Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                          ------>MYB46(1)                                                                        ------>MYB83                                                              ------>ZmHOX2a(2)                                                             --------->CCA1(2)                                                             <------ZmHOX2a(2)                    --------->STY1(2)                       --------->GLK1(2)                    --------->ZAT2--------->ANAC46          --------->ARR11(3)                    <---------ZAT2--------->ANAC58          --------->ARR14(3)                   ------>MYB83<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------->MYB46(3)                   ------>MYB46(1)--------->ANAC58          <---------AGP1                   --------->ANAC58                         <---------ARR14(3)          <---------ANAC58 --------->GLK1(1)                --------->ARR14(2)     --------->MYB52(1)          <---------ANAC58 <---------GLK1(1)                <---------ARR14(2)     ------>MYB46(1)        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                 <---------ARR11(3)     ------>MYB83     <----------CDC5<---------STY1(2)                     ----------->ARR10      <---------MYB59 -------->DOF2     --------->ANAC58                <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   aaaatgctctgagcgtgaaccaagctagggtttcccaagtaatcgagccctccatcgctgaagatctgtgaaccagccttgaaccaaactgcctctccaa  10475500                                                                --------->At4g35610                                                                <---------ZAT2                                                              ------->PIF5                                                              <-------PIF5                                                             --------->ZAT2                     <----                                                             ----------->RAV1(2)                <----                                                        --------->PCF2                      <--------                                                    <---------AtLEC2                        <--------                                        <---------STY1(1)  <---------ALFIN1                 <--------                        <---------LBD16 --------->STY1(1) <xxxxxxxxxxxxxxxxsmallRNA(le3)   --------->MYB52(2)                        <-----------RAV1(2)    <------NtERF2 <---------ZAT2              --------->ARR14(2)                  ---------->DOF2      <xxxxxxxxxxxxxxxxxxsmallRNA(si3)             --------->MYB52(1)            ------>ZmHOX2a(1)        ------>NtERF2  <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <---------ARR14(2)           <---------ANAC58         --------->DEAR3(1) <-----------TCP11(1)      <---------At4g35610           <---------ANAC58      --------->ANAC58  <---------ZAT2   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          ----------->RAV1(2)    --------->ANAC46  --------->ZAT2 <---------ANAC46 ----------->HVH21        <---------MYB52(1)       --------->ANAC58--------->LBD16--------->ZAT2   --------->At4g35610   acttgactccgttcctggccaaaagctcagggaagacgcagcctagggctccgagcatggcccacctgctgtggataacttctagctcacggttccttgc  10475600                         <---------ZAT2                         --------->At4g35610                         --------->ZAT2                         ----------->RAV1(2)                         <---------At4g35610                 <---------ARR14(2)                                  --------->At4g35610                 --------->ARR14(2)                                  <---------ZAT2             <------NtERF2                                          --------->MYB111(2)             <---------At4g35610                                --------->MYB59           <---------DEAR3(1)                                   <---------TOE2(3)           ---------->CDC5                                   <---------MYB52(1)           <-----------RAV1(2)                              --------->LBD16           <---------WRKY12                               <---------LBD16     <---------ANAC46    --------->ZAT2               --------->HSFB2a(1)     <---------LBD16     <---------At4g35610         <---------GLK1(1)    <---------LBD16    <-----------RAV1(2)           --------->GLK1(1)          --------->ANAC46 -----ANAC58 <---------LBD16                       <---------ZAT18  --------->MYB111(1) -----ANAC58 --------->At4g35610                 --------->ANAC46  <--------P   --------->ANAC58 -ANAC46   <---------WRKY38(1)                  --------->LBD16 --------->DAG2  --------->ANAC58 -ANAC58  --------->ATERF1(1)          --------->LBD16<---------HSFB2a(1)      <xxxxxxxxxxxxxxxxxxxsmallRNA(si3) -ANAC58 <-----------HVH21    <-----------HVH21<---------LBD16<--------P   ----------->HVH21 ------->TEIL   gaatgtctcggggtcagcggatagaccagctgtgtcccatccgtagtctccagggaactctccggtaaggtagctgggtgactcgccagagaatggaccc  10475700                                                                                   <---------At4g35610                                                                                   <------NtERF2                               <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)            --------->At4g35610                             --------->At4g35610                                   <xxxxxxxxxxxxxxxxsmallRNA(i)                          <xxxxxxxxxxxxxxxxxxsmallRNA(le3)                     --------->DEAR3(1)                    <---------SPL7                                            --------->ANAC58                   <---------ANAC58                                           --------->ANAC58                   <---------ANAC58                                           --------->ANAC46     <-                   <---------ANAC55(2)                                       <xxxxxxxxxxxxxxxxsmallRNA(s)                   --------->ANAC55(2)             <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        --                  ------>ZmHOX2a(2)               <---------ANAC46          <---------ALFIN1      <--                 <------ZmHOX2a(2)                <---------ANAC58   <xxxxxxxxxxxxxxxxxxsmallRNA(le3)                <---------ARR14(2)       ------->TEIL              <---------YAB1 --------->RAP2.6(2)                --------->ARR14(2) ----------->HVH21       ------->GAMYB<-----------HVH21         ===              <---------DEAR3(2)------>NtERF2<----------DOF2       ------>ZmHOX2a(1)        <------ZmHOX2a(1)           <-----------HVH21 <---------At4g35610  <---------ANAC58--------->TOE2(3)<---------ATERF1(1)    ----------->HVH21 --------->SPL7  <---------WOX13(1)----------->RAV1(1)<xxxxxxxxxxxxxxxxxxxxsmallRNA(l2)   aagtacttgactcggtcggatccgtaccatgggctgcctgatggaccctttggcttggcaacagtcttcctcattgtcacacggccgcttccaaggactt  10475800                                                                               <----------DOF2                                   ---------->DOF2                             <---------DAG2              --------->DAG2   ------>NtERF2                        <------NtERF2      <------NtERF2            --------->LBD16                      ------>NtERF2      <-----------RAV1(2)    <---------LBD16                       --------->RAP2.6(2)     ------>NtERF2         <---------ARR14(2)  <------ZmHOX2a(1)   ------>NtERF2     --------->LBD16       --------->ARR14(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --------At4g35610        <----------DOF2   <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ------->At4g35610       <---------DAG2<-----------RAV1(2)        <---------RAP2.6(2) ---------RAV1(1) <-------TEIL<---------LBD16--------->ALFIN1     <---------DEAR3(1) =================RAVxxxxxxxxxxxxxxxx>smallRNA(i)                --------->ATERF1(1)   ctgatgccgcaggggaaaggttcacagcctttccggcgaaagcaggggaggagagagccattgttgaggcggccattgaaacttttttgtgttttttttt  10475900                                                                           --------->MYB52(2)                                                                           <---------MYB46(3)                                                     --------->AHL20(2)  <---------MYB52(1)   <------                                             <---------ZAT6   --------->ARR11(3)             <-------                         --------->ATHB12    <-----------RAV1(1)<------------CBF<---------CCA1(2)   <---------YAB1        ----------->GT1   *TSS      <-----------TBP <-----------GT1        ---------   tttttatgactaacttgtgagtgagagtgattaaaactggttcgatagtgttggattatatagggatattgtaacgtttgttatatctgaagtaatcttt  10476000                                                        --------->WOX13(1)                                                    <xxxxxxxxxxxxxxxxsmallRNA(i)                                                  <---------TGA1a                                                  <---------ANAC58                                                  <---------ANAC58                                                  --------->ANAC55(2)                                                  <---------ANAC55(1)                      --------->ARR11(3)          --------->O2                      <---------ARR11(3)          <---------ANAC46                      <---------GLK1(2)           --------->TGA1a                    <---------TOE2(3)             <---------ANAC55(2)                      --------->ATHB12 ----DOF2           <---------TOE1(3)             <---------O2    --------->ZAT18         <---------YAB1 --ICU4  <------------CBF                    <---------ZAT6       <---------ZAT18        <-----------GT1 >ICU4  --------->ATHB12        <-----------GT1   <---------bZIP60(2)             <---------YAB1  ---   atctgttcattcattggattttaagatttttgttttatcgtttagtagtcttacgtggcaatctctagtccaccagcatttgttttgattttttcattgc  10476100                                                                           --------->YAB1                                                                    ----------->HVH21                                                                  <---------O2  <---------YAB1                                               --------->ARR14(2) --------->TGA1a                                <---------ATHB12                  ===================================MYC_MYB                          --------->ANAC46    --------->At5g28300 --------->O2--------->ATHB12   <---                      --------->CCA1(2)      ----------->GT1<---------ALFIN1 --------->ICU4  ------->GAMYB                   --------->ANAC58       ------------>AtMYB77    <---------TGA1a        --------->MYB46(3) --->NtERF2        --------->ANAC58       ==================================MYC_MYB      --------->REM1(1)   agccaagcgttttgtgaccacaagttatgagccactgaatacttcaacggttacacttacttacaccctcgtgacaagaatgatttttgctacaacccaa  10476200                                                                   --------->TOE2(3)                                                             ----------->GT1                                             ------>ZmHOX2a(2)  <-----------GT1                                         <---------YAB1     --------->DAG2                                       <---------At4g35610 ---------->DOF2              <---------ALFIN1         ---------->DOF2              <---------YAB1   <---------YAB1  <---------YAB1--------->MYB46(3)      --------->TOE2(3)            --------->GLK1(2)  --------->AHL20(2)  ---------->DOF2 ------ATHB12   <-----------GT1   <---------GLK1(2)--------->TOE2(3)<---------YAB1 <-----------GT1   taactaaaacttaaagtataacattttgaaaatatagattctgatgatcgaaacattaatataaagtaacattataaaaagcatttacccacacataaat  10476300                                                       ------->TEIL                  <---------ICU4                    <---------YAB1                 --------->ICU4                   --------->YAB1            --------->YAB1                        <---------ICU4            ----------->GT1  --------->ZAT6      --------->ICU4                  <---------ATHB12       <---------YAB1        <---------ICU4      <---------ATHB12       <----------DOF2   <---------AHL20(1)       <---------YAB1       <---------ATHB51       <---------DAG2   --------->AHL20(1)     <---------ICU4<---------AHL20(2)         <-----------TGA1     --------->YAB1   <---------ARR11(3)     --------->YAB1--------->AHL20(2)         <-----------HVH21 --------->TOE2(3)   atcaatattttcaatggtaattagttcatcatcactaccagtttaatttcaattatgaatcgatttcatcgtcactttatccaataaccaaaataatctc  10476400  Previous    Next  AGI:  At1g29920.1    Description:  CAB2 (Chlorophyll a/b-binding protein 2); chlorophyll binding. Identical to Chlorophyll a-b binding protein 165/180, chloroplast precursor (LHCP-B) [Arabidopsis Thaliana] (GB:P04777;GB:P83754); similar to CAB3 (CHLOROPHYLL A/B BINDING PROTEIN 3), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT1G29910.1); similar to chloroplast chlorophyll a/b binding protein [Brassica napus] (GB:ABG29728.1); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344) Range:  from: 10474768    to: 10475943    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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