------MYB46(1)                                                <---------AtMYB61                                                --------->MYB111(1)                                              <-------GAMYB                                             <---------MYB46(3)                                             --------->MYB55(2)                                   <--         <------NtERF2        <------ZmHOX2a(2)<--------P                                        <---        ----------->GT1    <------MYB46(1)  --------->ALFIN1                                     ----     <---------ZAT2        <------MYB83     <---------AtMYB61              --------->WOX13(1)--------     --------->ZAT2      <--------P       <---------MYB46(3)          <------MYB83----------->HVH21  <-----------RAV1(2)  <---------ZAT2 --------->MYB46(3)              <------MYB46(1)   <---------MYB52(1) ---->GLK1(2)        <-----------RAV1(2) <---------DEAR3(1)         <--------P  --------->ANAC55(2) ---->ARR14(2)     ------>NtERF2    --------->MYB52(1)           <---------ZAT6 <---------ANAC55(2)<- -----ARR14(2) --------->ALFIN1   --------->MYB46(3)       <---------ICU4 <-------TEIL <-------GAMYB<   tttgccaggctggcaaattggggccaggttggatcatccaacggctgtggttggttcttcatgtttactggtagggtccatcatgtgaccgttgctaagg  10887600        <---------ALFIN1        --------->AtMYB61     <---------PCF5    --------->WRKY38(1)    --------->ZAT18   --------->ALFIN1 --------->ALFIN1 <---------ANAC46 -------DEAR3(1)                                                                                ----- ------ABI4(1)                ---------->ID1                         ------>ZmHOX2a(1)         ------ ----->ZAT18                  <-----------GT1          <----------DOF2                        ------- ->MYB52(1)                  <-----------GT1  <---------At4g35610 ------>ZmHOX2a(1)      <-----------GT1 --------DEAR3(2)    <---------TOE1(2)      --------->DAG2       <---------ALFIN1      *TSS <-------- ------NtERF2       ------>ZmHOX2a(1)      ---------->DOF2     ------>ZmHOX2a(1)     <---------AHL20(2)   gcggtgtggaccacctctagtcctagggttttttccttctctgcataaagctcccttctttgttcctcctcctctctcttctcttatttattcacaaccc  10887700                                                                                                <----                                                                                           <---------                      --------->At4g35610                                   --------->GLK1(2)   -----                      <---------At4g35610                                   <---------ARR14(2)  <----                   <---------At4g35610                                     <---------GLK1(2)    -----                ----------->RAV1(2)                                  ---------->DOF2>>>>>>>>>TBF1----                --------->ZAT2<----------DOF2                     --------------->AGL15 --------->GLK1(2)                <---------At4g35610                               <---------HSFB2a(2)   --------->ARR11(3) ---->ANAC46    --------->At4g35610                               <---------------AGL15 <---------ARR11(3) ->GAMYB        <---------ZAT2--------->TOE1(3)                   --------->HSFB2a(2)   <-----------ARR10 -->MYB46(3)   <-----------RAV1(1)     --------->ZAT6            ----------------->AGL3<---------GLK1(2) -ALFIN1 <----------DOF2      --------->TOE2(3)            <-----------RAV1(2)  --------->LBD16<-----   cccattaatctctttctctgctgcagcttaaactttaaaaaacactacaagaacaacttcttcaggttctataaagagattccgaagaagaatcttttcc  10887800     <---------ZAT6             <---------MYB46(3) -----HSFB2a(2)                 <------MYB46(1) -DOF2                          <------MYB83                                 ------>ZmHOX2a(1) ---->HSFC1(1)                  --------->MYB52(2)                       --------->ARR14(2) -----HSFC1(1)                <--------P                     ----------->GT1 <---------DAG2 ---->HSFB2a(2)            <---------TOE2(3)   <-----------GT1   <---------AHL20(2) <---------------- ----->LBD16            <----------DOF2   <----------DOF2 --------->GLK1(2)  <----------DOF2 ----LBD16    <---------CCA1(2)<---------AtMYB61    <----------DOF2      <---------ARR14(2)   agaaacagtgtaagtcttatcttcttctttaggttggtttctctctttttctctctttagaagctgttaaattcgaatcctttttgggttttagttctat  10887900                                         --------->HSFC1(2)                     --------->AHL20(2)  <---------HSFC1(2)             --------->HSFB2a(2)  --------------------->WRI1                             ---------->DOF2         <---------GLK1(1)  >>>>>>>>>GATA-1               <------MYB46(1)   <------ZmHOX2a(1)       --------->ATHB12   ----------->GT1<---------HSFB2a(1)               --------->LBD16 --------ANAC81    --------->AHL20(2) ---------->DOF2     <------MYB83<----------DOF2---------->DOF2<   tgtctctcttgatttctcgatttttatatagataaacttagaaagcttcgaatttgagctaggtttctctcgccttcaggaaaaaaaaaaagaaagtttc  10888000                                                                                               <-----                        <---------At4g35610                                                    <-----          ------>ZmHOX2a(1)                                                                    <-----          --------->LBD16                          <-----------RAV1(1)                         <-----        ----------->RAV1(2)              --------->GLK1(2)                                <---------ICU4       ------>ZmHOX2a(1)--------->ZAT14 <---------ARR14(2)                   <---------TOE2(3) ------ <----------DOF2        <---------ZAT14 <---------GLK1(2)                    <---------TOE1(3) <----- ---------ICU4          --------->At4g35610 <---------ANAC46              <---------MYB52(1) <-------   aatcttttcctcctgagatttagttctgcagagttgaaattggattctgtgttatgttgtttgagttcgtttaatcgttagggtttatacaagaattacg  10888100                         <------ZmHOX2a(1)            ====================HOX2a_HOX2a            ------>ZmHOX2a(2)           =====================HOX2a_HOX2a           <<<<<<<<<GATA-2           <------ZmHOX2a(2)          <---------ARR11(3)          <---------AGP1 ====================================HOX2a_HOX2a          --------->ARR11(3)                           ------>ZmHOX2a(2) ----ANAC58<<<<<<<<<GATA-1                           <---------AGP1 ----ANAC46<<<<<<<<<GATA-3                           <---------ARR11(3) ----ANAC58<<<<<<<<<GATA-4                           --------->ARR11(3)                 <---------ZAT6 ----ANAC55(1)           =====================================HOX2a_HOX2a            >>>>>>>ZML2    - --->ANAC55(2)        --------->YAB1 <---------TOE2(3)<------ZmHOX2a(2)        <---------ICU4    <--- ----ANAC55(2)       <---------ATHB12<---------YAB1 <---------CCA1(2)   ----------->GT1<---------TOE1(3) ----GT1 <---------CCA1(2)   >>>>>>>>>TBF1     <----------DOF2         <---------TOE2(3)----------->GT1   tttttgattttagatctctactaatcaggaagaagaattaagcttgtttcttttagatctcaactaattcaacaaggttaattagttctagggttactac  10888200  Previous    Next  AGI:  At1g30690.1    Description:  SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein. Identical to Patellin-4 (PATL4) [Arabidopsis Thaliana] (GB:Q94C59;GB:Q9SA84); similar to SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein [Arabidopsis thaliana] (TAIR:AT4G09160.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42594.1); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251); contains InterPro domain Cellular retinaldehyde binding/alpha-tocopherol transport; (InterPro:IPR001071); contains InterPro domain emp24/gp25L/p24; (InterPro:IPR000348); contains I Range:  from: 10887687    to: 10890297    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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