Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                     <---------PCF2                                                                   --------->TCP16(1)                                                                   --------->PCF5                        <----------DOF2                         <---------AtMYB61                      --------->At4g35610                       --------->ALFIN1                   <------ZmHOX2a(2)                           --------->REM1(2)                  <---------ARR14(2)                          --------->ALFIN1                  <---------ARR11(3)                          <---------MYB52(1)                  --------->ARR11(3)                        <---------ANAC46             <---------ANAC46                               <---------ANAC58           <---------CCA1(2)          ----------->TGA1<-----------RAV1(1)--------->YAB1 <---------ANAC58    <---------MYB52(1)          ----------->HVH21            --------->YAB1   <---------ANAC58       ======================  <---------ANAC46--------->ARR14(2)------->GAMYB       <---------RAP2.6(2)    <----------DOF2      - ------At4g35610----------->ARR10  --------->MYB46(3)   <---------ANAC58  <---------At4g35610       <   gatggctcgaaggtgacgaagatcagctttgttgccaacgagcatgatcacaatgtttgcgtccgtgtggtccctaagctcctttagccatctctcaaca  10037300                      --------->ANAC58                      --------->ANAC58                      <---------bZIP60(1)                      --------->TGA1a                      <---------TGA2(1)                      <---------TGA1a                      --------->ANAC55(1)                      --------->bZIP60(2)                      --------->ANAC55(2)                      <---------ANAC55(2)                      --------->ANAC46                      --------->bZIP60(1)                     <-----------STF1                  <-----------HVH21                 <------NtERF2                 --------->bZIP60(2)                 --------->ANAC58                 --------->ANAC58                ------>NtERF2               <---------ANAC46               <---------ANAC58               <---------ANAC58              <------NtERF2            ----------->HVH21            --------->ALFIN1           <-------MYC3           <-------MYC2           ------->PIF5           ------->MYC3           ------->MYC2           <-------PIF5          <---------ANAC58          <---------ANAC46          --------->ANAC55(2)                   --------->At4g35610          ======================bZIP_bZIP       <---------At4g35610          <---------ANAC55(2)                 --------->MYB46(3)          <---------bZIP60(2)                ------>MYB46(1)                                        <          --------->O2<---------O2           ------>MYB83                                           -          --------->TGA1a                   --------->MYB52(1)                           --------->AHL20(2)          <---------TGA1a                   ----------->RAV1(1)                       ------>MYB83  -          <---------ANAC58       --------->ANAC58                                     ------>MYB46(1)          <---------O2--------->O2         --------->MYB46(3)                       <---------MYB111(1)        <-------------DYT1       --------->ANAC58                                   <---------MYB46(2)      <-----------HVH21<-----------TGA1    --------->AtMYB61                        <---------MYB59-- ===================bZIP_DOF     --------->ANAC46                                  --------->ANAC55(2) -------->HSFB2a(2) <---------ALFIN1     ------->TEIL------>ZmHOX2a(1)----------->HVH21  <---------AHL20(2) ---------HSFB2a(2)----------->HVH21   <---------ZAT18  --------->At5g28300   --------------->AtSPL8<   ttctcgaatgtcacgtggcgcgtcacgtcataaacaagcaatgcaccaacagctcctcggtaataagcgctcgtgatggctcggtacctaattttttaaa  10037400                                                                           <------NtERF2                                                                         <---------DEAR3(1)                                                                        <------NtERF2                                                                       <---------ATERF1(1)                                                                       <---------DEAR4(2)                                                                       ------>NtERF2                                                                       <---------ORA47(2)                                                                      <---------RAP2.6(2)                                                                      <---------ATERF1(2)                                                                      <---------DEAR3(1)              --------->ANAC58                                       --------->ATERF1(1)              --------->AtLEC2                                       <---------LBD16              --------->ANAC58                                  <---------ANAC58           --------->ICU4                                       <---------ANAC58      <------MYB46(1)                                        <----------DOF2      <------MYB83             <----------DOF2              <---------DAG2<---------DEAR3(2)        <     --------->MYB59        <-----------GT1               ------->TEIL--------->ATERF1(2)          -- ---------AHL20(2)    --------->DOF5.7(2)             <---------------AtSPL8                       <- -------->AHL20(2)   --------->TOE2(3)                --------------->AtSPL3                       <- -------->AHL20(1)   --------->TOE1(3)                --------------->AtSPL8 <---------ARR14(2)    -- ------->AHL20(2)    ----------->GT1               <---------ZAT6    <---------ORA47(1)       ------- ---------AHL20(1)  ----------->GT1   ----------->GT1 <---------------AtSPL3 --------->ARR14(2)    <-   attttatttggtcatcatgcaaacgttaaataacttttgagagtaattttagagtgtaagtacctttcttggccggcggtatcccatatttgagccttga  10037500                                                            <---------TGA1a                                                            <---------ANAC58                                                            <---------ANAC58                                                            <---------ANAC46                                                            --------->O2                                                      ------->MYC2                                                      <-------MYC2                                                      <-------PIF5                                                      <-------MYC4                                                      ------->PIF5                                                      ------->MYC4                                                      <-------MYC3                                                      ------->MYC3                                                      <-------PIF4                                                      ------->PIF4                                                     --------->ANAC55(2)                                                     --------->TGA1a                                 <---------ARR14(2)  --------->ANAC58                                 --------->ARR14(2)  --------->ANAC46                              <---------ANAC46       <---------TGA1a      --------->YAB1          <---------ANAC58       <---------O2     <---------YAB1           <---------ANAC58       --------->ANAC58 ------>ZmHOX2a(2)         --------->ALFIN1    =======================MYC_MYB ------ZmHOX2a(2)      <---------ANAC58        ================MYC_MYB ------->ARR11(3)      <---------ANAC58        <-------GAMYB<---------O2 ----------ARR10       <---------ANAC46       <---------MYB46(3)               ----------->GT1 --------ARR11(3)  --------->HSFC1(2)         --------->MYB55(2)        <---------ICU4 ------->ARR14(2)  --------->HSFB2a(1)       <---------AtMYB61         --------->ICU4 ---->HVH21        <---------HSFC1(2)       <---------MYB52(1)         <---------ATHB12 --------ARR14(2)  <---------HSFB2a(1)  ------>NtERF2--------->O2<---------ANAC46   cgatcttatcatcgcattggatgcttcgtgtggcgaattcgacaccgatggttgcacgtgagtcgtggctgaaatcatttctggtgaaacgagataacaa  10037600                   <---------HSFB2a(1)                   <---------HSFC1(2)                   --------->HSFB2a(1)                  --------->ARR14(2)                  ---------->TaMYB80                 --------->ARR14(2)                 <---------GLK1(2)                 <---------ARR14(2)                <------NtERF2               --------->LBD16              --------->RAP2.6(2)              --------->LBD16             <---------LBD16             <------NtERF2            ------>NtERF2           --------->ANAC46           <---------DEAR3(1)           --------->DEAR3(1)          --------->SPL7         <---------ALFIN1         <---------ATERF1(1)                         <---------ICU4         ------>NtERF2                              <---------YAB1        ----------->HVH21                         <---------ICU4        --------->ANAC46                          --------->YAB1       --------->HSFB2a(2)                       --------->ICU4                                     <       <---------HSFB2a(2)       <---------ALFIN1<---------YAB1                                    --   --------->GLK1(1)    --------->LBD16          <---------ATHB12                               <----   <---------GLK1(1)  <---------LBD16       ----------->GT1  <---------At4g35610          --------->LBD16   attagatttcccgacgccggaatctccggttaagaccaccttgaagaggtaatcataatcgtcttctgctctatatgctcccatcttatttccgaaataa  10037700                                       --------->DAG2                                -------->HAHB4                                <---------ICU4                                --------->YAB1        <----------DOF2        --------->ICU4                              --------->YAB1           <       --------------->AGL15   <---------ATHB12                       ------------>CBF       <-------      ----------------->AGL1   <---------ATHB51               --------->TOE1(2)           <---------ANAC58 ----------DOF2              --------->YAB1                <---------ARR11(3)  --------->GLK1(1)   <- ------->TOE2(3)     --------->YAB1   ---------->DOF2      --------->ARR11(3)  <---------GLK1(1) <--- -------GT1         <---------YAB1<---------YAB1  <---------MYB46(3)----------->HVH21     <---------ANAC58   acctttttgcctttatgagacgattataaactaataatgaaaaagtatttggctgttccaagaacttgggatgacaatgagaaatcccaaatgcgtttta  10037800     <---------AHL20(2)                                     <------------CBF <---------AHL20(2)                              <---------TOE1(3) ---------YAB1                                   <---------TOE2(3) ---DOF2        <---------HSFB2a(2)             <-----------GT1 --------AHL20(2)  ---------->DOF2             <-----------GT1 ------YAB1     --------->HSFB2a(2) <------------------------ANAC81      ------------>CBF  <---------   tttttattttttttggttctaaaaagtttagttttattttctcttgtttttaacgttttctaaattggagaagacaccaatttgagttttgaatattgag  10037900                                       <----------DOF2                                  ------>ZmHOX2a(1)                             <---------HSFB2a(1)                             --------->HSFB2a(1)                           <---------GLK1(2)                        --------->ANAC58                        --------->ANAC46                      <---------ICU4 <---------At5g28300 ---CBF                 --------->ANAC58                --------->YAB1      <-----------GT1        <-   aagacagcgagagaaaacagaaattcaaggaatctcctctacttttgaatttggctaaacataaacatttctaattttctaccgcttcaaaacgaagaga  10038000                                                   --------->GLK1(2)                                                   --------->ARR11(3)                                       <---------ICU4                                         -------                                      <---------YAB1                                <-----------GT1            <---------------AGL15     --------->ICU4                        ----------->RAV1(1)    --           ----------------->AGL2--------->bZIP60(1)     --------->AHL20(2)<----------ID1     -------   <<<<<<<<<<<<<<<<<LFY          <---------bZIP60(1)  <----------DOF2 <---------ATHB12   --------->ANAC58 ---------DOF2               <-----------HVH21     <---------ARR11(3) <---------ATHB51   --------->ANAC58   gcttttgacaatggctaaattcagaaatagttgtcatgtcatcatttcaagaaaatcttttatatatatccaattatgcaacaaatttaccaagacaaga  10038100                                                              ----------->RAV1(1)        ------->TEIL                                                             <----------ID1   <----------DOF2                                                     <---------AHL20(1)      <---------ICU4                                                     --------->AHL20(1)     <---------YAB1                                                     --------->AHL20(2)  <------ZmHOX2a(2)  <---------ICU4                                     <---------ARR11(3) <---------ARR11(3) -->ANAC58                                    <---------CCA1(2)         --------->ARR11(3)--------->ANAC46 ------->YAB1                                 ------>ZmHOX2a(1)  ---------->DOF2      --------->AtLEC2 -->ANAC58                                    ==================================HOX2a_HOX2a       <<<   ctcatcatgtcttcttcttgcaatgccaactatttcttcgtattcttcctatctatatattatgcaacaaagaagatcatctttactcatgcacataatc  10038200  Previous    Next  AGI:  At1g28550.1    Description:  AtRABA1i (Arabidopsis Rab GTPase homolog A1i); GTP binding. similar to ArRABA1h (Arabidopsis Rab GTPase homolog A1h), GTP binding [Arabidopsis thaliana] (TAIR:AT2G33870.1); similar to GTP-binding protein [Pisum sativum] (GB:BAA02112.1); contains InterPro domain Rab11-related (InterPro:IPR015595); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras (InterPro:IPR013753); contains InterPro domain Small GTP-binding protein; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain RNA polymerase sigma factor 54, interaction; (InterPro:IPR002078) Range:  from: 10036952    to: 10037684    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g28560.1    Description:  SRD2 (SHOOT REDIFFERENTIATION DEFECTIVE 2); DNA binding. similar to unnamed protein product [Vitis vinifera] (GB:CAO43481.1); contains domain PTHR13421 (PTHR13421); contains domain PTHR13421:SF7 (PTHR13421:SF7) Range:  from: 10038024    to: 10041439    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version