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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                   <---------TOE1(2)
                                                                                  <-----------RAV1(2)
                                                                             --------->ZAT2
                                                                             <---------ZAT2
                                                                             --------->At4g35610
                                                                             <---------At4g35610
                                                                        <------MYB83
                                                                        <------MYB46(1)
                                                                       --------->MYB59
                                                                       <---------MYB46(3)
           <---------YAB1           <-----------GT1  ----------->GT1   --------->MYB46(2)
       --------->YAB1         <---------ICU4  <---------------AGL15   <---------MYB55(1)
 ----------->GT1              --------->YAB1  <----------DOF2        <---------MYB52(1)
--------->DOF2        --------->ANAC46  ----------->GT1            <---------ANAC55(2) <-------TEIL
---->DOF2<-----------GT1     <---------ATHB12 <---------DAG2  --------->AtMYB61 ------>NtERF2  -----
 
agaaaagaaataataccattgtttcacgtccaatctttataaccagtaactttatacagtgaaaaccatcacgtttggtaagctgccaggttcatcaaga  10108000
                                                  --------->MYB52(1)   <-----------GT1
                                                 ---------->DOF2    <---------ICU4
                                              --------->ANAC58     --------->ICU4
                                              --------->ANAC58 --------->At5g28300
   --------->At4g35610                       --------->DAG2   ----------->GT1                  -----
<---------At4g35610                         ---------->DOF2--------->MYB52(1)             ----------
--------->ZAT2                  <---------At4g35610        ----------->RAV1(1)           <---------WRKY12
--------->At4g35610      <---------YAB1 <---------YAB1  --------->ANAC58                 <---------WRKY38(1)
---->YAB1         <---------ALFIN1   <---------AHL20(2) --------->ANAC58       <-----------HVH21
 
atgagctgcagaaatagtcccccaagtcgtgattcagcatataatgaaaaagcaaagggaagcaacagtaattcttacaacctgttacacagtcaaagaa  10108100
                                          <---------MYB52(1)
                                          <-------GAMYB
                                         --------->LBD16
                                       <---------LBD16
                                     ------>ZmHOX2a(2)
                                    <---------GLK1(1)
                                    --------->GLK1(1)
                                    <------ZmHOX2a(2)
                                   <---------ARR14(3)
                                   <---------ARR14(2)
                                   <-----------ARR10
                                   --------->ARR14(3)                --------->ANAC58    -----------
                      ------->TEIL --------->ARR11(3)          <----------DOF2           --------->At4g35610
                    --------->ZAT14--------->ARR14(2)       <-----------GT1         <---------At4g35610
              >>>>>>>>>>>>>>>>>LFY <---------ARR11(3)    <---------ARR11(3)       <-----------RAV1(2)
------>GT1   --------->ZAT6    =============HOX2a_HOX2a  <---------AHL20(1)     <-----------HVH21---
>DOF2      <-----------GT1     ------>ZmHOX2a(1)   --------->ANAC46  --------->ANAC58  <------ZmHOX2a(1)
 
gtgaatcagataattaacaccaatgtactctctcctaagatctccggttgtcatactcaatatatacttttcaagcactgatgcttcagaggagctaaaa  10108200
                                                                                     <---------At4g35610
                                                                                     --------->At4g35610
                                                                                     <---------LBD16
                                                                     --------->YAB1---------->CDC5
                                                             <-------TEIL         <---------ZAT14
                           --------->ANAC58                 --------->ALFIN1      --------->ZAT14
>GT1<---------ZAT14        --------->ANAC58             --------->LBD16       <-----------GT1
------>YAB1     <---------YAB1                         <---------LBD16      <-----------GT1    <----
 
