Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                    -                                                                                                    -                                                                             <---------ARR11(3)     <                                                                   <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                 --------->KAN4(2)                  <                                                                --------->HSFB2a(1)                <-                                                                <----------TaMYB80           <------NtERF2                                                                <---------HSFB2a(1)         <--------                                                                --------->KAN4(1)           <--------                                                                <---------KAN4(1)           ------>NtERF2                                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<                                                               <---------ARR14(2)          --------->ATERF1(2)                                                               <---------KAN4(2)           <---------ATERF1(2)                      <---------ARR14(2)                       --------->ARR14(2)          <---------bZIP60(1)                      --------->ARR14(2)              <------ZmHOX2a(1)      --------->ARR11(3)  <---                <---------MYB52(1)                   <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------->bZIP60(1)               <-------GAMYB    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    ---------->DOF2   --------->RAP2.6(2)      --------->ARR14(2)      <---------ANAC46 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     ------>NtERF2      <---------ARR14(2)    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)---------->TaMYB80   <xxxxxxxxxxxxxxxx -------->TOE1(2)  <---------ANAC46 <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   gacatgggaatacactcggttgtgtattcgttgagggaatcgcctcgcttattgcaggactagagaatattccatcaaagttctcaatctctgccgtcat  10063000           <---------HSFC1(2)           --------->HSFB2a(1)      <---------HSFB2a(2)      --------->HSFB2a(2)      <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  ==========================HOX2a_HOX2a  ------>ZmHOX2a(2) <------ZmHOX2a(2)                                  <<<<<<<<<MYB98 ===========================HOX2a_HOX2a           <---------YAB1 -------->ARR14(2)                        <---------AHL20(2) -------->ARR11(3)                       --------->AHL20(1) -------->ARR14(3)                       --------->AHL20(2) ---------ARR11(3)    <xxxxxxxxxxxxxxxxxxxsmallRNA(si3) ---------ARR14(2)  <---------YAB1       <---------AHL20(1) -----ZmHOX2a(1) <---------MYB52(1)----------->RAV1(1)--------->AHL20(2) -RAP2.6(3)<---------HSFB2a(1)--------->DAG2      ----------->GT1 --------->YAB1 ---HVH21  --------->HSFC1(2)---------->DOF2    xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ---------ARR14(3)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------AHL20(2)   --------->DAG2 ------TOE1(2)  <----------DOF2  xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       ---------->DOF2 xxxxxxxsmallRNA(si3)<------ZmHOX2a(1)   <---------AHL20(2)       --------->AHL20(2)  <-----------GT1   aggatcttgtagaagctcctttaggattgcataaagccaacaatttaatattatgttaaattagataataaaaaaaaaaagtatgtgtttacaatttgta  10063100                                  <---------MYB46(3)                                  ----------->GT1                                <-------GAMYB                             <-------TEIL                                                     -------                          --------->At4g35610                  <---------AHL20(2)            --------               ---------->DOF2  <---------At4g35610 ---------->DOF2                          <-------   caaagtttttgaaaaaaaaaagcttatgagatgcagttgttaaaaacccatgaagaaagctctgtttaatctgtctctcttgtttgaaactaaaattaaa  10063200                                                                --------->AHL20(1)         <---------ARR14(2)                            <---------AHL20(2)         --------->ARR14(2)                          <---------AHL20(2)         <---------ARR11(3)                         --------->AHL20(1)         <---------ARR11(1)                         <---------AHL20(1)        <---------CCA1(2)                          <---------AHL20(2)                          <-----      --------->YAB1                             --------->AHL20(2)               <---------AHL20(2)     <---------ATHB12       <---------ARR11(3)  <---------AHL20(1)   --------->TOE2(3)         ------ --->DOF2--------->ARR11(3) --------->ARR11(3)  --------->AHL20(1)  ----------->GT1     ----------->GT1 ->AHL20(2)               <---------TOE2(3)    --------->AHL20(2)  <---------TOE2(3)  ---------->DOF2 --AHL20(2)       ------>ZmHOX2a(2)        --------->AHL20(2)  --------->YAB1     --------->AHL20(2)   gacccctatcatatcttcgatctccactaagatttatcgtcgatataaaatatatatatttttaaaaataatgttaaactagatttaaaaaagaaaatta  10063300                                                   <---------ICU4                                        --------->AHL20(2)                                        <---------AHL20(1)                                        <---------AHL20(2)                                      -----                                     --------->AHL20(2)     <---------ICU4                   <xxxxxxx                                     --------->AHL20(1)     -------->ATHB1                   --------                                     <---------AHL20(1)     --------->ATHB12               --------->PCF2                                    <---------AHL20(2)      --------->ATHB51               --------->ARR14(2)                              ----------->GT1  ---------->DOF2                             <---------ARR14(2)                            ----------->GT1  <---------AHL20(2)     xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                           --------->DAG2<---------AHL20(2)<---------YAB1              <---------ANAC46                          ---------->DOF2--------->AHL20(2)--------->ICU4             --------->ALFIN1 ----AHL20(2)        <---------AtLEC2<---------AHL20(2) <---------YAB1              <---------ANAC46 --->AHL20(2)      <-----------GT1  --------->AHL20(2)<-----------GT1            ----------->HVH21   tatgtgtttatatgaaagtttttacatgaaaagtgaaaataaattatttaaaagaattaccattattgaaggaaatggttctggtgatggggggaaccac  10063400                                        <---------ANAC58                                        <---------ANAC58                                   <---------ICU4                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                              <------ZmHOX2a(2)                             --------->AGP1                             --------->ARR11(3)                             <---------ARR14(2)                  --------->YAB1                             --------->ARR14(2)             ------------>CBF                            --------->GLK1(1)          --------->ATHB12                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------WOX13(1)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     --------->TOE2(3)  ----------->GT1  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<------------CBF <------ZmHOX2a(1) --------->YAB1 <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ====================================HOX2a_HOX2a --------->TOE1(3)                                  - ---->ANAC46     <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)  ---------->DOF2                         --------- xxxxxxxxxxxxxxxsmallRNA(si3)<---------ARR11(3) ----------->RAV1(2)                       <---------- ->MYB46(3) ----------->RAV1(1)<-------TEIL   *TSS----------->HVH21                  --------->YAB1--   gaaggagtaaatggcaacatatcatcaacgagatccatcttgacttgtttacctgaaagattgacaataagaatatatgtgagataatcagaaattgata  10063500                                                                                           --------->YAB1                                                                                          <---------YAB1      <---------------AtSPL3       <---------YAB1                                        <---------ARR11(3) --------->AHL20(2)       --------->YAB1                                                 --------->ARR11(3) -------->YAB1  <----------DOF2 --------->ICU4                                <---------ARR11(3) -->GT1   ------->TEIL --------->WOX13(1)                                     --------->ARR11(3) --CBF<---------------AtSPL8    <---------ATHB51             --------->YAB1  <---------CCA1(2)    <-- ------->AHL20(2)    ------------>CBF        --------->AHL20(2)   <---------YAB1        --------->YAB1   aataaaaatatgtacggacttttgacaatcagaaattattctttcgataaattttgtatactaacatcatgctacttatatatctttcaaatatcatatg  10063600                                                          ------>MYB46(1)                                                          ------>MYB83                             --                                 <---------ICU4          ----------->RAV1(1)                <--------                  --------->WOX13(1)                    ------->GAMYB                     --------->YAB1            ----------->GT1     --------->ICU4         --------->MYB46(3)                 <---------ICU4         <---------ANAC46 ----------->GT1    <----------DOF2                             --------->ICU4 -------ANAC46   <---------AHL20(2) <-----------GT1  <-----------GT1                     <---------ATHB12   gagtatgaattgaggggaataaatcaaacagataaaaattactctatcttttgtttaaccaacaaaaaaaaaactctatcttctaaatgaaatcatgaca  10063700                                     <---------AHL20(2)   --------->AHL20(1)                     <---------TOE2(3)             --------->YAB1                   <---------AHL20(2)--------->AHL20(1)   <---------AHL20(1)            ------->TEIL<---------YAB1           --------->AHL20(2)          --------->LBD16         <---------AHL20(2) <---------AHL20(2)          <------NtERF2<---------AHL20(1)        <---------AHL20(2)      ------>ZmHOX2a(1)         --------->ANAC46         --------->AHL20(2) --------->AHL20(2)<---------ANAC46 <-----------GT1   --------->AHL20(2)--------->AHL20(2)   --------->ARR11(3) ------->AHL20(2) --------->AHL20(2) <---------AHL20(1)  <---------AHL20(2) -YAB1  <---------LBD16--------->AHL20(1)    --------->CCA1(2)<---------YAB1                     ----   atttaacttgtccgcatctaattaatatttttggattaaaatattagatataaaaataaatattttgtttgtgtcctgaaatattagtataagtatatat  10063800                                         --------->At4g35610                                         --------->ZAT2                                         <---------ZAT2                                 --------->ATHB12                              --------->TOE2(3)                            ------>MYB46(1)                            ------>MYB83 <---------At4g35610                         <---------HSFB2a(1)                         <----------DOF2  --------->AHL20(1)     <---------HSFC1(2)              <---------ANAC58                     <------  --------->AHL20(2)     --------->HSFC1(2)              <---------ANAC58                     -------  <---------AHL20(1)     --------->HSFB2a(1)             <---------ANAC46            ---------->DOF2  <---------AHL20(2)     --------->MYB46(3) ----------->GT1          <---------DAG2 <------ZmHOX2a(1) <---------AHL20(2)   xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->STY1(2)       ------>ZmHOX2a(1)   < --------->AHL20(2)--------->ANAC58   <------ZmHOX2a(1) <---------STY1(2)      --------->TOE2(3) <--- ----->AHL20(2)    --------->ANAC58   xxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <----------DOF2----------->GT1   aaaataaatttcacatataacaagcgaaccatccttgataggaagctggttaaatactagcttgtggctcacttttcttttccttaggaaagggcaaatt  10063900  Previous    Next  AGI:  At1g28630.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G77960.1) Range:  from: 10060825    to: 10063446    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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