Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100            --------->ANAC58          --------->ANAC58          --------->ANAC46        <---------ALFIN1        ----------->RAV1(1)                                                                    ------     <---------ZAT18                 <---------MYB52(2)                                        ------     --------->PCF2             --------->ANAC46                                               ------ ------->GLK1(2)           <-------TEIL                                             --------->O2    < ------>DAG2  --------->ANAC58  --------->ANAC58                                    <---------O2    - ------>DOF2  --------->ANAC58  --------->ANAC58               <---------GLK1(2)   <-----------------   aaagctgtgcccacacaagaaaacagaggttcaaacgcaactatcagtttttttttgtgtttttggattcttctcagagattgaagacgtctaaaacact  10055300                       --------->ATHB12                      <---------YAB1                      --------->ICU4                  <---------ARR11(3) --->ANAC58 --------->YAB1 --->ANAC58<---------ATHB12                                                                         - --->ANAC46<---------ATHB51                         ------>ZmHOX2a(1)              ---------->DOF2 -- ---------At4g35610 --------->YAB1          <-----------GT1                  <-------TEIL    -------- ---------->RAV1(2)<------ZmHOX2a(2)     --------->ARR14(2)              ----------->GT1 <----------- ------TaNAC69(2) --------->ARR11(3) <---------At4g35610             <-----------HVH21   <-----------   ccaactgagaccaattataagatcatgattcgatacttcatcagatttacattcctagtcacttacttacatgtcaagttacatagaaagagaagtaccg  10055400                                           <---------MYB46(3)                                           <------MYB46(1)                                           <------MYB83                                          <---------AtMYB61                                          <---------DEAR3(1)                                          --------->ALFIN1                                        <---------ANAC46                                        <------MYB46(1)                                        <---------ANAC58                                        <---------ANAC58                                        <------MYB83                   --------->ARR14(2)                                       --------->MYB55(2)              <---------ARR14(2)                                       <---------MYB46(3)        --------->ANAC58                                    <-------GAMYB                --------->ANAC46                   =                            --------->ARR14(2)                   --------->ANAC58                   -                    --------->At4g35610--------->MYB111(2)      --------->SPL7                     ==                    <-------GAMYB   <---------ZAT2              --------->RAP2.6(3)         <-------GAMYB          <---------YAB1    <---------ARR14(2)                <---------SPL7   ----------->HVH21   <-        --------->YAB1     <------ZmHOX2a(1)               <---------------AGL15     ================ -------->DAG2     <---------MYB46(3)<---------MYB52(1)    --------------->AGL15     <------ZmHOX2a(1) -------->DOF2 <---------RAP2.6(2)  --------->ZAT2        <-----------------AGL1     ================ ->MYB52(1)   --------->SPL7--------->MYB52(1)            <-----------GT1     --------->At5g28300 <-- ----AtSPL3  --------->CCA1(2)    <-----------RAV1(2)<---------HSFB2a(1)      <-----------HVH21   --- ----AtSPL8 --------->ARR11(1)--------->MYB46(3)     --------->HSFB2a(1)---------->DOF2    <---------MYB46(3)   ataaagtcgatgatgatacggccgttgcaggaacggccagttgggtggtggaagaaggtttctccatacggcagaaacgcggtcacaggaagatggttac  10055500             ------->GAMYB            <---------ATHB12            --------->MYB46(3)           ------>MYB46(1)           -------->P                                                       <---------ANAC58           ------>MYB83                                                     <---------ANAC46         --------->MYB46(3)--------->ETT(1)                                 <---------ANAC58         --------->AtMYB61 <---------At1g77200                         <---------ALFIN1  --------->LBD16       --------->ALFIN1                             --------->LBD16 ============================HOX2a_HOX2a                             ------>NtERF2 ----->ZmHOX2a(2)     ------>ZmHOX2a(1)                             --------->ANAC46            <---- ============================HOX2a_HOX2a                           --------->RAP2.6(3)    <---------YAB1 -----ZmHOX2a(2)    ----------------->AGL1                         <---------LBD16   <---------At4g35610 ======HOX2a_HOX2a  <---------ANAC58                             --------->GLK1(2)   <---------ZAT2 =====HOX2a_HOX2a   <-----------------AGL1       --------->YAB1  <---------ARR14(2)  --------->At4g35610 -------ARR14(2)    <---------ANAC46      --------->ANAC46       --------->ARR14(2)  --------->ZAT2 ------>ARR14(2)    <---------ANAC58  --------->MYB46(3)        <---------GLK1(2)  <---------ZAT18   gatccgagagaccaaccaagtttcctgtgtcggtaatcgaatcaccgaaactgataatcgactcgagattccggcactgcgtttgtgagctcacgattgt  10055600                                              <---------SPL7                                           ------>NtERF2                                          <---------TGA2(1)                                          --------->bZIP60(1)       --------->ICU4                                          --------->ANAC58         *TSS                                          --------->ANAC58    --------->At5g28300                                          --------->ANAC46  <---------DEAR3(1)                                 --------->ARR14(2)        <---------LBD16                                 <---------ARR14(2)        --------->At4g35610         ----------->GT1         --------->GLK1(2)         <---------At4g35610        <--------P     --------->ZAT18 ----------->HVH21   --------->LBD16      ----------->GT1  <---------ZAT18 ----------->TGA1  <---------LBD16     <---------------AtSPL8      <-----------ARR10       --------->ZAT18              --------->HSFB2a(2)   --------->DAG2    --------->At4g35610  --------->TGA2(1)<------NtERF2           <----------DOF2  <  ---------->DOF2    <---------At4g35610  <---------bZIP60(1)----------->GT1<----------DOF2       <-- ------ID1     ---------->DOF2  <---------GLK1(2) <---------HSFB2a(2)   <-----------GT1    ----------   gacaaaaagggtagataaaaagaagctcactagagaatctagtgacgccatacgagaagtccgcggtgaaatttttatctttcggcttttagaatgttat  10055700                                                                                              <------                                                                                              -------                                                                               <-----------RAV1(1)                                                                            <-----------RAV1(1)                                                                        --------->ARR11(3)    -------                             <---------ANAC46                          --------->YAB1        <-------            --------->ARR11(3)      ----------->RAV1(1)                <--------ATHB1        <-------    <-----------GT1    <---------MYB52(1)                             <---------ATHB12   --------->AHL20(2) <---------YAB1      <---------ANAC46           <------ZmHOX2a(1)     --------->ICU4     <---------YAB1 ---------AHL20(2)   <---------ANAC58       ---------->DOF2       ------------>CBF   --------------->AGL15 -------AHL20(2)     <---------ANAC58   ---------->DOF2    <---------ARR14(2)  <---------REM1(1) ->GT1      <---------ARR11(3)     <----------ID1          --------->ARR14(2)  <---------MYB46(3)  --   attattttacaaaacatcttgtttcgttttttcgtaaacaacaaaagaaaggactggtgagtatatgtctcaatgattttgttgttgccttataaataat  10055800                                                                     --------->ZAT18                                                                     <---------ZAT18                                                                  <------MYB46(1)             <------                                                                  <------MYB83                -------                                                                 <---------DEAR3(1)           -------       --------->ZAT6                                            <---------MYB46(3)      -------->P  <---------PCF2                                                 --------->MYB111(1)     ------>MYB83 ----------->TCP11(1)                                            --------->MYB59         ------>MYB46(1) ---ICU4                                                         --------->MYB46(2)    ------->GAMYB -->YAB1                                                         <---------AtMYB61    <---------MYB52(2) -->MYB52(1)                                                     --------->MYB111(2)  --------->MYB46(3) --AHL20(2)                                                      --------->MYB55(2)   <---------MYB55(2) --ATHB51                     ----------->GT1                   <--------P  --------------------->WRI1 ------->ALFIN1   <----------DOF2                               <---------MYB55(1)  <-----------GT1   ggtgggccaagactacaaaactttttatggactagaaaattttgtatttgtatcgttttaagatgggtaggtggacttctaagttctaaccaacctctag  10055900                                                                     --------->ANAC55(2)          <---------GLK1(2)                                          <---------ANAC55(2)        <----  --------->ARR11(3)                                                 <---------ANAC46           <----  <---------ARR11(3)                  ----------->GT1               <---------LBD16 --------->ATHB12 --------->RVE1(1)               <---------ZAT6              <---------STY1(2)     --------->ICU4   < --------->CCA1(1)            --------->ATHB12               --------->STY1(2)   --------->YAB1 <---- ---HSFB2a(2)                <---------YAB1             <-----------GT1        -------->P <---------YAB1 -->HSFC1(1)               --------->YAB1            --------->MYB52(2) <---------GLK1(2) <---------- -->HSFB2a(2)            <---------YAB1         <---------TOE1(2)  <-----------GT1 <---------YAB1   <   aaaatatctacagattattttcatgttattcatgagtgataagttatttgcaggttatttacgagctagttacggattatctaccatgatttatacttgc  10056000                                                                               <-----------GT1       --------->ANAC46                            <---------AHL20(2)       <---------ICU4  --------->PCF2                                   --------->AHL20(2)      <---------AHL20(2) -----ANAC58                            --------->AHL20(1)                 --------->AHL20(1) -----ANAC46   --------->YAB1           <---------AHL20(1)            --------->AHL20(2) ---------ANAC58                   --------->AHL20(2)  <---------AHL20(2)  --------->AHL20(2) -----ANAC58  <---------ATHB12     <---------AHL20(2)<---------YAB1  --------->AHL20(2) -GT1<---------ALFIN1             --------->YAB1--------->TOE2(3)--------->AHL20(2)  --------->TOE2(3) ---------ANAC58   --------->GLK1(2)    <---------AHL20(2)  --------->YAB1--------->AHL20(2)---------   ttgggttccactgcaaatcataatctagtatggctattttaatatatcaacatttatttttatcaaaaaaaataaaaaaaattacattcttagagagaaa  10056100                            <---------ICU4                         --------->YAB1                                        <---------ANAC46 -----                        --------->AHL20(2)  <-----------GT1        --------->ANAC58  <---------AHL20(2)             <---------YAB1--------->ICU4<---------ARR11(3)        --------->ANAC58 <---------AHL20(2) -->GT1     --------->AHL20(2)           --------->ARR11(3)        --------->ANAC46 --------->AHL20(2)   attattcagaaaatttttataaacaaataaaaattagtttaaagatttactcccataaacttgttgtacaagcaagagattgtgtattaatttgaaaaca  10056200  Previous    Next  AGI:  At1g28610.1    Description:  GDSL-motif lipase, putative. similar to lipase, putative [Arabidopsis thaliana] (TAIR:AT1G28600.1); similar to lipase, putative [Arabidopsis thaliana] (TAIR:AT1G28600.2); similar to lipase 1 [Brassica napus] (GB:AAX59709.1); contains InterPro domain Lipase, GDSL; (InterPro:IPR001087) Range:  from: 10053603    to: 10055667    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g28620.1    Description:  pseudogene, lipase, similar to lipase Arab-1 GB:S68410 GI:2129636 (Arabidopsis thaliana); blastp match of 44% identity and 1.2e-48 P-value to GP|7523500|dbj|BAA94228.1||AP001633 unnamed protein product {Oryza sativa (japonica cultivar-group)} Range:  from: 10056179    to: 10057805    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version