acataactacagcgaaattttgattttgacaaggaaacaagaacattgcagaacatttccagggtgcatcaaacacaattttcacttcagcgggattttt  10108300
                                                                                            <-------
                                                                                          <---------YAB1
                                                                                         xxxxxxxxxxx
                                                                                         xxxxxxxxxxx
                                                                                         xxxxxxxxxxx
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                                                                                     xxxxxxxxxxxxxxx
                                                                                     <---------ZAT6
                                                                                     xxxxxxxxxxxxxxx
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                                                                                 xxxxxxxxxxxxxxxxxxx
                                                                                 xxxxxxxxxxxxxxxxxxx
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                                                                                 xxxxxxxxxxxxxxxxxxx
                                                                                xxxxxxxxxxxxxxxxxxxx
                                                                              <------MYB46(1)   xxxx
                                                                            xxxxxxxxxxxxxxxxxxxxxxxx
                                                                            xxxxxxxxxxxxxxxxxxxxxxxx
                                                                            xxxxxxxxxxxxxxxxxxxxxxxx
                                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                                                                            xxxxxxxxxxxxxxxxxxxxxxxx
                                                                           xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                                                                           xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                                                                           xxxxxxxxxxxxxxxxxxxxxxxxx
                                                                           xxxxxxxxxxxxxxxxxxxxxxxxx
                                                                           xxxxxxxxxxxxxxxx>smallRNA(fl3)
                                                                           xxxxxxxxxxxxxxxxxxxxxxxxx
                                                                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                                                                           xxxxxxxxxxxxxxxxxxxxxxxxx
                                                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                                                                          xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                                                                          xxxxxxxxxxxxxxxxxx>smallRNA(si3)
                                                                          xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
                                                                          xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
                                                                          xxxxxxxxxxxxxxxxx>smallRNA(se3)
                                                                          xxxxxxxxxxxxxxxxxxxxxxxxxx
                                                                          xxxxxxxxxxxxxxxxxx>smallRNA(se3)
                                                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                                                                          xxxxxxxxxxxxxxxxxxxxxxxxxx
                                                                          xxxxxxxxxxxxxxxx>smallRNA(le3)
                                                                          xxxxxxxxxxxxxxxx>smallRNA(se3)
                                                                          xxxxxxxxxxxxxxxxxxxxxxxxxx
                                                                          xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
                                                                          xxxxxxxxxxxxxxx>smallRNA(le3)
                                                                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
                                                                          *TSS<------MYB83----------
                                                                          xxxxxxxxxxxxxxxxx>smallRNA(si3)
                                                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
                                                                          xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                                                                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                                                                          <----------DOF2xxxxxxxxxxx
                                                                          xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
                                                                          xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                                                                          xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)
                                                                          xxxxxxxxxxxxxxxxxxxxxxxxxx
                                                                          xxxxxxxxxxxxxxxx>smallRNA(s)
                                             <---------ANAC58             xxxxxxxxxxxxxxxxxxxxxxxxxx
                                     --------->ANAC58                    xxxxxxxxxxxxxxxxxx>smallRNA(se3)
                                     --------->ANAC46                    xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
                                     --------->ANAC58    <---------AHL20(2)xxxxxxxxxxxxxxxxxxxxxxxxx
                                    ------->GAMYB        --------->AHL20(2)xxxxxxxxxxxxxxxxxxxxxxxxx
           <----------DOF2    --------->ANAC46         <-----------TBP   xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
          <---------DAG2      --------->ANAC58     ------>ZmHOX2a(2)    <---------ZAT18xxxxxxxxxxxxx
       --------->ANAC46    <-------TEIL      <---------ANAC58  <-----------GT1xxxxxxxxxxxxxxxxxxxxxx
-------RAV1(1)  ---------->ID1--------->ANAC58  --------->ATHB12 --------->MYB46(3)xxxxxxxxxxxxxxxxx
 
