Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                     --------->ANAC58                                                   --------->ANAC58                                                <---------MYB52(1)                                                <----------CDC5                                               --------->LBD16                 --------->HSFB2a(2)       <---------ARR14(2)                            --------->RVE1(1)                 ------>ZmHOX2a(1)         --------->ARR14(2)                           <---------ARR11(3)             <---------ARR14(2)           <---------GLK1(1)   <---------HSFB2a(2)       --------->ARR11(3)             --------->GLK1(2)      <---------At4g35610       --------->HSFB2a(2)       --------->GLK1(2)        ---------->DOF2       <---------TOE2(3)<---------At4g35610                     <---------GLK1(2)   --------->YAB1<---------HSFB2a(2)--------->At4g35610--------->MYB52(1)       --------->ARR11(3)  <---------ATHB12           ---------->DOF2   --------->At4g35610              <---------ARR11(3) <-   ctaaatcatcaaaagaatcctagaattctactaaagttatctgaaattccgctaagcaaacgttacagaagatgaattgaaacatctcaaaatctcttga  10859800                                                            --------->At4g35610                                                       <------ZmHOX2a(1)                    ---------                                                       =============================HOX2a_HOX2a                                                 --------->REM1(2)                        --------->ANAC58                                                 <---------ZAT14    <----------DOF2       --------->ANAC58                         <-------TEIL         <---------ANAC46 --------->At4g35610        --------->ANAC46             <------ZmHOX2a(1)            <---------At5g28300  <---------At4g35610 --------->YAB1 ----------GT1          --------->CCA1(2)<-----------GT1--------->ALFIN1     ------>ZmHOX2a(2)   attaccttgttttcaggactcgatagatacatagcaaggagtttcactgcctgtagaggagtagcagcggcttcatcgatctcactgatgacaagctacg  10859900                                                                              <---------ARR14(2)                                                                         --------->ANAC58                                                                     --------->ANAC58                --------->TOE2(3)                                    --------->ANAC58  --------->HSFC1(2)               ----------->GT1                                     --------->MYB52(1)  <---------HSFC1(2)               <---------ANAC55(2)                              --------->ANAC58     <--------P --------->ANAC58                             --------->GLK1(1) --------->ANAC46   ----------->GT1 --------->ANAC58            <---------ATHB12 <---------GLK1(1) --------->ANAC58 --------->TOE1(2) >TOE1(2)     <-----------------------TaNAC69(2)       ----------->GT1   --------->ANAC58    --------   aagacgaaatttgaaaaacgtaaatcagcaaatgatcaaaacaaattgaaatccaaatcgaaaaacacgagacggaagcaaaacctggtaacttccgaga  10860000                                                                             ------>ZmHOX2a(2)                                                                      <---------MYB46(3)                                                                    <-------GAMYB                                                                   <-----------RAV1(1)                                             ------>ZmHOX2a(1)------>ZmHOX2a(2)              --------                                             ========================HOX2a_HOX2a             --------                                             =======================HOX2a_HOX2a              --------                                            --------->TOE1(2)<------ZmHOX2a(2)           --------->ANAC58                                            --------->TOE2(2)<---------GLK1(1)           --------->ANAC58                                      --------->ARR11(3)     --------->GLK1(1)   --------->At4g35610                                      <---------ARR11(3)    --------->ARR14(2)   <---------ZAT2                                      --------->ARR14(2)    <---------ARR11(3)   --------->ZAT2                                     --------->GLK1(1)      <---------ARR14(2)   <---------At4g35610 ->LBD16--------->ZAT18              <---------GLK1(1)      --------->ARR11(3)  <---------TOE1(2)   gcgatgtaagcgcgatggacgagacagtctcgctcgacgatatcttcctgcgaaagattagggatctcgctgttgttgatcgcagcttgataagcaccca  10860100                                                                                                  ---                                                                                                 <---                                                                                                 <---                                                                                                 <---                                                                                                 ----                                                                                                 <---                                                                                                 <---                                                                                                -----                                                                                                <----                                                                                               ------                                                                                               <-----                                                                                              -------                                                                                              <------                                                                                              -------                                                                                        ----------->HVH21                                                                                      <------ZmHOX2a(2)                                                                                     --------->ARR11(3)                                     ------>ZmHOX2a(1)                               <---------ARR11(3)                              ------>ZmHOX2a(2)                                      <---------AGP1                              ==============HOX2a_HOX2a                           --------->HSFC1(1)                            --------->ARR11(3)                               <<<<<<<<<TBF1    <------                            <---------ARR14(2)                            <<<<<<<<<TBF1------>ZmHOX2a(2) ->ANAC46                   <---------ARR11(3)                         <<<<<<<<<TBF1<---------CCA1(2) ->ANAC58                 ----------->ARR10                         <<<<<<<<<TBF1 <---------HSFB2a(2) ->ANAC58               --------->CCA1(2)                        <<<<<<<<<TBF1    --------->HSFB2a(2)   agtagaaatggtttctcaaattgaagagatgatctggtcctgccatggatgccattgtcttagcttcttcttcttcttcttcttctagatctcacagatc  