Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                   <---------ARR14(2)                                 --------->ARR14(2)                             <---------LBD16                            ------>ZmHOX2a(1)                            <---------LBD16                         ------>ZmHOX2a(1)                     --------->ARR14(2)                                        --------->At4g35610                    --------->GLK1(1)                                          --------->ZAT2                    <---------GLK1(1)                                       <---------ZAT2                <---------HSFC1(1)                                          --------->At4g35610    --                <---------HSFB2a(2)                                ---------->DOF2              ----- -----MYB52(1)  --------->HSFC1(1)--------->CCA1(2)          --------->MYB46(3)<---------At4g35610<-- --->TOE2(3)    --------->HSFB2a(2)<-------TEIL            <-----------GT1  <---------At4g35610<-----   tagtaattaagtcgatttcgagaaatcctcctcgggatacatgaaaaccccaggcccaaattaacaatccaaagacacagcagctcaaacaaatagagga  10273400                                                   <-------TEIL                                          <---------ANAC46                                       --------->ARR14(2)                                       <---------ARR14(2) <---------ZAT14                                    <------------MYB.PH3(1)                                  --------->MYB52(1)      --------->ZAT14                                 ----------->HVH21 ------>ZmHOX2a(2)                         <------ZmHOX2a(1)                            <------NtERF2 <---------ANAC58--------->ZAT18         ==================HOX2a_HOX2a           <------ZmHOX2a(1)--------->ATERF1(1)  --------->ARR14(2)               ------>ZmHOX2a(2)     --------->DAG2        <---------ATERF1(1)   <---------ARR14(2)              ===================HOX2a_HOX2a    ---------->DOF2       <---------DEAR3(1)    <------ZmHOX2a(1)                <---------GLK1(1) <------ZmHOX2a(1)       =================================HOX2a_HOX2a            <------ZmHOX2a(2) --------->GT1           ================================HOX2a_HOX2a            <---------AGP1 ---->ALFIN1<---------ARR14(2)  <---------MYB52(2)<------ZmHOX2a(2)   --------->YAB1      <---------- ----ZmHOX2a(1)          <------ZmHOX2a(1)<---------ANAC58<---------ZAT18       --------->ARR11(3) -ZmHOX2a(1)--------->ARR14(2)------>NtERF2 <---------MYB52(1)  <----------DOF2 <---------ARR11(3)  <   ggaggaaaaaggaggaaccttgagagaggaggcgactaacggtttcgttaggatccatattgcactctttaagcatagcatagatctcagcctcaggaga  10273500                                                                              ------>NtERF2                                                                              --------->ORA47(1)                                                                             --------->DREB2C(2)                                                                             ----------->HVH21                                                                             --------->DEAR4(1)                                                                             --------->DEAR3(1)                                                                            --------->ORA47(2)                                                                            --------->RAP2.3(1)                                                                            <------NtERF2                                                                            --------->DEAR3(2)                                                                            --------->ATERF1(1)                                                                           --------->ABI4(1)                                                                           ------>NtERF2                                                                          --------->RAP2.6(2)                                                                          --------->ATERF1(2)                                                                          --------->DEAR3(1)                                                                          <---------DEAR3(1)                                                                          <---------ATERF1(2)                                                                          --------->RAP2.3(3)                                                                          --------->RRTF1(3)                                                                          --------->RRTF1(2)                                                --------->ARR11(3)        --------->RAP2.3(2)                                                <---------ARR11(3)       --------->RAP2.6(1)                                                <---------ARR14(2)       --------->ATERF1(1)                                                --------->ARR14(2)       --------->ORA47(2)                                               <---------GLK1(1)         --------->RRTF1(1)                                               --------->HSFB2a(1)       --------->DEAR4(2)                                               <---------HSFB2a(1)       --------->ERF1                                               <---------KAN4(1)         --------->RAP2.3(1)                                               --------->GLK1(1)        --------->ABI4(1)                                               --------->KAN4(1)        --------->LBD16                                              ---------->TaMYB80        ------>NtERF2                                              <---------KAN4(2)         --------->At4g35610                                          --------->ANAC58             <---------ALFIN1                                          --------->ANAC55(2)   <---------ANAC58                                          --------->ANAC58  --------------------->WRI1 <---------ZAT2                                       ----------->HVH21    <----------DOF2<---------ATERF1(1)                                       ----------->TGA1<---------GLK1(1)<---------ATERF1(1)                                --------->HSFB2a(2)    --------->GLK1(1)<---------At4g35610                     <-----------GT1 ----------->RAV1(2)   <---------ANAC58<---------At4g35610      <                  --------------->AtSPL8--------->MYB52(1) <---------ANAC58--------->At4g35610  <----           --------->WRKY18(1)  <---------HSFC1(1)  ------>ZmHOX2a(1)  --------->ANAC46<---------At4g35610           <---------MYB52(1)   <---------HSFB2a(2) --------->LBD16    --------->DEAR3(1) <---------At4g35610 -RAV1(2) <-----------HVH21  <-----------GT1 <---------GLK1(2)  <---------ANAC58       --------->At4g35610 -----------GT1  <----------DOF2--------->HSFC1(1) --------->TOE2(3)  <---------LBD16 <-----------RAV1(1)   gtttacaatttccgtcaagctttgtactatttttctagaccctgacggaatatcctgaattcctttccttgctccgccgccgaccttgctgctgctcata  10273600              ------>NtERF2           --------->At4g35610           --------->ZAT2           <---------ZAT2         --------->SPL7                                                  <---------ZAT18        <---------MYB52(1)                      ----------->HVH21       <---------RAP2.6(2)       <---------SPL7                          ------>ZmHOX2a(2)        ---------->ID1    --------->LBD16                           <------ZmHOX2a(2)       <-----------RAV1(1)    ------>NtERF2                             --------->At4g35610  <----------DOF2   --------->ANAC46                          <---------AGP1--------->MYB52(1)  --------->MYB46(3)                         --------->ARR14(2)  <---------HSFC1(2)  <---------LBD16                            <---------ARR14(2)  --------->HSFC1(2) -----------GT1                             <---------CCA1(2)--------->ANAC46 -----ICU4 <---------At4g35610              <---------ARR14(1)  ------->TEIL                 ------>NtERF2   tttatccgccgtaagctgcctctctctctctctctctcactatatcggatctgaaggaaataaacgaagcttttgtggccttctctcagtcgcgacgaca  10273700                                                                                   --------->HSFB2a(2)                                                                               --------->TOE2(3)                                                                             --------------->AGL15                                 --------->ARR11(3)                         <-----------GT1                                 <---------ARR11(3)               <---------GLK1(2)<---------HSFB2a(2)                                <---------CCA1(2)                 --------->ARR14(2)                              --------->CCA1(2)                   <---------ARR11(3)                 <---------At4g35610                              <---------ARR14(2)                 --------->At4g35610               --------->ANAC46       *TSS <---------DAG2            --------->ANAC58 --------->ARR11(3)    --------->ANAC58    <-----------GT1             <-            --------->ANAC58 <---------ARR11(3)    --------->ANAC58<---------RVE1(1)               <-   atacgaagaacaccaaggaagctcaagggaagatatatctctctctgtagaaaacgaaaccctctccagattttttcttcaccttatagaaaaaaaaaca  10273800                             <----------DOF2                  <-----------GT1                  ---------->ID1  <---------AHL20(2)          <----------DOF2   <---------DAG2       ---------->ID1  <----------DOF2                                                      <--------     <------------------------ANAC81             <---------ANAC55(2)                   --------->AHL20(2)    <----------DOF2  ------>ZmHOX2a(1)         <-----------GT1             --------->At4g35610------>MYB83  <------------------------ANAC81--------->AHL20(2)  ------->TEIL          --------->ZAT2 XXXXXXXXXXX --------DAG2<------------------------ANAC81<---------ICU4--------->ARR14(2)   <---------ZAT6 ------>MYB46(1) ---------DOF2   <-----------GT1 <---------AHL20(2)<---------ZAT14         <---------ZAT2<-----------GT1   acttttcttttcctttttttttcctctttgcctttttaaatttgaaaaattactgaaccggttctctcgtttaaaccagcagtgctaaattaaaccgaac  10273900                               <---------WOX13(1)                   --------->YAB1--------->ATHB12      <------------CBF       --------->ATHB12 -MYB59         --------->YAB1<------------CBF         --------->At4g35610 XXXXXXXXX>MIR171B/C  ---------->DOF2                  <---------At4g35610     <------------CBF   caaaaccacattgcccaaggataataaagaacgattgatttgggtttatatcgcttccgatgaaagattactactagtttggattgcaactttggacaga  10274000                                                                        <-------TEIL                                                                       --------->CCA1(2)                                                                      --------->ARR11(3)            <----------DOF2                        <----------ID1     <---------ARR14(2)          ------->TEIL                      <---------TOE2(3)         --------->ARR14(2)      <-------MYC3                          --------->DAG2        ---------->DOF2      ------->MYC3    ---------->DOF2     ---------->DOF2    ------->TEIL   gttaagcacatgaactttctaagtaaaagaagaatgtattacaaaaaaggttagagacaaatgaaccaaaaagatacacttgtttacaagagaagagaag  10274100                    --------->ZAT2                    <---------ZAT2                    <---------MYB52(1)                --------->ANAC58                     <-------GAMYB                --------->ANAC58      <---------GLK1(2)              --------->GLK1(2)       <---------ARR14(2)              ------>MYB83                  <             <---------GLK1(2)        --------->ARR14(2)              -------->P         <---------ANAC58     ---------->DOF2----------->RAV1(2)    ------>ZmHOX2a(1)          ------>MYB46(1)    <---------ANAC58    --------->AHL20(2)               --------->At4g35610        <---------MYB52(1)  <----------DOF2 <   aaacaaataaagagagaatcgcaactgggcttaataagcagattcctcatgtttccgttgttttcagttacctacaagtctttcaactttgtcttgttcg  10274200                                                                                                    -               --------->ZAT14               --------->YAB1                            <---------ANAC55(2)         ----------->RAV1(1)               --------->AHL20(2)                       --------->ARR14(2)     --------->ANAC58   <---------------AtSPL3                                      --------->GLK1(2)     --------->ANAC58   --------------->AtSPL3                                      <---------ARR14(2)    --------->SPL7  ---------->DOF2   <---------ATHB12                    ------->TEIL<---------LBD16 ---------------AtSPL3  --------------->AtSPL8                       --------->At4g35610    --------- ---------------AtSPL8  <---------------AtSPL8                       <---------At4g35610--------->LBD16   atttagtacgacaacagtttacaaaagttgtacatctccaatctttaaaataacacagtcactagtaaggcagatgaacccttgagattccgcaaaaaga  10274300  Previous    Next  AGI:  At1g29350.1    Description:  similar to kinase-related [Arabidopsis thaliana] (TAIR:AT1G29370.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66902.1); contains InterPro domain Protein of unknown function DUF1296 (InterPro:IPR009719) Range:  from: 10268455    to: 10273774    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g29355.1    Description:  unknown protein Range:  from: 10274034    to: 10275525    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g29357.1    Description:  other RNA Range:  from: 10274088    to: 10275642    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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