Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    ---                                                                                                 <---                                                                                                 <---                                                                                                 <---                                                                                                 ----                                                                                                 <---                                                                                                 <---                                                                                                -----                                                                                                <----                                                                                               <-----                                                                                               ------                                                                                              <------                                                                                              <------                                                                                              -------                                                                                        ----------->HVH21                                                                                      <------ZmHOX2a(2)                                                                                     --------->ARR11(3)                                     ------>ZmHOX2a(1)                               <---------ARR11(3)                              ==============HOX2a_HOX2a                              <---------AGP1                              ------>ZmHOX2a(2)                                   --------->HSFB2a(2)                            <---------ARR11(3)                               <<<<<<<<<TBF1    -------                            <---------ARR14(2)                            <<<<<<<<<TBF1------>ZmHOX2a(2) ->ANAC46                   --------->ARR11(3)                         <<<<<<<<<TBF1<---------CCA1(2) ->ANAC58                 ----------->ARR10                         <<<<<<<<<TBF1 --------->HSFC1(1) ->ANAC58               --------->CCA1(2)                        <<<<<<<<<TBF1    <---------HSFB2a(2)   agtagaaatggtttctcaaattgaagagatgatctggtcctgccatggatgccattgtcttagcttcttcttcttcttcttcttctagatctcacagatc  10860200 ------>LBD16 ------ANAC58 ------ANAC46 ------ANAC58 ----->ANAC55(2) ------ANAC55(2) ------ANAC55(1)             --------->ALFIN1 ->ZmHOX2a(2)                ----------->GT1 ---TEIL  <---------------AGL15 -ZmHOX2a(2)               <---------TGA1a --->CCA1(2)             <---------ZAT14                               ------->TEIL ---GLK1(2)              --------->ZAT14   *TSS                        <-------TEIL                 < ---ARR14(2)   ---------->DOF2         --------->YAB1      ------>NtERF2    --------->DAG2         -- -->ARR14(2)   ======================bZIP_DOF    --------->AHL20(2)<---------------AtSPL8         <-- -->AGP1  --------------->AGL15     --------->YAB1     ----------->HVH21   ---------->DOF2 <---------YAB1   cgtgtctaactccaaaataaagaaaactgaagtgtgaataatcaaaaccaaaaaaatatgacgccttaagatgtacataaagccccatacattttgaatg  10860300                                                                                   --------->O2                                                                                   --------->ANAC58                                                                                   --------->ANAC55(2)                                                                                   --------->ANAC55(1)                                                                                   --------->ANAC46            <------------CBF                                                       <---------O2         --------->ANAC58                      --------->WRKY38(1)                 <---------TGA1a         --------->ANAC58               <---------DAG2                             --------->ANAC58       --------->ZAT6                   <----------DOF2                            --------->TGA1a  <  <------------CBF               --------------------->WRI1                  <----------DOF2       -- ---------YAB1                 ------------>CBF--------->WRKY12              ================bZIP_DOF ---------->CBF               >>>>>>>>>>>>>>>>>LFY <---------MYB59    <---------At4g35610 ------>ZmHOX2a(1) ---------GT1       <-----------------AGL2     ----------->HVH21<---------ALFIN1<---------REM1(2)  <-   ttacaattgacactcattgttatctattttaggcccaatgggcttttcgatgacccaattagttcgacactctgcttctctttacacgtctcctacatac  10860400                                                                              --------->AtMYB61                                                                             --------->MYB46(3)                                                                           --------->ANAC58                                                                           --------->ANAC58                                                                        <---------At4g35610                                                                        --------->At4g35610        --------->GLK1(2)                                            <---------MYB52(1)   ----------->HVH21                                                 --------->DOF5.7(2)  --------->At5g28300                             --------->LBD16  --------->bZIP60(1)           <--- ----------->GT1                     <-----------GT1  <-------GAMYB<---------bZIP60(1)          ----- ---------DEAR3(1)      --------->AHL20(2)      --------->LBD16   ----------->STF1              <---- ------->SPL7           ---------->DOF2         <---------LBD16   <---------TOE2(3)        --------->YAB1 --------ORA47(1)      <---------ATHB12       <---------LBD16   ----------->TGA1          <---------ATHB12   ggacggtgacaatcttgtcttaccaataaaacgcgtttttatccaattcgcgcgggagttgttctaatgacgttagcaaaccactccgttcaatcgtgct  10860500                                                 --------->At4g35610                                         <-----------HVH21                                       <-------MYC3                                       <-------MYC4                                       -------->ABF1         <----------ID1                ------->MYC4         --------->ETT(2)              ------->MYC3         <---------ETT(2)              <-------MYC2        --------->DDF1                 ------->MYC2            ----------->HVH21   <---------MYB52(1)                 <--------ABF1         --------->AHL20(2) --------->ANAC55(2)                  <---------TGA1a       <---------AHL20(2) --------->O2                         --------->ANAC55(2)  <---------ATHB12                  -------- <---------ANAC55(2)                  --------->TGA1a  --------->LBD16                       <------- --------->ANAC58                     <---------O2     ------------>CBF    ----------->GT1  <-------- --------->ANAC58                     <---------ANAC55(2)  --------->AHL20(2)   ---------->DOF2  <--- --------HVH21                        --------->O2<---------ANAC58   --------->LBD16        <-------- ---->bZIP60(1)                  ----------->HVH21<---------ANAC58 <---------LBD16          --------- -----bZIP60(1)               <-----------GT1    <---------At4g35610<---------LBD16         <--------   gtcacgttatgtcgacaaacaaatccaacaatttactgacacgtgtcatttagcttccccaataaatgacccgggaatagttaaaagccggtttaccagt  10860600            --------->MYB46(3)           --------->At4g35610          --------->ANAC46      <-----------GT1 ------->AGL15 --------AGL15          <---------ICU4         <---------ZAT14 ---------AGL2  --------->DEAR3(1)             <---------ARR14(2) ---------CBF--------->DEAR3(1)               --------->DOF5.7(2)<---------ARR14(2) ---------AGL1 <------NtERF2                <---------ANAC46     --------->ARR14(2)  --------->TOE2(3) -------->AGL2------>NtERF2          *TSS--------->ANAC46     --------->AHL20(2)    ----------->GT1 ---------AG<---------MYB55(2) --------->At5g28300    <----------DOF2  <----------DOF2   attggttttaatcagccaccgagtcatcgtgactgtaacttaaacggcgtttactgcttcaagataaaatacgctttgcccaaaaaacgttattagttcg  10860700                                      --------->AHL20(2)                                  <---------AHL20(2)                              --------->AHL20(2)                     ----------->RAV1(1)                           <----------DOF2                  <---------ANAC55(1)                          ------>ZmHOX2a(2)                 <---------ANAC46                         <------ZmHOX2a(2)   <---------ANAC46        --------->MYB52(1)                         <---------RVE1(1)   <---------------AGL15--------->ANAC58                        --------->ARR11(3)   <---------ANAC58     --------->ANAC58          ---------                 <----------DOF2  --------->AHL20(2)        <---------ANAC58   <---------ARR14(2)                <---------DAG2<---------AHL20(2)<----------DOF2   --------->ANAC46          ---------        <-----------GT1 <---------ARR11(3)   <---------ANAC58  --------->REM1(2)            <--------    <---------MYB52(1)  --------->AGP1<---------AHL20(2)    <---------ANAC58   --------->ARR14(2)   -   taatccgtttttgctctcccttttgagatcttttaattaaaaaaattccgttttaagtgaatgcgtgtaagcaacagttcgaattcgaagcgagagctaa  10860800                                                     --------->ANAC46     --------->RVE1(1)                              --------->HSFB2a(2)    --------->GLK1(2)                               <---------HSFB2a(2)    --------->ARR11(3)                             <---------ANAC46    <---------ARR11(3)                          ------>ZmHOX2a(1)          <------ZmHOX2a(2)   <---------GLK1(2)                            ==================================HOX2a_HOX2a >At4g35610                             <----------DOF2       ---------->ID1       <-----------GT1 -->GT1                       <---------REM1(1) <----------DOF2  --------->At4g35610        <-------- -At4g35610                  <---------TOE2(3)------>ZmHOX2a(2)  <---------At4g35610  <---------DAG2 -------->YAB1    ---------->ID1        --------------------->WRI1     --------->LBD16<----------DOF2   aatcaaaatctctctgatttgttgttttgttgatgtaagtttctttgatcctttcgcgaaatttgtcatcttccccgatcgagttttactttttctttgt  10860900                                                     --------->ARR14(2)                                                     --------->ARR11(3)                                                     <---------ARR11(1)                                                     --------->GLK1(2)                                                     <-----------ARR10                                                     <---------ARR14(2)                     ---------                  <-----------GT1                   <---------ARR14(1)                  --------->YAB1            ---------->ID1                          <---------CCA1(2)                  <---------YAB1         <---------DAG2                           <---------ANAC58                  <---------AHL20(2)      <-----------GT1 <<<<<<<<<TBF1  <---------AtLEC2------->TEIL            <-----------GT1--------- --DOF2  <----------DOF2 <<<<<<<<<TBF1            <---------ANAC58        ----------->GT1   ---------   gaatagtttgacttttcgtttttcttcttcttcaatctcgcatggtgtttgtgcgtatcttgtttggaattggagtttgtaactatttgattataagcaa  10861000                                                                                  <---------ANAC58                      --------->ANAC58                                            <---------ANAC46                      --------->ANAC58                                            <---------ANAC58                <---------ANAC46             ------->TEIL               --------->AHL20(2) <---------YAB1 <---------ANAC58   --------->AGP1                       <---------AHL20(2) >ANAC58        <---------ANAC58 --------->LBD16  <---------CCA1(2) --------->ATHB12 >ANAC46    <---------ANAC58    <---------HSFB2a(2)        <-----------HVH21     <-------TEIL >ANAC58    <---------ANAC58    --------->HSFB2a(2)------->TEIL     ----------->GT1 <---------ANAC46   gttttgattcgaatgcatgcgtgcaatccacaatccagaactagatgtatatgtatctctatgtcaagagtgattaaaatcgattcgtgtggaattaact  10861100  Previous    Next  AGI:  At1g30630.1    Description:  coatomer protein epsilon subunit family protein / COPE family protein. Identical to Coatomer subunit epsilon-1 [Arabidopsis Thaliana] (GB:Q9SA78;GB:Q8LB21); similar to coatomer protein epsilon subunit family protein / COPE family protein [Arabidopsis thaliana] (TAIR:AT2G34840.1); similar to epsilon1-COP [Glycine max] (GB:BAA94964.1); contains InterPro domain Coatomer, epsilon subunit; (InterPro:IPR006822); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) Range:  from: 10858280    to: 10860243    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g30640.1    Description:  protein kinase, putative. similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G14350.3); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G14350.2); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G14350.1); similar to protein kinase [Triticum aestivum] (GB:BAD19066.1); similar to protein kinase [Triticum aestivum] (GB:BAD19068.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42617.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Pro Range:  from: 10860637    to: 10864682    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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