Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100       <---------ALFIN1                       --------->AHL20(2)            <---------AHL20(2)  --------->ANAC58                          --------->YAB1              <---------CCA1(1)  --------->ANAC58                --------->ZAT6                        <---------RVE1(1)  <---------bZIP60(1)      --------->AHL20(2)                          <---------GLK1(2)      -------  --------->bZIP60(1)      <---------AHL20(2)<---------AHL20(2)        --------->ARR11(3)     -------  --------->ANAC46<-----------RAV1(1)    --------->YAB1                <---------ARR11(3)     ------- -----------GT1 <----------DOF2 <-----------GT1                 --------->ANAC46 <-----------GT1   --   tatcacgacactcttatactttgttggatttaaataacactactaataaaaatgtgtcatctttctactccaagatttttttttatctaatctaacaagt  10491300                                                                  <---------AHL20(2)                                                             <---------ZAT14                                                             <---------ZAT18                        -                                                             --------->ZAT18                       -- ---->GT1                   <----------DOF2        <---------AHL20(2)                             --- -->ANAC58                 <---------DAG2          --------->AHL20(2)                           ----- -->ANAC58              <-----------GT1           --------->AHL20(2)                           ------ -------->DOF2      <----------DOF2         ------->TEIL <------ZmHOX2a(1)                   <-------   aaaaagacatattttgtccaagctttttacctttttatcttggatgaatcaaattaataggagtgcattttttttttttgaaaattccaaaaatttgcgg  10491400                                                              <---------ANAC58                                                              <---------ANAC46                                                              <---------ANAC58    <----------DOF2                                                           --------->DAG2         --------->TOE1(3)                                                          ---------->DOF2         --------->TOE2(3)                                                       --------->ANAC58        <---------AHL20(2)                                                       --------->ANAC58    -------->ATHB1                                                       --------->ANAC46    <---------ICU4        --------->ARR11(3)                         --------->ANAC46       <---------ATHB51 ---------->GT1                                    --------->ANAC58       --------->AHL20(2) ------->DAG2                                      --------->ANAC58       <---------AHL20(2) ------->DOF2       <---------ALFIN1            <-------TEIL  ----------->GT1  <-----------GT1 ---->At5g28300<-----------GT1                 --------->CCA1(2)          --------->ICU4 --->LBD16 <----------DOF2                    --------->ARR14(2)     --------->ANAC58 --LBD16<---------ARR11(3)                    <---------ARR14(2)     --------->ANAC58   taaagttaaacatctttttgctccacatttgaaaaaacaaaacaagtagattcacgcacgaaaagcgtgaaacgaaattattaactttaaacaatgtttg  10491500                                                                                                   <-                    --------->ALFIN1                                                               --                    <---------ANAC58                                                        ---------                  <---------ANAC58                                    <----------ID1    ---------->DOF2                <---------ANAC46                               --------->ANAC58    --------------->AGL15              --------->ZAT14                                  --------->ANAC58   ----------------->AGL3              <---------ZAT14                --------->YAB1    ----------->GT1    ----------------->AGL2              --------->ZAT18    --------->ATHB12            --------->MYB52(1)  ----------->RAV1(1)    ----------->GT1 <---------ANAC58  <---------TOE2(3)      ------>MYB46(1)   --------->ZAT18-------  <---------ZAT14 <---------ANAC46   ---------->DOF2         ------>MYB83  --------->MYB52(1) -------  --------->ZAT14 <---------ANAC58 <---------YAB1          --------->AtMYB61  --------->RAP2.6(2)  --   tttgtgtagtgactagtgtagtgtgtgtgagtgagtgattaaagaaatgaaaatgggcaaaccaaacgaaaaaaaacaaaccgcaccagaaaaagaaagc  10491600                                                                                  ------>ZmHOX2a(2)                                                                                  ===================                                                                                  *TSS <<<<<<<<<TBF1                                                                                 ====================                                                               --------->ANAC46  <------ZmHOX2a(2)                                                             <---------ALFIN1   <---------AGP1                                                             --------->ANAC58   --------->AGP1                                                             --------->ANAC58   <---------ARR14(2) --------ALFIN1                                              --------->ANAC46   --------->ARR14(2) ------->ANAC58                                            <---------ALFIN1     <---------ARR11(3) ->DOF2                                                  ----------->RAV1(1)    --------->ARR11(3) -->ANAC58                <-----------GT1             <-----------GT1          <---------CCA1(2) -->ANAC58              <-----------GT1           <---------DAG2              ----------->ARR10   --- ------->ANAC58     ------>ZmHOX2a(1)             <----------DOF2          <----------DOF2<<<<<<<<<TBF1   cacgctcgctcgctctcttctccttatttctctacccttcccttctctctctctttttgccacacacatcattctctctttagatcttcttcttcttctc  10491700                                                                      <-----------HVH21                                                                     --------->ANAC46                                                                   --------->ANAC55(2)                                                        <----------DOF2        <-------TEIL                                                   ---------->DOF2 --------->ANAC58                                            --------->GLK1(2)      <---------ANAC55(2)                                           --------->ARR14(2)      --------->ANAC58 ====HOX2a_HOX2a         <---------DAG2    <---------ARR14(2)      --------->ANAC46       ---------->DOF2 ====HOX2a_HOX2a      <-----------GT1      <---------GLK1(2)     <-----------GT1--------->ATHB12 --->ZmHOX2a(1)  --------->AHL20(2)      ----------->ARR10   --------------------->WRI1 ------>ZmHOX2a(2)   ctctgtaacaacaaaacaaaaaaatcactctttcgaatttgatcagattcttctaaagctttagtttttacgcatcaccgattcatttgatccaaagggt  10491800                                                     ------>NtERF2                                                     <------NtERF2                                                    --------->ANAC58                                                    --------->ANAC58                                                    --------->ANAC46                                                    --------->RRTF1(3)                                                    --------->RAP2.6(2)                                                    --------->RRTF1(2)                                                    --------->DEAR3(1)                                                    --------->RAP2.3(2)                                                    --------->RAP2.3(3)                                                   --------->RRTF1(1)                                                   --------->RAP2.3(1)                                                  ------>NtERF2                                               <---------At5g28300                                              <-----------GT1                                   -----                                          <----------DOF2                                     <------                    ------->TEIL      --------------------->WRI1                              <------                 <---------YAB1       <----------DOF2--------->LBD16                          <------            --------->ANAC46      <----------DOF2--------->DEAR3(1)                   <-----------GT1           <---------LBD16   <---------At4g35610--------->DEAR3(2)      <------ZmHOX2a(1)<----------DOF2   ttttgatttcttctacggtatgaatgttttctgcttctttctttctttataccgccgcaatttctgacttattaggacttatatgttttttctttgtctt  10491900        <----------DOF2                             <------------CBF  <---------ICU4                                   --------->ATHB12  <---------------AtSPL8                          <---------YAB1                               <----- --------->ICU4                                 --------->At4g35610                    <---------ANAC58 ------>GT1                                     <---------At4g35610                    <---------ANAC58 ---ANAC58     --------->At5g28300    <---------TOE2(3)              <-----------GT1   <---------ANAC46 ---ANAC58----------->HVH21           <---------TOE1(3)--------->At4g35610      --------->KAN4(2) ---ANAC46--------->WRKY12         <---------AHL20(2)<---------WOX13(1)        <---------KAN4(1)   gtaattagtactttgacggtatctcataaatagctattttatggtttatcagatgattgctgaatttgatttttctattgaatgttctgtcttgtttatg  10492000                                         --------->ARR11(3)                                         <---------ARR11(3)                                       --------->ICU4                                  --------->ANAC55(2)                                  <---------ANAC46                  --------->AHL20(2) ---------->DOF2               --------->YAB1   ------>ZmHOX2a(2)<----------DOF2             <---------YAB1  <---------ICU4  <----------DOF2          --------->ICU4    <---------YAB1--------->GLK1(2)                <---------TOE1(3)     <---------ZAT6<-----------GT1<---------ANAC55(2)<-----------GT1       <---------TOE2(3) ----YAB1 <---------YAB1  --------->YAB1 <---------GLK1(2)         <----------DOF2      ------>ZmHOX2a(1)   tttgtttgtgttattattaataaactattcatgatcgcgtaaagattctttcttttaacaagtccaattcttttgttgaggttttgtttcctctatgtgt  10492100                                                                          ------>ZmHOX2a(2)         -                                                                          ===========================                                                                         ============================                                                                         <------ZmHOX2a(2)        <--                                                                        --------->ARR14(2)        ---                                                     ----------->GT1    <---------ARR14(2)      -----                    ----------->GT1          <---------ICU4          <---------HSFB2a(2)        <----               <---------MYB46(3)            --------->YAB1          --------->HSFB2a(2)      -------        <---------At4g35610 <---------YAB1  --------->ICU4          <---------LBD16     <----------DOF2   tctgttttgaagcagagttgttaagttattttgattttggtttgtgatcatgaaatcgaaaaacatttattctggatccgatgttaatgtctttagtcat  10492200  Previous    Next  AGI:  At1g29950.1    Description:  transcription factor/ transcription regulator. similar to hypothetical protein [Vitis vinifera] (GB:CAN76054.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66920.1); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) Range:  from: 10491682    to: 10494582    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g29951.1    Description:  CPuORF35 (Conserved peptide upstream open reading frame 35). similar to unnamed protein product [Vitis vinifera] (GB:CAO66921.1) Range:  from: 10491959    to: 10494582    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g29952.1    Description:  CPuORF34 (Conserved peptide upstream open reading frame 34) Range:  from: 10491959    to: 10494582    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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