Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                               --------->ANAC58                                             --------->ANAC58                                      ------>ZmHOX2a(1)                                    ------>ZmHOX2a(2)                                   <------ZmHOX2a(2)                                  <---------GLK1(2)                                  <---------ARR11(3)                                  --------->ARR11(3)                                  --------->ARR14(2)               <---------At4g35610                                  --------->AGP1------->TEIL       --------->At4g35610              - ---------YAB1                    <---------ARR14(2)         <---------ANAC58                <------- ----ICU4                        <---------At4g35610         <---------ANAC58         <-----------GT1   ttctgagagactactaccgagaacaaatcaaattcagatcctacagcaagtacctcgttgatggctagcatctgtccattactcttcttcaccttctttt  10499000                                                                                                    -                                                                                                    <        <---------------AtSPL8                                                                  <----   ------>ZmHOX2a(1)                                                                           ------  --------------->AGL15                                                                     --------- ----------------->AGL3                                                                    <---------YAB1 ----->NtERF2                                                      --------->YAB1       <---------AHL20(2) ---DOF2--------------->AtSPL8 <-------TEIL        <---------ARR11(3)                 --------->GLK1(2)   gcctccttaagtagtacctgaattcaaaacacatacatgaagaaacgattcaatatcacaacgattcaaacatcatgaaattggtgagaatttatgataa  10499100                                         --------->WRKY38(1)                                       <-------GAMYB                                    <---------MYB52(1)                                  --------->TOE2(1)                             <---------ARR14(2)                             <---------ARR11(3)                        <--------P            <---------ARR14(2)    --------->TOE1(1)                   <---------ANAC58            --------->ARR14(2)------->TEIL                            <---------ANAC58       -------->P            <---------GLK1(2)                 <---------ARR11(3)    <---------MYB52(2)       --------->ARR14(2)                --------->ARR11(3) -------->AHL20(2)         ----------->ARR10                  <---------CCA1(2) ---------AHL20(2)         --------->ANAC58         <-------TEIL      <-------GAMYB        <------NtERF2 -----AHL20(2)     <---------ARR14(2) <---------MYB46(3)  ------>ZmHOX2a(1)             <---------MYB52(1) --->AHL20(2)      --------->ARR14(2) --------->MYB52(2)  ----------->GT1       <----------DOF2 <---- >YAB1--------->MYB52(1)   --------->ANAC58    <---------CCA1(2)     <---------MYB46(3)<-----------HVH21   aattaaactaaccagaacttggatttggcaagaacctcgttcgttgcccatagcttcatcctgtaaatctttggttgctcatctttctccgtcgggagag  10499200                                --------->YAB1                        <---------ZAT2                        <---------At4g35610           ---------->ID1                        --------->At4g35610      <---------GLK1(2)    ------>ZmHOX2a(1)   --------->ZAT2           --------->ARR14(2)               <---------ZAT18   --------->TOE1(2)  <-----------RAV1(2)        <---------ARR14(2)            ---------->DOF2   <---------SPL7<-----------RAV1(1)           ----------->ARR10            --------->TOE2(3)       < -----ZAT2       =================RAV        <------ZmHOX2a(2)    --------->MYB52(1)             <---   ctcgtcctacgacttggtactggtgcagctgcaattacaaaattccgatcagatttgtcgaaattagaaaacgggaaacatcaatgcgctaaattggaag  10499300                                                                             <---------ARR14(2)                                                                       --------->ATHB12                                                                      <---------YAB1                                                                      <---------ATHB12                                                                   --------->DEAR3(1)                                                                 ------>NtERF2                ------>NtERF2                                    --------->LBD16--------->TOE1(2)                --------->LBD16      <---------At5g28300         <---------At4g35610          -------        ---------->DOF2   <---------DOF5.7(2)                   --------->DEAR3(1)   <---------MYB52(1)     --------->At4g35610  --------->MYB52(1)                  <---------ATERF1(1)------>ZmHOX2a(1)    --------->GLK1(2)   --------->DOF5.7(2)    --------->ZAT6 ------>ZmHOX2a(1) --------->TOE2(2) ------ZmHOX2a(1)     <---------ZAT6<-----------GT1      <---------ANAC58    --------->ARR14(2) <---- ---ZmHOX2a(1)<---------LBD16   <---------ARR11(3)       <---------ANAC58<---------WOX13(1)   -------   gaggagaagctaaagctccggctagagttaacgagatgttaccctgataacactcattttcgtcctccgccgatgattgaatcctccgataatcgcaagc  10499400                                                                                     ------>ZmHOX2a(1)                                                                                   ------>ZmHOX2a(2)                                                                                  <------ZmHOX2a(2)                                                                                 <---------ARR14(2)       <---------RAP2.6(2)                                                       --------->ARR14(2)       <---------ANAC46                                                 <---------AHL20(2)      <---------LBD16                                                  --------->AHL20(2)   <---------ANAC58           ------>MYB83              --------->TOE2(3)        <---------ARR11(3)   <---------ANAC58     ----------->HVH21 ----------->GT1              <---------AHL20(2)        <<<< -->ANAC58 <----------DOF2    ------>MYB46(1) *TSS      --------->TOE1(3)  --------->ZAT6        >>>> -----ARR11(3)    --------->AHL20(2)---------->DOF2  <-----------GT1   --------->AHL20(1)    -------- -->ANAC58 <---------DAG2   <---------MYB59--------->YAB1     --------->TOE2(3)  --------->ARR11(3) <   tctattcttgcggcttttttttatatatgacctagctaaaaagaatgaaaattttaaaccctaatctcaaaaatttaatactagatcctacaggctaaag  10499500                         ------>MYB83                         ------>MYB46(1)                  ------->GAMYB                        <---------ALFIN1                  --------->YAB1               ---------->ID1                       ------->GAMYB                     --------->MYB46(3)           <-----------GT1                     --------->ANAC58                   -------->P              <---------RVE1(1)            <---------AHL20(2)    --------->YAB1       --------->WOX13(1)      --------->ARR14(2)           --------->AHL20(2)    <---------ATHB12  <-----------GT1             <---------ARR14(2) <<<<<<<<<<<<<LFY    --------->ANAC46         <---------GLK1(2)                <---------GLK1(2) ---- >>>>>>>>>>>>>LFY    --------->ANAC58         <---------ARR11(3)         --------->ARR14(2)    ------ -->DOF2<----------DOF2--------->MYB46(3)     --------->ARR11(3)         <---------ARR14(2)    <----- ------------CBF <-----------GT1 <---------YAB1<---------RVE1(1)   <-----------GT1<---------AHL20(2)-   cccattgggccttttaaatttacaacccactgcctataattctctacagatttttatcaaccatcaattttactgaattcggattttttttcgctatgat  10499600         --------->DAG2        ---------->DOF2     --------->YAB1        >>>>>>>>>TBF1                             <---------LBD16    <---------AHL20(2)     <---------------------WRI1        <-----------GT1 -->ZmHOX2a(2) <-------GAMYB              ---------->DOF2 ------->TEIL --->ARR11(3)  --------->REM1(2)  <----------ID1       <---------ANAC55(2)  <---------DAG2 ----ARR11(3) --------->ALFIN1 ---------->DOF2   --------->AtLEC2<----------DOF2<---------ANAC46 -------->AHL20(2) <---------ANAC46   ---------->DOF2  --------->ANAC55(2)  <----------DOF2----------   ctataaataataaagtgtgttgagtagaagaagaaaagcacaaagaaagacatgaaaacgtatttagcttttggggaactttttgtgtagcaatggtcaa  10499700                                       --------->MYB52(1)                                    ------>NtERF2                                  ----------------->AGL1                             <---------ARR11(3)                             <---------ARR14(2)                           XXXXXXXXXXXXXXXXXXXX>MIR861-3P     <---------------AGL15                           ----------->ARR10                  =======================================                <-----------GT1 --------->ANAC58              --------------->AGL15            --------->AHL20(1)  --------->ANAC58   ------->GAMYB            <---------AHL20(1)--------->CCA1(2)    ----------->RAV1(1)           <---------AHL20(2)            --------->AHL20(2)<---------GLK1(1)   --------->MYB46(3)            --------->AHL20(2)          <---------ARR11(3) --------->ARR14(2)  -------->P<-----------GT1 --------->YAB1          --------->AHL20(1) --------->ARR11(1) <-----------GT1           <---------YAB1      ------- ->GT1    <---------AHL20(1) --------->ARR11(3) --------->WOX13(1)  <---------AHL20(2)      ---------   aacaaatcacaaaatattttacatatagatagatatgccaccaagggaatcaaccacatatatacaatatttagttatgatataaaattcaacacaaagt  10499800                                           <---------ANAC46                                         ----------->GT1                        --------------->AGL15                  <---------ARR11(3)              --------->HSFB2a(2)   <---------ATHB12           --------->ARR11(3)      <-----------GT1   <---------------AGL15                 <---------CCA1(2)                 <---- =======================================MADS_MADS  --------->ARR11(3)                     --------->CCA1(2) ---->GT1     <---------HSFB2a(2)   --------->ICU4 <---------ARR11(3)                    --------->ARR11(3) ->DOF2<-----------GT1 ----------------->AGL2     --------->YAB1                         <---------ARR11(3)   tacaaatatttcccttctgtaactcactaaaatcagcaataactggtgtaaatgatattgatatatatctacgttttcgagtatatatgtagatatatat  10499900  Previous    Next  AGI:  At1g29965.1    Description:  60S ribosomal protein L18A (RPL18aA). similar to RPL18AA (60S RIBOSOMAL PROTEIN L18A-1), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G29970.2); similar to unknown [Populus trichocarpa] (GB:ABK93710.1); contains InterPro domain Ribosomal protein L18ae; (InterPro:IPR002670) Range:  from: 10498294    to: 10499446    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g29970.1    Description:  RPL18AA (60S RIBOSOMAL PROTEIN L18A-1). Identical to 60S ribosomal protein L18a-1 (RPL18AA) [Arabidopsis Thaliana] (GB:Q8L9S1;GB:Q9C8S2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G17080.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN82659.1); contains domain 60S RIBOSOMAL PROTEIN L18A (PTHR10052); contains domain 60S RIBOSOMAL PROTEIN L18A, PLANT (PTHR10052:SF2) Range:  from: 10499649    to: 10501436    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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