Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                --------->ANAC58                                                     <---------ANAC58      ------->TEIL                                   <---------ANAC46                           <----  <---------TOE2(3)                                  <---------ANAC58                         ------- ---------AHL20(2)                                <--------P  <---------TOE2(3)               <------ ------->AHL20(2)                                <---------ANAC58                         --------->AHL20(2) ----ARR11(3)                                    <---------ANAC58                         <---------AHL20(2) --->ARR11(3)                                   <---------MYB46(3)     ----------->GT1 <----------DOF2 -->YAB1                                    --------->ATHB12  --------->ANAC58    <----------DOF2 --YAB1              <---------ANAC46     <----------DOF2--------->REM1(1)      ------>ZmHOX2a(1)   -   atttaatgaaactatctcttattgagtatgaaacaacttctgttctttattggttgcttacatcaaggaagtctggttactcctcttttcttttaattta  10515900                                                                              <----------DOF2                                                                             ========================                                                                             ------>ZmHOX2a(2)                                                                            =========================                                                                            <------ZmHOX2a(2)                                                                           --------->GLK1(2)                                                                           --------->ARR14(3)                                                                           <-----------ARR10                                                                           <---------ARR14(3)                                                                           --------->ARR14(2)                                               <---------AtMYB61           --------->ARR11(3)                                    ----------->HVH21                      <---------ARR14(2)                                  <---------ANAC58                     <---------LBD16                                  --------->MYB52(2)       --------->DAG2  <---------ARR11(3)     ---     <---------ALFIN1             <---------ANAC58       ---------->DOF2  <------ZmHOX2a(1)     <----  ------->GAMYB                  <-------TEIL <---------MYB52(1)  ------>ZmHOX2a(2)           ------- -------GT1               --------->AHL20(2)  <---------------------WRI1<---------TOE1(2)     <------ -->AHL20(2)            <----------DOF2     <---------DEAR3(1)    ===============HOX2a_HOX2a -------- ---AHL20(2)            --------->TOE2(3)   <---------DREB2C(2) --------->ARR11(3)           <------- ------->P              --------->TOE1(3)   <---------MYB46(3)  <---------ARR11(3)  <----------DOF2   tcaaccctcacattgaaatgctgaaactttaaatgttcgtgacaggccggtggtattagcaaaggtgatcttctcaggatctttctctttatgaagatat  10516000                                                                         --------->ANAC58                                                                         --------->ANAC46      <------ZmHOX2a(1)                                                --------->MYB52(1)      ================HOX2a_HOX2a                                     ------->GAMYB ============HOX2a_HOX2a      <----------DOF2                        --------->MYB46(3) ============HOX2a_HOX2a     <---------ANAC58                    ------>ZmHOX2a(1)    --------->LBD16 ------>WOX13(1)             <---------ANAC58               <---------MYB46(3)       <---------ANAC58 -----YAB1               <----------DOF2           ------>ZmHOX2a(1) <---------MYB52(2) -->GLK1(1)    <------ZmHOX2a(2)          <--------P        <---------DEAR3(2)       <---------ANAC58 ---GLK1(1)   --------->ARR11(3)         <---------MYB52(1)<---------DEAR3(1) <---------MYB52(1) ->ARR11(3)   <---------ARR11(3)      <---------LBD16   --------->ANAC46 --------->ANAC58 --ARR11(3)<xxxxxxxxxxxxxxxxsmallRNA(s) --------->LBD16--------->SPL7<---------MYB55(2) <-----------HVH21   cattcacaggaacccagatcatgagctctttgcttttgactccggtaagtctcctcatacggcggtcctcaacaaacgcagttatctccgtgtcatataa  10516100                                                                                        <-----------HVH21                                                                                        --------->LBD16                                                                                       --------->ANAC55(2)                                                                                 ------>MYB83                --------->ANAC58                                                 ------>MYB46(1)                --------->ANAC46                                               <---------MYB59                --------->ANAC58                                               --------->MYB46(3)                --------->ANAC55(2)                                           --------->ANAC58                <---------ANAC55(2)                                           --------->ANAC58   ----                --------->ANAC55(1)                                          ------->TEIL    <-------               <---------LBD16                                             <---------SPL7<---------MYB52(1)              --------->MYB52(1)               ------>ZmHOX2a(1)          <---------REM1(1)  --------          ------>MYB83                        --------->TOE2(3)<----------DOF2--------->ANAC46  -----          ------>MYB46(1)            <---------ANAC58 --------->ANAC58   --------------->AtSPL8 -----        <---------MYB59         <---------ATHB12      --------->ANAC58   <---------------AtSPL8 -----    ----------->HVH21   ------->TEIL <---------ANAC58 --------->ANAC46 <-----------RAV1(1)  <--------   aactctgcgacctatctcacggaatgtatgctcaatcttgcttctcatcctcatccacacaaacccttttgttttgttgtacccaacttccgtcatatcc  10516200                     --------->MYB111(1)                    <--------P                --------->ALFIN1        --------->MYB46(3) -->ZmHOX2a(1) --------->LBD16                    <---------DAG2 --ARR14(2)    <---------MYB52(1)                 <----------DOF2 ->ARR14(2)   <---------ANAC58                  ---------->ID1                             <---------bZIP60(1) ---->TOE1(3) <---------ANAC58          --------->HSFC1(2)                      <---------At4g35610 ---->TOE2(3) <---------O2              --------->HSFB2a(1)                     --------->At4g35610 ---------->AGL15<---------MYB46(3)     <---------HSFB2a(1)         <---------WOX13(1)     --------->bZIP60(1) -CCA1(2)     <---------ANAC46          <---------HSFC1(2)   ---------->DOF2 --------->ZAT14   ttcaatggcaacaatcccgtgggtagtttgatgagagcaagaagctccttggctttatcaagacaaagagattgatcactgtagctctctatgtcatcac  10516300                      --------->ANAC58                      --------->ANAC58            --------->At4g35610--------->AHL20(2)          --------->YAB1       <---------AHL20(2)         <---------YAB1     --------->YAB1    <------------CBF         <----------DOF2        <-----------GT1    --------->ICU4   <---------AHL20(2)   <---------MYB46(3) ---------->DOF2       --------->YAB1 --------->ANAC46<----------DOF2        <----------DOF2     ----------->GT1   tctcatctattatcatctctcttaacgccataataaatcactttgttttattgtcgaatgcgacttttggttactttgctatatagtaaagtttctatgg  10516400                  ----------->GT1                  --------->ANAC58                  <---------ANAC46       <---------ANAC58                  --------->ANAC55(2)    <---------ANAC58                 --------->SPL7          <---------ANAC46                 <-------TEIL            --------->ALFIN1              <---------ANAC58  --------->ANAC58              <---------ANAC58  --------->ANAC46             <---------------AtSPL8    --------->ALFIN1             <---------------AtSPL3 --------->DAG2    --------->YAB1<---------ANAC55(2)  <---------ANAC46    <---------ICU4--------->ANAC58---------->DOF2                        <------NtERF2   <---------ATHB12             --------->ANAC58             <------NtERF2   --------->YAB1   gtctaatcatgtgtttgggtacgtaaaatggaacacgaaaggtgtgtgtgagcattttcaggcctcatatttggctgcatcataactctgtgactaattt  10516500                                                                                   --------->AHL20(2)                                                                                  <---------------AGL15                                                                                  --------------->AGL15                                                                                 <---------------AGL15                                                                              <-------TEIL                                                                            <---------GLK1(2)     ---                                                                            <---------ARR14(2)    <--                          <---------AHL20(2)                           <-----------HVH21        -----                    <---------ANAC55(2)        --------->ATHB12     <---------ANAC58           ------                    --------->ANAC55(2)        -------->HAHB4       <---------ANAC46     ----------->GT1            --------->ANAC58           ----------->GT1 --------->ARR11(3)   --------->ARR14(2) <-----            --------->ANAC58        ------->TEIL       <---------ARR11(3)  --------->At4g35610-------        --------->GLK1(2) --------->AHL20(2)  <---------ATHB12      <---------ANAC58    ----------->GT1   actgaggcagaatcaagctattacataatttaagaacgaacttgttaaatgattcgaggtcttgactcttgcttgtcagattcacttaaatgggaaataa  10516600        <------------CBF   --------->YAB1   <---------ICU4   <--------ATHB1  --------->ICU4  <---------ATHB12  <---------ATHB51                                             <------ZmHOX2a(2) --------->CBF                                                <---------ARR11(3)        <---------ICU4 -------ATHB12                                                --------->ARR11(3)        --------->YAB1 ---->WOX13(1)                <---------CCA1(2)              --------->YAB1            <---------ATHB12 --->AHL20(2)           <-----------ARR10                   --------->ICU4           --------->WOX13(1) ----AHL20(2)           --------->GLK1(2)                 ---------->DOF2     --------->At4g35610 -->AHL20(2)           <---------GLK1(2)       <-----------------AGL1         <---------At4g35610   atcaataatggattgcagtttcagagaatctcatttcttctaagcacttgtacattttggcaaagatcatatagtccatgagctcatccatcatggccca  10516700                                                                   ----------------------->TaNAC69(2)                                                       --------->AHL20(1)                                                       --------->AHL20(2)                                       <---------TOE1(3)      <---------YAB1          --------->KAN4(1)            <---------TOE2(3)<---------AHL20(2)        <---------GLK1(2)       <---------AHL20(2)     <---------AHL20(1)             <----------DOF2 <-----------GT1          <----------DOF2              <---------AHL20(2)<---------YAB1   atttaacccagattattcagttaatgggctttattttttttaaggttttggagtcaatttatttctgatgggtttatcaataacgtctcttttttttttg  10516800  Previous    Next  AGI:  At1g30010.1    Description:  intron maturase, type II family protein. similar to intron maturase, type II family protein [Arabidopsis thaliana] (TAIR:AT5G46920.1); similar to intron maturase, type II family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA97559.1); similar to hypothetical protein OsJ_034449 [Oryza sativa (japonica cultivar-group)] (GB:EAZ20240.1); similar to hypothetical protein OsI_036808 [Oryza sativa (indica cultivar-group)] (GB:EAY82849.1); contains InterPro domain RNA-directed DNA polymerase (reverse transcriptase); (InterPro:IPR000477); contains InterPro domain Intron maturase, type II; (InterPro:IPR000442) Range:  from: 10513178    to: 10516369    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g30020.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G46230.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14438.1); contains InterPro domain Protein of unknown function DUF538 (InterPro:IPR007493) Range:  from: 10515858    to: 10516331    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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