Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                            ------>ZmHOX2a(2)                                                                         --------->At4g35610                                                                         <------ZmHOX2a(2)                                                        --------->AtLEC2--------->ARR14(2)                                                --------->YAB1          <---------ARR14(2)                                               <---------YAB1--------->MYB46(3)                                   --------->GLK1(2)    --------->ANAC58--------->GLK1(2)                                   <---------ARR14(2)   --------->ANAC58<---------AGP1                                   --------->ARR14(2) <---------ICU4   <---------ARR14(1)                                   --------->ARR11(3)<---------ATHB12  <---------CCA1(2)                                --------->AHL20(2)<---------YAB1    <---------LBD16                        ------>ZmHOX2a(1)    --------->CCA1(2)  ------>MYB46(1)                 -----                       --------->TOE2(3)    --------->ARR14(2)  ------>MYB83                    -----                    --------->ARR14(2)      <---------ARR14(2)------->GAMYB  ---------->DOF2    -----                    <---------ARR14(2)   <---------ANAC46   -------->P--------->LBD16     --------->ANAC58 ----->ARR11(3)   <---------MYB46(3)   <---------LBD16--------->YAB1<---------At4g35610   --------->ANAC58 ------ARR11(3)  --------->ALFIN1 --------->RVE1(1)--------->YAB1----------->RAV1(2) --------->MYB46(3)   atgtttactctcaacacaagtggttcctcaaaaaaaaaatctgggggatatgataatcatgcaaccagcctgcggatctgaaagacaacaacacgaacac  9979400                                                                            ----------->GT1                                                                            <----------ID1                                                                          ---------->DOF2                                                                        --------->AHL20(2)                                                       <-----------GT1  --------->YAB1          --------->ANAC58                            --------->AHL20(2)<---------AHL20(2)          --------->ANAC58                        <---------AHL20(2) --------->YAB1    ---------->DOF2                    <---------AHL20(2)          --------->AHL20(2)  --------->AtMYB61                    --------->AHL20(2)       --------->AHL20(2) ---->ANAC46  <---------DOF5.7(2)     --------->AHL20(2)        <---------AHL20(2)        --------->YAB1 ---->ANAC58  ---------->DOF2 <---------MYB46(3)  --------->AHL20(2)<---------AHL20(2) <----------DOF2 ---->ANAC58--------->DOF5.7(2)       <---------AHL20(2)      <---------WOX13(1)  ---------->DOF2   gagaccaaaagcacgttaaagcccttcaagagttgttgtattaatttagttttaaattaacttgatttatataataaaaagaaaaaaagctttgataaac  9979500                         --------->ANAC58                         --------->ANAC46                         <---------ANAC55(2)                         --------->ANAC55(2)                         --------->ANAC58                                                         <--                 --------->ANAC46            ------>ZmHOX2a(1)                                    ---          --------->ARR14(2) --------->ARR14(2)                                                   <--          <---------ARR14(2) <---------ARR14(2)           <---------AHL20(2)                     ----     ------->GAMYB ---------->DOF2          --------->TOE2(3)                                    <---    --------->ANAC46 --------->ANAC58    --------->ARR14(2)        <----------DOF2            -------  --------->MYB52(1) --------->ANAC58    <---------ARR14(2)     <-----------GT1               <------   acatcaacggcagaaacacacataagcacgcgattcgctgtagaatcctcaagtttcgattttttttttcttttcatttacaacaaaaaaaaacaagatt  9979600         ---------->DOF2                                                        --------->HSFB2a(2) -------YAB1                                               <---------------AtSPL8 ------>AHL20(2)                                     --------->At4g35610        <---------HSFB2a(2) -------AHL20(2)                          <-------GAMYB    --------------->AtSPL8           <-------- ----->AHL20(2)          ---------->DOF2 ----------->GT1   --------------->AtSPL3        <-----------RAV1(1) ------AHL20(2)      ---------->DOF2     <---------MYB46(3)<---------------AtSPL3 ---------->DOF2 -->ARR11(3)----------->GT1            <------ZmHOX2a(1)--------->ATHB12  <---------------AGL15 ---ARR11(3)------------------------>ANAC81          <---------At4g35610  --------------->AGL15     <   ttaattaagaagaaaggcaaaaaaaaagaaaggaatatgaaggaggttgaaattgagatgagtggtactactactactactactagaagccctgttgttg  9979700                                     <------------CBF                                    --------->ATHB51                                 --------->YAB1                                                   <--                                 <--------HAHB4                                         <----------DOF2       <----------DOF2          <---------YAB1                              --------->ARR11(3)   <---       <---------DAG2        <---------YAB1                 <---------YAB1  <---------AHL20(1)  <---- -MYB46(3)                 <-----------GT1 <---------MYB46(3)  <---------YAB1           *TSS  <------ -----------GT1    <-----------GT1 <---------YAB1   ------>ZmHOX2a(1)      <---------CCA1(2)<--------   tttttcttcctttttggtttttatcgattttactattattattgtttgttcttcctcttcttcttattcttactcttatatattctacttctttttattt  9979800       <---------TOE2(3)                                                                --------->ARR14(2)      <-----------GT1                                                                   <---------ARR14(2)  --------->AHL20(2)                                                                   <---------MYB52(1)  <---------AHL20(2)                                                                 <---------MYB46(3) -------AHL20(2)                                                                 <---------ANAC58 ------YAB1               --------->MYB52(2)                                     <---------ANAC58 -----AHL20(2)     <-----------RAV1(2)                                           <---------RAP2.6(2) ---YAB1--------->ANAC55(2)   <---------MYB46(3)                           <---------YAB1 <---------LBD16 -AHL20(2)        <------ZmHOX2a(2)     ---------->DOF2            <----------DOF2 ------>NtERF2    <   ttatttttttacgtttttggatcagggtttgtttgttcaatagaaagccctagtttttgtttttgtgttctttgattcttcttgcggccgtttctgggtt  9979900                                                                  <------MYB83                                                                  <---------MYB46(3)                                                                  <------MYB46(1)                                                                 <---------DEAR3(1)                                            <------ZmHOX2a(2)   <---------MYB52(1)                                            ===================HOX2a_HOX2a                                           --------->ARR11(3)  <-------GAMYB                                           <---------ARR11(3) <---------MYB46(3)                                ----------->HVH21   <------ZmHOX2a(2)                  --------->YAB1                                ----------->TGA1   <---------ARR11(3)               --------->YAB1                              <---------At4g35610  --------->ARR11(3)               <---------ICU4      <<<<<<<<<TBF1--------->AtLEC2  --------->At5g28300<------ZmHOX2a(1)     --------->TOE2(3)   <<<<<<<<<TBF1 <---------AtLEC2  <---------DEAR3(1)<-----------RAV1(2)      --------->TOE1(3)     < <<<<<<<<TBF1<----------DOF2  --------->At4g35610  <---------ARR14(2)         --------->YAB1 >>>>>>>>   tcttcttcttcttctctttccatggagatgggttctgacggtgaagatcagaagatcaggagcgtcgttggtgatgctaatcttaataataagaagaaga  9980000              ------>ZmHOX2a(1)        -------->HAHB4              --------->ANAC58        <---------ICU4          <-----------HVH21        <--------ATHB1       <---------ANAC58       <---------ATHB51      <---------ANAC58    <---------At4g35610       --------->ICU4     <------MYB83           --------->At4g35610     --------->YAB1       <------MYB46(1)      <-----------RAV1(2)                   ----------->GT1<    <---------YAB1       <---------AtMYB61   <-----------HVH21              --------->TOE2(2)     <--  --------->YAB1       <------ZmHOX2a(1)     <-----------TGA1               --------->TOE1(2)    <--- ----------->GT1 ------>ZmHOX2a(1)  --------->ANAC58                        --------->TOE2(3)   <---- ---------WOX13(1)   <---------TOE1(3)       --------->TOE2(3)     --------->At4g35610         XXXXXX >TBF1 <---------YAB1<---------TOE2(3)      --------->ANAC46       <---------At4g35610        <------   agattgataataattcctcctctaaggatggtcgtgtcaagcctaaacgtcagatgaaaactccgtttcagcttgaaaccttggagaaagtttattcagg  9980100                                                                                                    <                                                                                                   --                                                                                                  <--                                                                                                  ---                                                                                                  <--                                                                                                  ---                                                                                                 ----                                                                                                 <---                                                                                                 ----                                                                                              <------NtERF2                                                                                              -------                                                                                            <--------       --------->At4g35610                                                                <----------       <---------At4g35610                                                            <---------ARR14(2) ---------YAB1                                                                        --------->GLK1(2) -----TEIL    <---------AHL20(2)                                                      --------->ARR14(2) ------ARR11(3)<---------AHL20(2)                                                   <---------HSFC1(2) -----GLK1(2) --------->AHL20(2)                  --------->ANAC55(2)          <------ZmHOX2a(1)<---- XXXXXXXXXXXXXX>MIR837-5P                 ---------->ID1             <---------YAB1 --------->HSFC1(2) ---TOE2(3)   <---------AHL20(1)      <----------DOF2    <---------TOE2(3)  <---------At4g35610<-----   ttcttattcatctcaattaatttgattcaatcttcgttctctttgtttttttaagtattgatgttgaatttttgattcagaggagaagtatccgtcggag  9980200 --------->TGA1a <---------O2 --------->O2 <---------TGA1a ------NtERF2 ---->NtERF2 -------DEAR3(1) ------>DEAR3(1) --------ID1 -------->HVH21 ----->ATERF1(1) ---NtERF2                             <---------ETT(2) ----->RAP2.3(1)                      <------ZmHOX2a(2)                       <------ZmHOX2a(1) -->ATERF1(1)                        --------->ARR14(2)                   ---------->DOF2 -DEAR3(1)                           --------->AGP1                    --------->At5g28300<------MYB46(1) -HVH21                         <-----------HVH21                      <-------GAMYB      <------MYB83 -----ATERF1(1)<---------At4g35610   <---------ARR14(2)               ----------->GT1  <------ZmHOX2a(1) ----DEAR3(1)  --------->At4g35610  --------->At4g35610       <---------YAB1 <----------ID1   gcgacgagggctgagttatctgagaaattggatttgtcagatcgacaattacagatgtggttttgtcatagacggttaaaggacaagaaggatggtcagt  9980300  Previous    Next  AGI:  At1g28420.1    Description:  HB-1 (homeobox-1); transcription factor. similar to homeobox transcription factor, putative [Arabidopsis thaliana] (TAIR:AT5G44180.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66398.1); similar to DDT; Homeodomain-related [Medicago truncatula] (GB:ABN08705.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN65380.1); contains InterPro domain DDT (InterPro:IPR004022); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain Homeobox; (InterPro:IPR001356) Range:  from: 9979788    to: 9987624    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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