Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                          --------->TOE1(2)                                                                        --------->TOE2(2)                                                                     <-----------GT1                                                                    <-----------GT1                              <---------At4g35610             ------>ZmHOX2a(1)                              --------->At4g35610       --------->ARR14(2)   ---------->DOF2                             <-----------RAV1(1)        --------->GLK1(2) ------>MYB46(1) ----At4g35610          <---------ZAT2                  <-----------ARR10 ------>MYB83      --------- --->At4g35610          <---------At4g35610<---------GLK1(2) --------->TOE2(3)  <----------ID1  ----- -At4g35610    --------->ANAC46  <---------At4g35610   <---------GLK1(2)<---------MYB59    >>>>>>>>>>MYB80   tcccattctctatgaacacaaaacacagctactgctgctacttcagaattttgccaagaatctccttaatttaacctactaaagaacaaaacaaaccatc  10839600                                                                                     --------->MYB52(1)                                                                                     <-----------GT1                                                          ------>MYB46(1)          <---------MYB52(2)                                                          ------>MYB83            --------->ANAC58                                                        --------->AtMYB61         --------->ANAC58              ---------->DOF2        ---------->DOF2    <---------ALFIN1          --------->ANAC46            --------->ANAC58    <---------ANAC55(2)    --------->MYB46(3)  <---------------AGL15<---- >MYB46(3)  --------->ANAC46    <---------YAB1<----------DOF2          <---------ANAC58    ------>NtERF2 ---->YAB1  --------->ANAC58    <---------ANAC46     <-----------GT1   <---------ANAC58    <---------ATERF1(1)   aaaatgcaaggagcacgaaagtaaacagtagattatgtataaagccccctttaagaaaccaccctaacaatttgcttctaaaccaagtaacgacgcctac  10839700                                                                                                   --                                                                                                 ----                                                                                                -----                                                                                           --------->At4g35610                                 ----------->GT1                                           <---------At4g35610                                ----------->GT1                                         <---------At4g35610                               <---------TOE2(3)                                   --------->At4g35610                      --------->YAB1                         --------->YAB1<----------DOF2 --------->ZAT2      --------->YAB1 <---------YAB1                  --------->CCA1(2)   --------->At4g35610    ----- -----YAB1        --------->MYB46(3)            ---------->DOF2<-----------GT1     <---------At4g35610   tattgaaatcaaaaccagaaaccatcataaacaaaggttaaataactcacaaaagataaacaattgtactctctctgcttcacttagctaagcagctcaa  10839800                                                 --------->LBD16                                                --------->LBD16                                               --------->LBD16                                               <---------LBD16                  <---------TOE1(3)                                              --------->TOE1(2)          --------->DAG2      XXXXXXXXXXXXXXXXXXXX>MIR417             <---------LBD16        <---------ANAC55(2) <-----------RAV1(2)                        --------->ARR14(2)       --------->ANAC58 --------->RAV1(1)                          ------->TEIL----------->GT1---------->DOF2 ----->MYB46(3)   <---------ANAC58          <---------ARR14(2) <---------AHL20(2)  <----------DOF2 ---->ANAC58      <---------ANAC58  <---------AHL20(2)--------->DAG2 --------->ANAC58 ---->ANAC58  <---------ARR14(2)   --------->AHL20(2)---------->DOF2 --------->ANAC46     -----------   gcaccagaagatagcgaatttcgtcggaatttgaaaaattaatccgaacccgggaaaaaggagaataaatcacgaaaggtttaagctttgatgtgactct  10839900                                      <------ZmHOX2a(1)                                --------->At4g35610                                <---------At4g35610                                <------NtERF2                               ------>NtERF2                               <---------DEAR3(2)                              <---------DEAR3(1)                             <------NtERF2                           --------->bZIP60(1)                           <---------O2                                         <-----------ARR10                           <---------bZIP60(1)                               --------->ANAC46                           <---------ANAC58                                 --------->LBD16                           <---------ANAC58                               ------>ZmHOX2a(2)                           <---------ANAC46 --------->At4g35610           <---------LBD16                         <-----------HVH21<-----------RAV1(2)            <------ZmHOX2a(2)                        ==============================RAV               --------->ARR14(2)      <----               <<<<<<<<<TBF1 --------->ATERF1(1)>>>>>>>>>TBF1           <---------ARR14(2)    <------ >HVH21  ---------->ID1 <-----------RAV1(1) <---------At4g35610         ------->TEIL   *TSS   -------   ccaacgtcttcgtcttcttcttctctgtgtcgtcggctaaggagtcagaagaagaagagagaagaagttcgatggatccgcgaaactaggcctgggattt  10840000                                                                                           --------->ATHB12                                                                                           --------->ATHB51                           --------->MYB52(1)                                             <---------YAB1                       ------>MYB46(1)                                                   <---------AHL20(2)                       ------>MYB83                                                      --------->AHL20(2)                  ------>MYB83                                                           <---------AHL20(1)                  --------->MYB52(1)                                                     --------->AHL20(1)                  ------>MYB46(1)                                               ----------->GT1         ------>MYB83<---------MYB59                                           ------>ZmHOX2a(2)         ------>MYB46(1) --------->MYB46(3)  <---------YAB1                   <------ZmHOX2a(2)    <-----------GT1 --------->DEAR3(2)    <---------ARR14(2)                  --------->SPL7 -----LBD16     <---------MYB59           --------->ARR14(2)                 <---------ARR14(2) ---GLK1(1)  --------->MYB52(1)      <-----------GT1  ------>MYB83 ----------->GT1      --------->YAB1 -->GLK1(1)--------->MYB46(3)   <---------GLK1(2)     ------>MYB46(1)        --------->ARR14(2)   <--   cggattaaaccgaacaaaccgaaccgaacaaaccgattttttcggttccgattaccgactatgaagagaaggctaaaccgatcggcaaaattataattgg  10840100                         <---------At4g35610                         --------->At4g35610                      --------->SPL7                     <---------MYB52(1)                     <---------ARR14(2)                     --------->ARR14(2)                   <---------DEAR3(2)                   <------MYB46(1)                                                                  <              <---------DEAR3(2)                                                                  ---              <------MYB46(1)                       <---------MYB52(1)     ----------->GT1   ------>ZmHOX2a(2)             --------->MYB59                       <-------GAMYB          ----------->GT1   <------ZmHOX2a(2)           <---------MYB52(1)           ------>ZmHOX2a(2)               ---------->DOF2    --------->AGP1  <------MYB46(1)  <------MYB83        <------ZmHOX2a(2)           --------------->AGL15   <---------AGP1  <------MYB83<------MYB83            <---------ARR14(2)           <---------------AGL15   <---------ARR11(3) --------->MYB59  --------->MYB59--------->MYB52(1)--------->At5g28300--------->YAB1       --------->ARR11(3) -------GLK1(1) <---------MYB52(1)    --------->ARR14(2)          ----------------->AGL3  <---------CCA1(2)   agttcggttctcggttcggttcggttcggcagacataaccgatcggttttctcggttaatagatactacctataaaaagataaaaaaaacctagatctaa  10840200                                                                                                   <-                                        ------>ZmHOX2a(1)              --------->YAB1            <--- ---------YAB1                  <----------DOF2                 <---------MYB52(1)            <------ ------>YAB1             <---------CCA1(2)               ------->TEIL <---------YAB1          <------   tcttcatagcttcttgttctctatctcgtttcttcttttctccttcaaccttcttcttgcaccttcgttattttcataactcttccttctccatcccttt  10840300                                                     <---------HSFB2a(2)                          ----------->HVH21       <---------YAB1                      ------>NtERF2    --------->ANAC58                                ------>ZmHOX2a(1)    ---------->ID1   --------->ANAC46  --------->AtLEC2                               --------->TOE2(3) ---------DOF2       --------->DEAR3(1)--------->ANAC58                           <---------ICU4 ---------------------ANAC81           --------->ANAC46         <---------AHL20(2)--------->YAB1 ---DAG2            <---------LBD16<------ZmHOX2a(2) --------->HSFB2a(2) <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ----DOF2      --------------------->WRI1    <---------ZAT6    --------->AHL20(2)<---------ATHB12 <--   tcttttgttctcttcttcttactccgcctcgacatcgatccatgccagtgttattctagagagaattaaaacgtagtagcctaatcatcctcatccatgg  10840400                                                                         --------->ARR11(3)                                                                         <---------ARR14(2)                                                                         <---------ARR11(3)                                                                         --------->ARR14(2)                                   >>>>>>>>>WRKY6          <---------ARR14(2)                                 --------->WRKY45          <---------GLK1(2)                                 --------->WRKY38(1)       --------->ARR11(3)                              <---------ANAC46             <---------ARR11(3)                            <---------ANAC46               --------->ARR14(2)                           --------->ALFIN1        --------->MYB52(2)  ----------->ARR10            x                          <-------MYC2           <---------MYB52(1)  --------->LBD16             <---                          ------->MYC2          <-----------HVH21   <---------ANAC55(2)          <---                          ------->MYC3         --------->ANAC58     <---------ANAC46   --------->ANAC46                          <-------MYC3         --------->ANAC58    <---------LBD16     --------->ANAC58                       <---------ANAC58  xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)            --------->ANAC58  <---------AHL20(2)   <---------ANAC58<---------YAB1    ----------->ARR10<---------RVE1(1)     <---- -------------AGL15    <---------ANAC46<---------TOE2(3)xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      -----   ctattttaagtcaattctctccattgcatgtggtgttgactatggtagcacgttaggggcagattttgttacggagatattctcatccctcgccattgtc  10840500  Previous    Next  AGI:  At1g30590.1    Description:  RNA polymerase I specific transcription initiation factor RRN3 family protein. similar to RNA polymerase I specific transcription initiation factor RRN3 family protein [Arabidopsis thaliana] (TAIR:AT2G34750.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68517.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024); contains InterPro domain RNA polymerase I specific transcription initiation factor RRN3 (InterPro:IPR007991) Range:  from: 10835776    to: 10839987    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version