gttggattcaacgccttttgtcccctaagatgcaaacaacacacaaatgcttgatcggatttatattaacaacagggcatttggtctagtggtatgattc  10108400
             xxxxxxxxxxxxxxx>smallRNA(le3)
             xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
             xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
           xxxxxxxxxxxxxxxxx>smallRNA(le3)
           xxxxxxxxxxxxxxx>smallRNA(le3)
           xxxxxxxxxxxxxxxx>smallRNA(le3)
           xxxxxxxxxxxxxxx>smallRNA(si3)
           xxxxxxxxxxxxxxxx>smallRNA(se3)
           xxxxxxxxxxxxxxxx>smallRNA(si3)
          xxxxxxxxxxxxxxxx>smallRNA(le3)
          xxxxxxxxxxxxxxx>smallRNA(le3)
          xxxxxxxxxxxxxxx>smallRNA(se3)
          xxxxxxxxxxxxxxxx>smallRNA(s)
          xxxxxxxxxxxxxxxx>smallRNA(si3)
         xxxxxxxxxxxxxxxxx>smallRNA(si3)
        <---------ANAC58
      --------->ALFIN1
      xxxxxxxxxxxxxxxxx>smallRNA(se3)
     xxxxxxxxxxxxxxxxxxx>smallRNA(s2)
    <---------ANAC58
    <---------ANAC58
   <---------MYB46(3)
  xxxxxxxxxxxxxxxx>smallRNA(s)
 xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
 xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)
 xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
xxxxxxxxxxxxxxxx>smallRNA(s)
<----------DOF2
--GLK1(2)xxxxxxxxxxxxxxxx>smallRNA(s)
xxxxx>smallRNA(fl3)
xxxxxx>smallRNA(fl3)
xxxxxx>smallRNA(se3)
xxxxxxx>smallRNA(se3)
xxxxx>smallRNA(se3)
xxxx>smallRNA(fl3)
xxxx>smallRNA(si3)
xxxxx>smallRNA(si3)
xxxx>smallRNA(se3)
xx>smallRNA(fl3)
xxxx>smallRNA(l2)
xxxx>smallRNA(fl3)
xxxx>smallRNA(se3)
xxx>smallRNA(se3)
xxxxxx>smallRNA(fl3)
xxxxxx>smallRNA(si3)
xxxxx>smallRNA(fl3)
xx>smallRNA(si3)
xxxx>smallRNA(se3)
x>smallRNA(le3)               <---------LBD16
xxxxxxxxxxxxxxxxxx>smallRNA(i2)xxxxxxxxxxxxxxxx>smallRNA(le3)
>smallRNA(se3)                xxxxxxxxxxxxxxxxx>smallRNA(le3)
xxx>smallRNA(se3)             --------->HSFB2a(2)
x>smallRNA(se3)               <---------HSFB2a(2)<----------DOF2
x>smallRNA(si3)              xxxxxxxxxxxxxxxx>smallRNA(i)
x>smallRNA(fl3)             xxxxxxxxxxxxxxxx>smallRNA(s)
>smallRNA(fl3)              xxxxxxxxxxxxxxxxxx>smallRNA(se3)
xx>smallRNA(si3)          xxxxxxxxxxxxxxxx>smallRNA(s)
x>smallRNA(se3)           <---------GLK1(2)  --------->WRKY12
x>smallRNA(le3)          xxxxxxxxxxxxxxxx>smallRNA(s)
x>smallRNA(fl3)          xxxxxxxxxxxxxxxxxxx>smallRNA(l2)
x>smallRNA(se3)       xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
->ARR10 <---------ANAC58xxxxxxxxxxxxxxxx>smallRNA(s)                                      --------->YAB1
xxxxx>smallRNA(s)   xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                  ------->GAMYB
>smallRNA(si3)      xxxxxxxxxxxxxxxx>smallRNA(fl3)                            <------------MYB.PH3(2)
>smallRNA(fl3)      xxxxxxxxxxxxxxxxxx>smallRNA(se3)                          <---------MYB55(2)
xx>smallRNA(fl3)   --------->LBD16       <------NtERF2                        <---------MYB111(2)
xx>smallRNA(se3)xxxxxxxxxxxxxxxxxx>smallRNA(se3) <---------DAG2               --------->MYB46(3)
xxxx>smallRNA(si3)--------->LBD16       ------>NtERF2                         <---------MYB52(2)<---
x>smallRNA(se3)--------->PCF5xxxxxxxxxxxxxxxxxx>smallRNA(si3)                 <---------MYB46(2)----
xxxx>smallRNA(l2)xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                    <---------MYB111(1)
 
tcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccccattgactttttgcaaaatgatgttctaaatgccaactaacatttcatcatatt  10108500
                                                                                                  <-
             <-----------GT1                                                                     ---
         <----------DOF2                                                                         <--
        <---------DAG2                                                                           ---
     <---------ALFIN1            <---------WRKY12                                               <---
  <-----------GT1           ---------->DOF2                                                     ----
------AHL20(2)            ----------->HVH21                      <---------GLK1(2)          <-------
----->AHL20(2)     ---------->DOF2                     --------->YAB1                      ---------
 
taaattatccaccttttaactattaagccctgaaagtcaactaatagaactatctaaaacataacttagattatctaaacaagagagcattctcatgtca  10108600
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                                                                                               xxxxx
                                                                                               <----
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                                                                                               *TSSx
                                                                                               xxxxx
            --------->AHL20(1)                                                                 xxxxx
    --------->YAB1                                                                             xxxxx
-----ZmHOX2a(2)                                                                                xxxxx
------>ARR14(2)                                                                   ------------>CBF <
-------ARR14(2)                                <---------TOE2(3)         <---------ANAC58      xxxxx
------>AGP1 <---------AHL20(1)                --------->YAB1             <---------ANAC58     xxxxxx
------At4g35610                        <-----------GT1               <------------CBF         xxxxxx
----->At4g35610 <-----------GT1    <---------DAG2               ----------->RAV1(1)           xxxxxx
----HVH21  --------->AHL20(2)      <----------DOF2     <---------GLK1(1) <---------ANAC46    <------
>TGA1a --------->AHL20(2)     <-------TEIL <------------CBF    --------->MYB46(3) <---------ATHB12 <
 
