Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                <------NtERF2                                              <xxxxxxxxxxxxxxxxsmallRNA(i) --------->ICU4                                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                             --------->LBD16               <---------YAB1                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                            --------->DEAR3(1)      <-------GAMYB                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                           xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)               <xxxxxxx                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <-----------GT1    <------ZmHOX2a(1)                      <---------LBD16         <---------DEAR3(1)------->GAMYB ---------O2<----------DOF2    xxxxxxxxxxxxxxxx>smallRNA(s)        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) ---------bZIP60(2)<-------GAMYB  <------NtERF2       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)----------- ---------ANAC46  <---------DEAR3(2)     ------>ZmHOX2a(2)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) ------->TGA1    <---------At1g77200    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)     <-----------GT1    - ------->HVH21   --------->ETT(1)xxxxxxxxxxxxxxxx>smallRNA(s)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   tgacgaggaaatgactttgtcggtagaaaactcgtcgggatgatcgccggagtcgagatgatgttatcggcgttgtgatgattttaactgtccagataaa  10349100                          <---------ANAC58                          <---------ANAC46                          <---------ANAC58                                                        ---                      <---------ARR14(2)--------->HSFC1(2)                                     ------                     --------->ATHB12   <---------HSFC1(2)                                    xxxxxxx    --------->At5g28300  <---------MYB46(3)                                          --------->AHL20(2)   ----------->GT1   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                       --------->AHL20(2) xxxxxxxxxsmallRNA(i)<------ZmHOX2a(1)  --------->HSFB2a(1)                      <---------AHL20(2) >GT1              <---------TOE1(3)    <---------HSFB2a(1)                  --------->AHL20(2)<xxxxx ------>TEIL  <---------ANAC46    ---------->DOF2                        <---------TOE2(3)   --------   tgaaactgtaaaatcgtcgtgaaggattgggtgagaaaaagaagtttctcacaaattggttttagtttagagattgagattaaaaaattaaaccgaaaac  10349200                                                                                                   <x                                                                                                   --                                                                                                   <x                                                                                                   xx                                     ----------->GT1                                              xxx                                     xxxxxxxxxxxxxxxx>smallRNA(i)                                 xxx                                    --------->LBD16                                               xxx                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                               xxx                            <---------ATHB12                                                      xxx                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                        -------------                         --------->TOE1(2)                              <---------TOE2(3)   <--------                         --------->TOE2(2)                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                        --------->MYB46(3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)      <------------            <------MYB46(1)------>MYB83      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)      --------------            <------MYB83xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)           --------->MYB59--------->MYB52(1) ----------->GT1           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         <<<<<<<<<MYB98 xxxxxxxxxxxxxxxx>smallRNA(i)                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         <------------- ------>LBD16          >>>>>>>>>>MYB80--------->At5g28300        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --->MYB52(1)    ----------->GT1  <---------LBD16              --------->DAG2   ---------->DOF2  xxxx xxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <---------YAB1    <------------- xxxxxxxxxxxxxxxxxsmallRNA(se3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) -->DOF2 <---------MYB52(1)------>MYB46(1)   --------->YAB1   ---------->DOF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   cggctaaatttgttaggttttgttaaaccaacgatttcagggtaaaatggtaattctactgagttaaagtgattaatgtttttaaagtgcctatttatgg  10349300                      <---------ANAC46                      <---------ANAC55(2)                      <---------ANAC58                      --------->ANAC55(2)                      <---------ANAC58                      <---------ANAC55(1)                  <----------DOF2                 <----------DOF2                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                ----------------->AGL1           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     xxxxxxxxxxxxxxxx>smallRNA(s)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   xxxxxxxxxxxxxxxx>smallRNA(i)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) -------->DOF2 <---------ZAT18 xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      --------->AHL20(1) xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      <---------AHL20(2) xxxxxxxxxxxxx>smallRNA(i)                --------->AHL20(2) xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      <---------AHL20(2) xxxxxxxxxxxxxxxxxxx>smallRNA(le3)       --------->AHL20(2) xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->ANAC46       <---------AHL20(2) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->ANAC58       <---------YAB1    --------->ARR11(3) -->AGL15xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           --------->YAB1      --------->GLK1(2) -ICU4 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     --------->YAB1             <---------ARR11(3) ---AGL15xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   <---------YAB1             --------->RVE1(1) --->AGL3xxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------AHL20(1)               --------->CCA1(1) ----AGL2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->AHL20(2)<---------YAB1 xxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->ANAC58  <----------DOF2  --------->AHL20(2)      <------ ----AGL3xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->YAB1  <---------AHL20(2)   --------->HSFB2a(2)   ctaaagtttcaaaatagtgcctttacgtgtaatattctcgcaaataaattataatcttttataatttatgaattaaaaaatctttcgagagtctttggtc  10349400                                    --------->LBD16                                    ------>NtERF2                                   --------->ANAC46                                   --------->ANAC58                  --------->TOE2(3)--------->ANAC58                  <---------------AGL15                  --------------->AGL15        ----------->GT1           <---------LBD16    <-----------ARR10          <-----------GT1    <---------ARR14(2)       <---------HSFC1(2)    --------->GLK1(2)        --------->HSFC1(2)       --------->ANAC58                 ------>ZmHOX2a(1)    --------->ARR11(3)       <---------HSFB2a(1)      --------->ANAC58             --------->ARR14(2)    <---------ARR11(3)       --------->HSFB2a(1)      --------->ANAC46             <---------ARR14(2)    --------->ARR14(2)  --------->YAB1              *TSS <---------ALFIN1xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <---------GLK1(2)           --------->ETT(2)  --------->LBD16   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <---------ARR14(2)         <---------------------WRI1     <- -----HVH21      ----------------->AGL2  --------->ARR14(2)  ------>ZmHOX2a(1) <-----------RAV1(2) <-   agagaaaatctggtcaaaatccctaattagaattttcccgccagatttgtcaaaacacccctcctcgattgtcgatacagtccaggttcctgaaatgttc  10349500              <---------TOE1(3)              <---------TOE2(3)        <------NtERF2                        <---------ARR14(2)       ----------->RAV1(1)                   --------->ARR14(2)       ------>NtERF2                     <-------TEIL      --------->ETT(2)                 <---------ARR14(2)                                     <------      <---------ETT(2)                 --------->ARR14(2)      ----------->GT1               <------- ----------HVH21                       <---------GLK1(2)    <------ZmHOX2a(1)               <-------GAMYB ----------TGA1                   ------>ZmHOX2a(1)     <------ZmHOX2a(1)            <----------DOF2   tcgtcagggcgacattagggtttcttcattcccgtccttcagattcgtatttgaaacaggaaggagagaaaaatgggtatacaagggcttttgccgttgt  10349600                                                            <---------ANAC55(2)                                                            --------->ANAC55(2)                                                           <-------TEIL                                                       <---------ETT(2)                                                      <------NtERF2                                                     ------>NtERF2                                                   --------->RAP2.3(1)                                                   <------NtERF2  <---------ICU4                                                   --------->ATERF1(1)         <---------------AtSPL3                   ------>NtERF2  <-------TEIL         <---------------AtSPL8                   <---------RAP2.3(1)       --------->YAB1                            --------->DEAR3(1)      <---------ATHB51         --------->At4g35610<---------ATERF1(1)                <---------DAG2 ---MYB46(3)        --------->YAB1     <-------GAMYB--------->DEAR3(1)               <----------DOF2 --MYB52(1)        <-------TEIL--------->ZAT2    <---------DEAR3(1)          ---------->DOF2   tgaaatcgataatggtaccgattcatatcaaggagctcgagggttgtatcgtcgccgtcgatacatattcatggctacacaaaggggctttatcttgtag  