Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                 xxxxxxxxxxxxxxxxxxxxxx                                                                            <---------ZAT14                                                                            --------->ZAT14                                                                          --------->ANAC46                                                                       --------->ZAT18                                                                       <---------ZAT14                                                                       --------->ZAT14         xxxxxx                                                                    ------>MYB83<---------------AGL15                                       <---------ANAC46             ------>MYB46(1)         ---------                                     <---------ZAT14              ------->GAMYB<-----------------AGL2                                   ------->TEIL                  --------->DEAR3(2)        <---------ANAC46                              <---------AtLEC2--------->DAG2     --------->MYB46(3)       <---------At4g35610 ->DAG2                     <---------YAB1   ---------->DOF2   --------->MYB52(1) <---------YAB1----- ->DOF2                 --------->GLK1(2)<---------ZAT6     --------->At4g35610<-----------------AGL3   aatgacatttcaataaacaaatagagaattttgaatgaatgtagtggaaaagtggattaaactgctaaccgactacactaaactatttttggagcggata  10512800                   --------->AHL20(2)                  <---------AHL20(2)               ------>MYB83               ------>MYB46(1)             <---------MYB59        --------->ANAC58        <---------TGA1a        --------->ANAC58                                --------->ARR14(2)        <---------ANAC55(2)                             <---------ARR14(2)        --------->ANAC55(2)                         <---------LBD16       --------------->AtSPL8                       --------->LBD16                          xxxxxxxx     <---------MYB52(1)   --------->TOE1(3)        --------->DEAR3(1)                        --------    <-----------TGA1      --------->TOE2(3)    --------->MYB46(3)                           <--------    <-----------HVH21   <---------TOE2(3)  <---------AHL20(2)                       --------->SPL7   --------->ANAC46<---------AHL20(2)      --------->AHL20(2)                     <---------SPL7 x>smallRNA(le3)  --------->AHL20(2)    --------->YAB1--------->LBD16            <---------ANAC58 xxxxxxxxxxxxxxxx>smallRNA(se3)        <---------AHL20(2)                        <---------ANAC58 -->GT1--------------->AtSPL3    ----------->GT1 <---------At5g28300<---------AHL20(2)   ------------ ---->YAB1 ------->TEIL<-----------GT1 <---------YAB1--------->ANAC46     <-----------GT1--------->ICU4   ataaaccgtcacgtaccaaatttttttacgttaaaaagtttataattaatccaccgcggaattgttctattttttttttcagtccgtactactgattata  10512900                                          xxxxxxxxxxxxxxxx>smallRNA(i)                                      --------->LBD16                                      <------NtERF2                                     --------->RAP2.3(2)                        --------->SPL7------>NtERF2                       --------->PCF5--------->DEAR3(1)                      <-----------HVH21   --------->MYB46(3)                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                 --------->DAG2      --------->ANAC46            <---------TOE2(3)        --------->RAP2.6(2)            <---------TOE1(3)        --------->RRTF1(2)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) <---------ATHB12                       <---------YAB1  <---------YAB1---------->DOF2     <---------LBD16   <----------DOF2          <---------ICU4 xxxxxxxxxxxxxx>smallRNA(se3)       --------->RAP2.3(1)                       <---------YAB1 ->YAB1    <---------DOF5.7(2)   --------->MYB46(3)   ------>ZmHOX2a(1)       --------->ICU4 -YAB1   --------->DOF5.7(2)  ------>ZmHOX2a(1)      --------->TOE2(3)     <---------YAB1     ------- --->AGL15 --------->MYB52(1) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)---------->DOF2        ---------->DOF2   gtttatgaatggttaacgaaaagcggtccgtcctaatcgccgcaaccatttgaatcctttgttagtactaaaagtttgtgattatgactaaaaaaaggtc  10513000                                                                                <-----------GT1                                                                                --------->YAB1                                                                             --------->YAB1                                                                             <---------ICU4                                                                          --------->YAB1                                                                         <---------YAB1          ----------->GT1                                 --------->TOE1(3) <---------YAB1    -------  ----------->GT1  <----------DOF2                 ----------->TBP     --------->YAB1         <------ -->ARR11(3) >>>>>>>>>GT-1                ----------->GT1 --------->TOE2(3) --------->ICU4<----------   tagtttgaaaaatggttaatacttttaggcttatctaggtgaattagtgaattttaaaaaccttaagctcgactcataataataacaaaatactggggct  10513100                                         --------->ANAC46                                         --------->ANAC55(2)                                       <-----------GT1                                  <---------YAB1                                <--------HAHB4                                <---------ICU4                                -------->ATHB1                                --------->ATHB51                                --------->YAB1                                            <---------ARR14(2)       <------------AtMYB77    <---------ATHB12                                           --------->ARR14(2) -->At4g35610                  <---------ATHB51                                          --------->GLK1(1) ---At4g35610<---------YAB1    --------->ICU4                ------------>CBF       ----------->HVH21 -RAV1(1)<-----------TGA1  ------------>CBF     ------>ZmHOX2a(1)             ---------->DOF2   gaattagaaaccgtcattatacaaaaactttcaattattattcacgcgtcctccttgtactcgtccaatgtaagagaatgaaaagactgacatatccatt  10513200                                                    ------>MYB46(1)             --------->ARR14(2)            --------->HSFB2a(2)             <---------ARR11(3)          ------>MYB83                               <---------ARR14(2)             <---------ARR14(2)     --------->REM1(1)                      <---------ALFIN1         -             --------->ARR11(3)     <---------ALFIN1------>MYB83          <---------ALFIN1          <         <------ZmHOX2a(1)        ----------->RAV1(1)                    --------->LBD16            -       <---------TOE2(3)  <-----------HVH21<---------HSFB2a(2)          --------->ANAC46            < <---------ZAT14         <----------DOF2 ------>MYB46(1)      <----------DOF2       --------->ARR14(2)   gagttctctgaggaatatcgtcgaacactttcactgcaacaccttccacaaaccaatctcttctctttcaatctccccaactctcaaatccgaatcacga  10513300                                         --------->CCA1(2)                         <-----------GT1 <------ZmHOX2a(2)                      --------->ARR14(2)--------->AGP1 -------->HSFC1(2)    <---------ARR14(2)--------->ARR14(2)                  <---------ICU4 ---------HSFB2a(1) --------->LBD16     <---------ARR14(2)                 <---------ATHB12     <---- -------->HSFB2a(1)<---------ANAC55(2)  --------->ARR11(3)           <--------ZAP1          ------>ZmHOX2a(1) ---------HSFC1(2) --------->ANAC55(2)  <---------ARR11(3)           <-----------HVH21   ------>ZmHOX2a(1)   gaaccttcttcgacccaagacccgtattcactactcaaacaagatccagtcgatatatgtctctcactctgggtcaaatcattctcttctcctccttctg  10513400                                                                                     <----------DOF2                                                                                    <---------HSFC1(2)                                                                                    --------->HSFC1(2)                                                                                    <---------HSFB2a(1)                                                                                  --------->ARR14(2)                                                                                  <---------ARR14(2)                                                                                  <-----------ARR10                                                                                --------->LBD16                                                                               --------->ANAC46------                                                                           ----------->HVH21   ------                                                                         <---------bZIP60(1)   ------                                                                         --------->TGA1a  --------->ANAC46                                                              ------->TEIL<-----------HVH21   -------                    <----------DOF2                         ------->GAMYB--------->bZIP60(1)  <------         ------->TEIL                                       =======================MYC_MYB<---------ALFIN1     <---------HSFB2a(2)                                   --------->MYB46(3) <---------LBD16--------     --------->HSFB2a(2)                           <---------ANAC58 <---------At4g35610  --------->MYB46(3)     --------->HSFC1(1)        <---------ARR14(2)  <---------ANAC58 <---------ZAT18 --------->HSFB2a(1)     <---------HSFC1(1)        --------->ARR14(2) <---------At4g35610    =======================bZIP_DOF <----------DOF2   <---------ANAC58  <----------DOF2       <---------MYB52(2) --------->At4g35610 -----At4g35610    <---------ANAC58  ==============================================bZIP_DOF ---------   ctactttctcgaacctcactggctttctctccaaattcgatttatgggtcttagcttatcaacgaacttgtgctcatgtcaccggaactttcccaccgcg  10513500                                                                 <------NtERF2                                                                ------>NtERF2                                                         --------->ARR14(2)                                                         <---------ARR14(2)                                                        ------->MYC3                                                        <-------MYC2                                                        <-------MYC3                                                        ------->MYC2 --->ANAC58                                            --------->ANAC46                            -- --->ANAC58                                       ----------->HVH21                                -- --->ANAC46                                       <---------MYB52(1)                               <- -->LBD16               <---------MYB52(1)       <-------GAMYB<---------MYB52(1)                   -- ---LBD16              <---------SPL7            <-----------HVH21                            <------ ->DEAR3(1)     <---------ZAT18            ---------->DOF2 <---------LBD16<---------ANAC46    <------ >ANAC46 --------->AtLEC2 --------->MYB52(2) --------->ANAC46--------->LBD16                ------->TEIL   caatgctattcatgccaatgccctccgttcgcttctctccctccaaaacgccgttacacgttccggtggcaaatttcggtggaacgataagatgaatcag  10513600                                                                      <---------YAB1                -              ----------->GT1--------->ATHB12                         ===============================     <------ZmHOX2a(1) --------->TOE2(3)                              <------ZmHOX2a(2)             < ------->ANAC58----------->GT1                                       <---------ARR11(3)            <- ------->ANAC55(2)   --------->ARR11(3)                              --------->ARR11(3)         <---- --------ANAC55(2)   <---------ARR11(3)                    <------MYB83--------->ATHB12       <------ ------->ANAC58<------ZmHOX2a(1)   <---------ANAC46        <------MYB46(1)                <---------GLK1(2) ---------AtSPL3  --------->AHL20(2)               ---------->DOF2  <------ZmHOX2a(1)<---------ARR14(2) ---ICU4   ---------->DOF2  <---------ATHB12     --------->ETT(2)<------ZmHOX2a(1)   --------->ARR14(2)   tacgtaaggagcccaaaggataaaatctcaatgaatggtggagagggtatgtcgaaagggaaggtaaggaggatcattgagtctgaagaaccgatttttc  10513700  Previous    Next  AGI:  At1g30010.1    Description:  intron maturase, type II family protein. similar to intron maturase, type II family protein [Arabidopsis thaliana] (TAIR:AT5G46920.1); similar to intron maturase, type II family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA97559.1); similar to hypothetical protein OsJ_034449 [Oryza sativa (japonica cultivar-group)] (GB:EAZ20240.1); similar to hypothetical protein OsI_036808 [Oryza sativa (indica cultivar-group)] (GB:EAY82849.1); contains InterPro domain RNA-directed DNA polymerase (reverse transcriptase); (InterPro:IPR000477); contains InterPro domain Intron maturase, type II; (InterPro:IPR000442) Range:  from: 10513178    to: 10516369    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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