Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                         --------->LBD16                                                                             --------->At5g28300  <--                                                                            ----------->GT1      ---- -------TEIL                                                               --------->ZAT6   --------- -->LBD16                     --------->MYB52(1)--------->AHL20(2)    <---------ANAC55(2) ---------->DOF2   aattcatacaacatcatatgggatgagcaaattaacagaaaaatccaaaattaaaactttcaaacattgattcagtaacagtaaaaacccagaaaagtat  10387300                                                                                               <-----                                                                                             <-------                                                                                           <------MYB83                                                                                           <------MYB46(1)                                                                                           <---------MYB46(3)                                                                                          <---------DEAR3(1)                                                                                          <---------AtMYB61                             ----------->RAV1(1)                                          --------->ALFIN1                            --------->ANAC46       ------->TEIL                   <------MYB83 <-----                          --------->ANAC58         --------->GLK1(2)              <------MYB46(1)                          --------->ANAC46        --------->ARR11(3)              <---------ANAC46 -------AHL20(2)  --------->YAB1              ---------->DOF2                    --------->MYB46(2) ----->AHL20(2)  <---------ATHB12       >>>>>>>>>TBF1                            <---------MYB46(3) -->GT1--------->At4g35610--------->ANAC58 >>>>>>>>>TBF1       <---------ZAT6  <---------MYB52(1)   taaatcagtagctcaactaatcaaaaacacacaacacaagaagaagaagaaagaacctgattttagagttgaagagagactgtttggtgagggtggtgag  10387400                           --------->YAB1                           *TSS                                                           --------->HSFB2a(2)                        --------->YAB1                                                    <---------HSFB2a(2)                 --------->ANAC58                                                     <---------ANAC58                 --------->ANAC46                                                     <---------ANAC46                 --------->ANAC58                                           ----------->TBP                ------->GAMYB <------ZmHOX2a(1)<-------GAMYB            --------->At4g35610 ----ANAC58    <---------ALFIN1               <---------MYB46(3)        <---------At4g35610  <------ZmHOX2a(1) --ANAC46    ----------->RAV1(1)        <------------CBF      <-----------GT1         <---------ANAC58 ----ANAC58 --------->ANAC46 ----------->GT1  --------->MYB55(2)--------->ANAC46     ------>NtERF2   tgttttgtctgtccccaacacacaaataatcaggaaaaacaaaattggtggttaagagtgaatttcacgacttcagctacaaaacgctgcgtctaggaag  10387500                                                            <----------TaMYB80                                                            <---------GLK1(1)                                                            --------->CCA1(2)                                   <---------MYB59          --------->GLK1(1)                                <-----------GT1            <---------ARR14(2)                            --------->LBD16                --------->ARR14(2)                          <---------LBD16       --------->YAB1                                      <                        <---------ARR14(2)   --------->WOX13(1)        <---------TOE1(3)            <                        --------->ARR14(2)  <---------AHL20(2)   <----------DOF2                    <                      --------->LBD16       --------->AHL20(2)   --------------->AGL15       <-------                      ----------->HVH21    <---------ATHB12---------->TaMYB80                <-------                     --------->ANAC46      --------->AHL20(2)    <---------------AGL15      ---------                     --------->LBD16 ------>MYB46(1)    <---------ANAC55(2)          --------->GLK1(2)                    <---------LBD16<---------MYB46(2)  <---------LBD16 <---------TOE2(3)    <--------                  <---------WRKY18(1)------>MYB83     --------->MYB52(1)            <---------GLK1(2)   attactggtctctctccccttgcccggacccggtttaccaaaccaataaatcaaaatcacggatatgctttttagggtttcgactcgattctgagatttt  10387600                 <----------DOF2             ---------->ID1         --------->ARR14(1)        --------->ARR14(2)        <---------GLK1(2)                   <---------At5g28300        <---------ARR14(2)                 <-----------GT1        --------->ARR11(1)          --------->LBD16                           --------->At4g35610 ---------ANAC58<---------ANAC46  <---------At4g35610                         <---------ZAT2 ---------ANAC46<---------ANAC58  <---------LBD16                             <---------At4g35610 ---------ANAC58<---------ANAC58  --------->At4g35610                   --------->ALFIN1 --CCA1(1)   <---------MYB52(1)----------->HVH21                      --------->ALFIN1 --RVE1(1) <---------MYB46(3) <-----------HVH21                       <---------ANAC46 >ARR11(3) --------->MYB52(2) <-----------TGA1                        <---------ANAC58      <-------- -ARR11(3)<-------TEIL       --------->ANAC46                         <---------ANAC58      ---------   ttgcttgcaagattcgttgcttttgtgttctccgtcaccggagttttaccatcgtgaaatggtgcgattgtggtgtgggaagctcagactttggaaaccc  10387700                                                   --------->GLK1(1)                                                   <---------GLK1(1)                       <---------ZAT2                                                   --------->ZAT2                          --------->ZAT2                                                   <---------ZAT2                          <------NtERF2                                             <---------MYB46(3)                            --------->At4g35610               --------->ANAC46              <------MYB83                                  <---------At4g35610        --------->MYB52(2)                   <------MYB46(1)                              <<<<<<<<<AtERF-4      <---------MYB52(1)                    --------->MYB55(2)                            <<<<<<<<<AtERF-3      --------->DOF5.7(2)                   --------->ALFIN1--------->YAB1       --------->DAG2    <---------ANAC58        <---------ZAT2  <---------DEAR3(1)              =========================    <---------ZAT6          --------->At4g35610    --------->At4g35610      ------>ZmHOX2a(1)       <    <---------ANAC58        --------->ZAT2  <---------AtMYB61              --------->TOE2(3)       -- -GLK1(1)--------->At4g35610<---------At4g35610    <---------At4g35610     --------------->AGL15   <- >GLK1(1)<---------At4g35610----------->RAV1(2)--------->ALFIN1   <---------ICU4---------->DOF2   ---   tatttagcgttagctacacagagtagaaacagctggttctgttcgggtggtggagctccctctcatcatcttcacatcctcaaaaagtatggcagctcag  10387800                                                                    <------MYB83                                                 <XXXXXXXXXXXXXXXXXXXXMIR397A                                           <---------ALFIN1         <------MYB46(1)              --------->WOX13(1)           --------->ANAC58        --------->MYB111(1) ======HOX2a_HOX2a                         --------->ANAC58        --------->MYB46(2)            <--- ------ZmHOX2a(2)                       --------->ARR14(2)         --------->MYB59               ---- ------->ARR11(3)                     --------->LBD16             <--------P           <---------GLK1(2) --------ARR11(3)                    --------->RAP2.6(2)        --------->YAB1    --------->MYB52(1) ------>GLK1(1)                     <---------LBD16      --------->GLK1(1)        ----------->RAV1(1)   agatcacagagatgatcaatcggtataagcgaaacgtagccggacacacattgacgcagaattcaatggtaggtcagtacaaaacaacagtttctccaag  10387900                                                                                 <---------ANAC46            <-----------GT1                                                <---------TOE2(3)         ----------->GT1             <---------ANAC55(2)            <---------TOE2(3)      --------->MYB52(1) --------RAV1(1)                     --------->ANAC55(2)     --------->At4g35610 <---------ANAC58 ----->ALFIN1 <---------YAB1      <---------MYB52(1)        --------->GLK1(2)    <---------ANAC58  <-   tgttgctcaaaatgttactattgagacatttgattcgttatgtattcaagggaattggagagaagctgtagaggttttagattacttggagaataagggt  10388000                              --------->At4g35610                 --------->ZAT2                              <---------At4g35610                 --------->At4g35610                         <---------ZAT6                 <----------DOF2                        <---------TOE2(3)             --------->HSFC1(2)                 --------->ATHB12                        <---------TOE1(3)             <---------HSFC1(2)        <---------YAB1           --------->ATHB12<--------P               <---------GLK1(2)     <---------MYB46(3) --------YAB1      <----------DOF2        ----------->GT1      <---------At4g35610      <---------YAB1   tatgctatggatttgattagacttttagggttagctaaactatgtggtaaaccagaagctttggaagcagctagagttgttcatgagtgtatcattgctc  10388100                            --------->ANAC58                            --------->ANAC58                 <-----------RAV1(1)                       --------->ANAC58               <-------GAMYB                       --------->ANAC58              --------->MYB55(2)                   <---------ARR14(2)                  <------NtERF2                      <---------MYB46(3)<---------ZAT18    --------->ARR14(2)                <---------DEAR3(1)                   --------->MYB111(2) --------->At4g35610             <-----------RAV1(1)                    <--------P<-------GAMYB      --------->ALFIN1             <---------REM1(1)                   <---------YAB1   <---------------------WRI1       <-   tggtttctccttgtgatgttggcgctcgaaacgcgattatcgagatgtattctggttgttgttctgttgatgatgcgctcaaggtgttcgaagaaatgcc  10388200  Previous    Next  AGI:  At1g29700.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO42101.1); contains domain SSF56281 (SSF56281) Range:  from: 10384967    to: 10387427    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g29710.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G34370.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44189.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 10387659    to: 10389086    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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