10349700                                                                         --------->ARR14(2)                                                                         <---------ARR11(3)                                                                         --------->ARR11(3)                                   <---------CCA1(2)                     <---------ARR14(2)                                <-------TEIL                           --------->LBD16                               --------->ARR14(2)                    ----------------->AGL3                               <---------ARR14(2)          <---------WOX13(1)                      ------>MYB46(1)                     <---------ANAC58                      ------>MYB83 ---------->ID1         <---------ANAC46         --------->ARR11(3)                     --------->ANAC46                     <---------ANAC58--------->CCA1(2)   --------->ZAT18  --------->MYB46(3)          ------>ZmHOX2a(1)    ----------------->AGL2   <---------ZAT14  <---------MYB55(2)      <---------ALFIN1      ------->TEIL  <---------WOX13(1)   ccgagagctctgcaagggattacccaccaagaggttcgtctctctccctcctctcaagttgcttgatgaatcccagatatagattgatattgattttggt  10349800                                                                                            <--------                   <------MYB83                         --------->MYB46(2)                 <---------YAB1                   <------MYB46(1)             ------>ZmHOX2a(1)                           --------->ICU4                 --------->ALFIN1             <---------MYB59                         ----------->GT1             ---------->DOF2   <---------HSFB2a(2)      --------->MYB59         <----------DOF2      <---------ATHB12         --------->HSFB2a(2)    <---------MYB52(1)       <---------DAG2 ----------------->AGL1  <----------DOF2     ----------------->AGL1            <---------------AGL15   tttgcccaattagtagaaagtgggtttctttgtctcgaagtctatggtcctaattcgttaggcaaactctgaaaaatcaaaccttttctggttattattt  10349900                                                                                                  ---                                                                                               <-----                                                                                               <-----                                                                                               <-----                                                                                               ------                                                                   <---------GLK1(2)           <-----                                                                <---------HSFC1(1)             <-----                                                                --------->HSFB2a(2)            <-----                                          ------>MYB83          >>>>>>>ZML2                  <-------                                        <---------MYB59         <---------HSFB2a(2)       <------MYB83                                 <---------ANAC55(2)            --------->HSFC1(1)        <---------ANAC58                                 <------MYB83            <---------ANAC58                 <---------ANAC58                                 <------MYB46(1)         <---------ANAC46                 <------MYB46(1)                                --------->MYB111(1)  --------->CCA1(2)               <---------MYB46(3)                                --------->MYB59     --------->ARR14(2)             <---------ANAC58                                --------->MYB46(2)  --------->ARR11(3)             <---------ANAC58 <                              <---------MYB52(1)    --------->ARR11(1)        <---------MYB52(1) <---                          <------ZmHOX2a(1)         <---------ARR14(2) <-----------GT1   --------->MYB59 -AHL20(2)              <---------TOE2(3) ------>MYB46(1)<---------ANAC58<-----------GT1 <---------MYB46(3)   gatgggcatttcgatttctatctcttgaggatgttaggtaaaccaaactcgaaagatttgggtgttctagaattttcaccattaggcttgttgggtaacg  10350000  Previous    Next  AGI:  At1g29620.1    Description:  cytochrome-c oxidase. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G32720.1); contains domain PTHR11387:SF3 (PTHR11387:SF3); contains domain PTHR11387 (PTHR11387) Range:  from: 10347349    to: 10349003    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g29630.1    Description:  nuclease. Identical to Exonuclease 1 (EXO1) [Arabidopsis Thaliana] (GB:Q8L6Z7;GB:Q9C7N8); similar to exonuclease, putative [Arabidopsis thaliana] (TAIR:AT1G18090.2); similar to exonuclease, putative [Arabidopsis thaliana] (TAIR:AT1G18090.1); similar to Os01g0777300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044421.1); similar to hypothetical protein OsJ_003562 [Oryza sativa (japonica cultivar-group)] (GB:EAZ13737.1); contains InterPro domain XPG N-terminal; (InterPro:IPR006085); contains InterPro domain XPG I; (InterPro:IPR006086); contains InterPro domain DNA repair protein (XPGC)/yeast Rad; (InterPro:IPR006084) Range:  from: 10349452    to: 10353722    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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