gatccaaatataaaatatataacagttggaacatacagctttttgccattgagaatagaattctcaacaacacattgcttgctaaatcaataacagggca  10108700
                      xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                      xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)
                      xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
                     <----------DOF2
                     xxxxxxxxxxxxxxxx>smallRNA(s)
             <---------GLK1(2)
           ----------->ARR10
          xxxxxxxxxxxxxxxx>smallRNA(fl3)
          xxxxxxxxxxxxxxxxxx>smallRNA(se3)
          xxxxxxxxxxxxxxxx>smallRNA(se3)
          xxxxxxxxxxxxxxxxx>smallRNA(se3)
          xxxxxxxxxxxxxxxx>smallRNA(s)
         xxxxxxxxxxxxxxxx>smallRNA(fl3)
         xxxxxxxxxxxxxxxx>smallRNA(si3)
        xxxxxxxxxxxxxxxxxx>smallRNA(si3)
        xxxxxxxxxxxxxxxxx>smallRNA(se3)
       xxxxxxxxxxxxxxxx>smallRNA(fl3)
      xxxxxxxxxxxxxxxxxxx>smallRNA(l2)
      <---------ZAT6 xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
      xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
      xxxxxxxxxxxxxxxxxx>smallRNA(se3)
      xxxxxxxxxxxxxxxxxxx>smallRNA(se3)
    xxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)
   xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
  xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
  xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
  xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
 xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
xxxxxxxxxxxxxxxx>smallRNA(si3)
xxxxxxxxxxxxxxxxx>smallRNA(si3)
xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
xxxxxxxxxxxxxxxxxx>smallRNA(fl3)
xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
xxxxxxxxxxxx>smallRNA(fl3)
xxxxxxxxxxx>smallRNA(se3)       xxxxxxxxxxxxxxxx>smallRNA(si3)
xxxxxxxxxxxxxxx>smallRNA(se3)   xxxxxxxxxxxxxxx>smallRNA(si3)
------DOF2xxxxxxxxxxxxxxxxx>smallRNA(fl3)
xxxxxxxxxxxxx>smallRNA(se3)     xxxxxxxxxxxxxxxx>smallRNA(le3)
xxxxxxxxxxxxxxxxxxx>smallRNA(se3)
xxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxxx>smallRNA(le3)
xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
xxxxxxxxxxxxxxxx>smallRNA(i2)  xxxxxxxxxxxxxxx>smallRNA(le3)
xxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxx>smallRNA(s)
xxxxxxxxxxxxxx>smallRNA(fl3)   xxxxxxxxxxxxxxxx>smallRNA(s)
xxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxx>smallRNA(le3)
xxxxxxxxxx>smallRNA(le3)<---------MYB46(3)
xxxxxxxxxxx>smallRNA(le3)<---------ANAC58
xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      --------->LBD16
xxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxx>smallRNA(se3)
xxxxxxxxxxxxx>smallRNA(si3)    xxxxxxxxxxxxxxxx>smallRNA(si3)
xxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxx>smallRNA(se3)
xxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxx>smallRNA(le3)
xxxxxxxxxxxx>smallRNA(si3) --------->ALFIN1 <---------------------WRI1
xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxx>smallRNA(se3)
xxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxx>smallRNA(si3)
xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->PCF5  --------->ANAC58
xxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxx>smallRNA(s)
xxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxx>smallRNA(se3)
------MYB46(1)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)--------->ANAC58
xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxx>smallRNA(le3)
xxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxxxxx>smallRNA(s2)           <----------DOF2
xxxxxxxxxxxxxx>smallRNA(se3) <---------ANAC58       --------->ANAC46 <---------DAG2              ---
xxxxxxxxxxxxxx>smallRNA(fl3) <---------ANAC58  <---------GLK1(2) --------->WRKY12                ---
---ZAT18xxxxxxxxxxxxxxxxx>smallRNA(si3)--------->LBD16         <----------DOF2                 <----
------MYB83<---------YAB1<---------ANAC58xxxxxxxxxxxxxxxx>smallRNA(fl3)           --------->At4g35610
 
tttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcgcaatgcccctttgactttttgtcaaacatctgaaaattgctc  10108800
                                  <-----------ARR10
                                  <---------ARR11(1)
                                  <---------ARR14(2)
                                  <---------ARR11(3)
          --------->ATHB12        --------->ARR11(3)
       <---------ICU4             --------->ARR14(2)
     <---------YAB1              <---------CCA1(2)
------>ANAC55(2)             <-----------GT1                --------->ANAC58
-------->GT1             --------->KAN4(1)                  --------->ANAC58              --------->AHL20(2)
-------RAV1(2)         <---------GLK1(2)     --------->MYB46(3)                          --------->AHL20(2)
 
aggtaactaatattgatttagttatagattattcacatatcttcttcaacaactatggaccacaagtcccccttccatttcagcaagagaaaataaaaaa  10108900
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AGI:  At1g28980.1   
Description:  pre-tRNA. tRNA-Pro (anticodon: TGG)
Range:  from: 10108375    to: 10108446    Orientation: Forward
Links:  TAIR  MIPS 
 
AGI:  At1g28990.1   
Description:  pre-tRNA. tRNA-Pro (anticodon: TGG)
Range:  from: 10108696    to: 10108767    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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