Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                      --------->MYB52(1) -->DOF2--------->ZAT6                                                             ---------->ID1 -AHL20(2)       --------->At4g35610                                            ------>ZmHOX2a(1) ---   actcaaggtatcactaatcggctaccgatacaacgacttgttgttcgaataaacttcgactcatttgaatattagtcatgtccttgttgtcttcaacatg  10696600             --------->ARR11(3)        <---------AHL20(2)        --------->AHL20(2)        --------->AHL20(1)                          <-----------GT1                     <---------ANAC58        <---------AHL20(1)                      <---------AHL20(2)                      <---------ANAC58     --------->ATHB51                        <----------DOF2                 <------ZmHOX2a(1)      x     --------->AHL20(2)                <---------GLK1(2)               <---------YAB1   --------->ANAC55(2) -------->GT1<---------ARR11(3)  <---------YAB1 --------->AHL20(2)--------->YAB1      <-----------GT1   aagtgaataatttattatcttggtgataatatgggatgatagaatttcttttaatttctattttacaaggattatgttaggatgttttttacttgatatt  10696700                                                                      <---------ANAC46                                                                      <---------ANAC58                                                                      <---------ANAC58                                                                   <---------ZAT14                                                                  xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                <---------ZAT6                           <---------At4g35610                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                           --------->At4g35610             <------MYB83                           <---------ZAT2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                          --------->MYB52(2)       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                     --------->ICU4     <------MYB83       <------MYB46(1)                          <            --------->ARR11(3)----------->GT1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)              <---          <---------YAB1<---------MYB52(1)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                <----  <------NtERF2   <---------YAB1        <------MYB46(1)   --------->MYB111(1)   <xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------->MYB59 --------->MYB52(2)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   gggaggcattgtatgattttgtaattgttagctggttaagttcggtttagtcaggtttagttggtagagtttacttgtatatatactcacaatgtacagg  10696800                                                                             <---------YAB1<xxxxxxxxx                                                                             <---------TOE2(3)                                                                           --------->YAB1  <---------ATHB12                                                                          <---------YAB1 --------->WOX13(1)                                 <-----------GT1                       <---------YAB1  ------------>CBF   <---------YAB1             <----------DOF2                          <---------------AGL15 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                 <-----------------AGL1--------- ---------AHL20(2)    --------->HSFC1(2)                              <-----------------AG <xxxxxxxxx ------ARR11(3)       <---------HSFB2a(1)                          <----------DOF2    <xxxxxxxxxxxxxx --ZmHOX2a(1)         --------->HSFB2a(1)                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xsmallRNA(fl3)       <---------HSFC1(2)                 <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   attttatcaataagagaaaatagaaacttcttcttttacaatctttctctctaaaaccctcttcttcgtctttactattatggtatcagagcaatcacgg  10696900                     <------------------------ANAC81                   ====================================HOX2a_HOX2a                   ------>ZmHOX2a(2)                  <----------DOF2                       <xxxxxxxx                  <------ZmHOX2a(2)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           --------->ZAT2                  =====================================HOX2a_HOX2a                       <------NtERF2                 --------->ARR14(2)    <---------ANAC58                             <xxxxxxxxxxxxxxxx xxxxxxxxxxxxxxsmallRNA(si3)           <---------ANAC58              <---------ANAC58    <---------At4g35610 >YAB1           <---------ARR14(2)    <---------ANAC46         <----------DOF2  <---------REM1(1) xxxxxxxxxxxxxxsmallRNA(se3)---------->ID1      ------>ZmHOX2a(1)    <---------ANAC58    <---------ZAT2 xxxxxxxxxsmallRNA(si3)    <------------------------ANAC81  <---------At4g35610  *TSS    --------->At4g35610   ttctaatcttcttctctccgatctgattttgttcttctcttgctggtttcctccatcttttgagctctttttcgttcaaaatggtgaaggcagctcgagt  10697000                                            --------->ZAT2                                            <---------At4g35610                                            --------->At4g35610                                          <---------ZAT18                                         <---------ANAC58                                         <---------ANAC46                                         <---------ANAC58                                --------->ZAT2                                <---------At4g35610                                <---------ZAT2                             --------->TOE2(2)                                --------->At4g35610                      ------->TEIL                              <---------ZAT18                            -------->P                             <---------ANAC58                        --------->ARR14(2)                             <---------ANAC58                <------ZmHOX2a(2)                <------ZmHOX2a(2)    <-------GAMYB          <---------ARR14(2)       <---------ATHB12   <---------MYB52(1)<---------ZAT2  --------->ARR14(2)                  ===== xxxxxxxxxxxxxxxsmallRNA(le3)<---------ANAC46               <-----------ARR10        <---------DOF5.7(2) xxxxxxxsmallRNA(le3)    <-------GAMYB<---------MYB52(1)  --------->DEAR3(1)      --------->YAB1-----   cactctcaaatcaactcgatccaagtccgttgcgagctccgttgcgagctccattgttcgccgatctactcgatctacctccgatggtaacgtttctcct  10697100                                                                         <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                        ------>ZmHOX2a(2)                                                              --------->GLK1(1)                                                              <------ZmHOX2a(2)                                                              <---------GLK1(1)                                                             <---------AGP1                                 --------->LBD16             --------->ARR11(3)                    <---------ARR11(3)                       <---------ARR11(3)                    --------->ARR11(3)                       <---------ARR14(2)                   <---------CCA1(2)                         <-----------ARR10            <---------At4g35610 --------->HSFB2a(2)          --------->AGP1            <---------ZAT2      <---------HSFB2a(2)          --------->ARR14(2)     <------ZmHOX2a(2)         <---------LBD16  xxxxxxxxxxxxxxxx>smallRNA(s) ===========HOX2a_HOX2a      <---------ARR14(2)--------->ALFIN1------>ZmHOX2a(2) ->ZmHOX2a(1)  --------->At4g35610  --------->GLK1(1)       <---------CCA1(2)   <-----------HVH21   ctaatcgatcatccagcagctatatctcaagtttccggacttccaagaggtgttccatcgccagatctctctgatccaactcagtcacctctgtttatgc  10697200                                                             <---------WOX13(1)                                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                           --------->ATHB12                                                          --------->ICU4                                                          <---------YAB1     <---------ANAC46                                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             --------->LBD16                            --------->YAB1       <---------ANAC58          ------>MYB46(1)                              --------->ICU4        <---------ANAC55(2)          ------>MYB83                                 <---------YAB1        --------->ANAC55(2)        --------->AtMYB61                            <---------ICU4          <---------ANAC58  --------->ZAT14          --------->At4g35610       --------->YAB1          <---------ANAC55(1)  <---------ZAT18     --------->YAB1                --------->ICU4          <-------TEIL  <---------ZAT14   <-----------GT1           --------->MYB52(1)    --------->CCA1(2)   acagtgcagaccatccaggtttaaacatcatctctcttcgtcttgaagaaacgaattatgatgattggagctatgcgatgcgtatttctcttgatgctaa  10697300                            <---------ANAC46                        <---------ANAC58                                                          <--                        <---------ANAC58                                                          ---                       ------>ZmHOX2a(2)                                                         <---                      <------ZmHOX2a(2)                                                       <------                     --------->ARR14(2)                                                     ---------                     <---------ARR14(2)                                                     <--------                     ------->TEIL                                                          --------->ICU4                  <---------WOX13(1)                                                ----------->GT1<-          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                           <-------TEIL     <---------ATHB12   gaacaaaataggttttgttgatggatccttgcctagaccattgtctatagacccgatgtttagagcatggtcgagatgcaactctatggtgaaatcatgg  10697400                       ------>ZmHOX2a(2)                                    <---------At4g35610                      <------ZmHOX2a(2)                                 ------>ZmHOX2a(2)                     --------->AGP1                                    <---------GLK1(1)                     --------->ARR14(2)                           <---------ANAC46                     <---------AGP1                             <---------ANAC58 -------MYB46(3)     <---------ARR11(3)                         <------MYB83--------->At4g35610 -------->GT1        --------->ARR11(3)                         <---------ANAC46 -----P              <---------ARR14(2)             <---------ANAC58  <---------ARR11(3) ---YAB1  --------->ARR14(2)     --------->ARR11(3) <---------ANAC58  --------->ARR11(3) >YAB1    <---------GLK1(2)--------->YAB1<---------AtLEC2       <------MYB46(1)          --------->At4g35610 -ICU4    <---------ARR14(2)  <---------TOE1(2)   <---------YAB1<---------ANAC58         <---------At4g35610 ------GAMYB        <---------CCA1(2)  <---------YAB1 <---------At4g35610   --------->ZAT14   ttgttaaatgcagtttctccacagatctatcgtagcatcttgtgaatggatgatgcttctgatatttggtgtgatctctgcggtcgatttcatcttacta  10697500  Previous    Next  AGI:  At1g30340.1    Description:  transposable element gene. copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea) Range:  from: 10696981    to: 10701375    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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