10860200 ------>LBD16 ------ANAC46 ------ANAC58 ------ANAC58 ----->ANAC55(2) ------ANAC55(1) ------ANAC55(2)             ----------->GT1 ->ZmHOX2a(2)                --------->ALFIN1 ---TEIL  <---------------AGL15 --->CCA1(2)               <---------TGA1a -ZmHOX2a(2)             <---------ZAT14                               ------->TEIL -->AGP1  --------------->AGL15        --------->YAB1                  <-------TEIL                 < ---ARR14(2)             --------->ZAT14   *TSS            ------>NtERF2    --------->DAG2         -- -->ARR14(2)   ======================bZIP_DOF    --------->AHL20(2)<---------------AtSPL8         <-- ---GLK1(2)    ---------->DOF2      --------->YAB1     ----------->HVH21   ---------->DOF2 <---------YAB1   cgtgtctaactccaaaataaagaaaactgaagtgtgaataatcaaaaccaaaaaaatatgacgccttaagatgtacataaagccccatacattttgaatg  10860300                                                                                   --------->ANAC46                                                                                   --------->ANAC58                                                                                   --------->TGA1a                                                                                   --------->ANAC55(2)                                                                                   --------->ANAC58            <------------CBF                                                       <---------TGA1a         --------->ANAC58                      --------->WRKY12                    --------->ANAC55(1)         --------->ANAC58               <----------DOF2                            --------->O2       --------->ZAT6                   <---------DAG2                             <---------O2     <  <------------CBF               --------------------->WRI1                  <----------DOF2       <- ---------YAB1                 ------------>CBF----------->HVH21<---------ALFIN1<---------REM1(2)  -- ---------->CBF               >>>>>>>>>>>>>>>>>LFY <---------MYB59           ================bZIP_DOF ---------GT1       <-----------------AGL2     --------->WRKY38(1)    <---------At4g35610 ------>ZmHOX2a(1)   ttacaattgacactcattgttatctattttaggcccaatgggcttttcgatgacccaattagttcgacactctgcttctctttacacgtctcctacatac  10860400                                                                              --------->AtMYB61                                                                             --------->MYB46(3)                                                                           --------->ANAC58                                                                           --------->ANAC58                                                                        <---------At4g35610                                                                        --------->At4g35610        --------->GLK1(2)                                            --------->DOF5.7(2)   ----------->HVH21                                                 <---------MYB52(1)  --------->At5g28300                             --------->LBD16  --------->bZIP60(1)           <--- ----------->GT1                     <-----------GT1  <-------GAMYB<---------bZIP60(1)          <---- ---------DEAR3(1)      --------->AHL20(2)      --------->LBD16   ----------->STF1              ----- --------ORA47(1)       ---------->DOF2         <---------LBD16   <---------TOE2(3)        --------->YAB1 ------->SPL7          <---------ATHB12       <---------LBD16   ----------->TGA1          <---------ATHB12   ggacggtgacaatcttgtcttaccaataaaacgcgtttttatccaattcgcgcgggagttgttctaatgacgttagcaaaccactccgttcaatcgtgct  10860500                                                 <---------At4g35610                                         <-----------HVH21                                       <-------MYC2                                       ------->MYC4                                       ------->MYC3         <----------ID1                <-------MYC4         --------->ETT(2)              ------->MYC2         <---------ETT(2)              <-------MYC3        --------->DDF1                 -------->ABF1           ----------->HVH21   <---------MYB52(1)                 <---------ANAC55(2)   --------->AHL20(2) --------->ANAC55(2)                  --------->O2          <---------AHL20(2) --------->ANAC58                     --------->TGA1a      --------->AHL20(2)                -------- <---------ANAC55(2)                  <--------ABF1    ------------>CBF                      <------- --------->ANAC58                     <---------TGA1a  --------->LBD16          ---------->DOF2  <--- --------->O2                         <---------O2<---------ANAC58   --------->LBD16        --------- --------HVH21                        --------->ANAC55(2)  <---------ATHB12----------->GT1  <-------- -----bZIP60(1)                  ----------->HVH21<---------ANAC58 <---------LBD16          <-------- ---->bZIP60(1)               <-----------GT1    --------->At4g35610<---------LBD16         <--------   gtcacgttatgtcgacaaacaaatccaacaatttactgacacgtgtcatttagcttccccaataaatgacccgggaatagttaaaagccggtttaccagt  10860600            <---------MYB55(2)           --------->At4g35610          --------->ANAC46      <-----------GT1 ------->AGL15 --------AGL15          <---------ICU4         <---------ARR14(2) ---------CBF--------->DEAR3(1)                <---------ZAT14 -------->AGL2  --------->DEAR3(1)            --------->DOF5.7(2)--------->ARR14(2) ---------AGL1 <------NtERF2                <---------ANAC46     <---------ARR14(2)  --------->TOE2(3) ---------AG--------->MYB46(3)       *TSS--------->ANAC46     --------->AHL20(2)    ----------->GT1 ---------AGL2------>NtERF2    --------->At5g28300    <----------DOF2  <----------DOF2   attggttttaatcagccaccgagtcatcgtgactgtaacttaaacggcgtttactgcttcaagataaaatacgctttgcccaaaaaacgttattagttcg  10860700  Previous    Next  AGI:  At1g30630.1    Description:  coatomer protein epsilon subunit family protein / COPE family protein. Identical to Coatomer subunit epsilon-1 [Arabidopsis Thaliana] (GB:Q9SA78;GB:Q8LB21); similar to coatomer protein epsilon subunit family protein / COPE family protein [Arabidopsis thaliana] (TAIR:AT2G34840.1); similar to epsilon1-COP [Glycine max] (GB:BAA94964.1); contains InterPro domain Coatomer, epsilon subunit; (InterPro:IPR006822); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) Range:  from: 10858280    to: 10860243    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g30640.1    Description:  protein kinase, putative. similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G14350.3); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G14350.2); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G14350.1); similar to protein kinase [Triticum aestivum] (GB:BAD19066.1); similar to protein kinase [Triticum aestivum] (GB:BAD19068.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42617.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Pro Range:  from: 10860637    to: 10864682    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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