Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                  ---------->DOF2                                                           <----------ID1                           -                                                           ----------->GT1                          <      <------ZmHOX2a(2)   --------->At4g35610            ---------->DOF2                       ------     <-----------HVH21    --------->ZAT2             <----------ID1                           ------- ---------REM1(2)        --------->ANAC46           ------------------------>ANAC81     ------->GAMYB ----GLK1(2)    <---------ATHB12                   ---------->DOF2              <---------MYB46(3)  -   tctacacgatcagagccaatcgattcccagcaaacaaaacaatacaattagcaaaaagaaaaagaaaaaagagaagccttggtggttcaacccaaaacca  9978900                                          --------->At4g35610                                          <---------ZAT2                                     --------                                 --------->ARR11(3)                                          <-------                        <---------MYB59   <---------At4g35610                                <-------                        <---------------AGL15                                                --------                        --------------->AGL15  <---------ZAT2                             <---------At4g35610                       ----------------->AGL2  --------->ZAT2                             --------->At4g35610           <----------ID1      <---------TOE2(3)            --------->ATHB12            =============       ---------->DOF2 --------->ANAC46   --------->ZAT2   <---------YAB1              <------ZmHOX2a(2) -------->ANAC58       ----------------->AG    <---------At4g35610        <---------YAB1------>ZmHOX2a(2) ---------MYB52(2)     ----------------->AGL1  --------->At4g35610     <---------ARR11(3)<-----------RAV1(1) --->AtMYB61         <-----------GT1--------->GLK1(2)      <------ZmHOX2a(2)           ============== -->MYB46(3)       <---------DAG2<---------ARR11(3)       --------->ARR11(3)          --------->ARR14(2) -------->ANAC58   <----------DOF2<---------RVE1(1)       <---------ARR11(3)          <---------ARR14(2)   ccacgaacaaaaagaaacaaactttacccaattgagatattctgagcttagctgagtccagatcattgatcaagttctgattagaaccgatctgctgctg  9979000                                                                                                <----                                                                                              -------                                                                                              <------                                                                                              <------                                                                                             <------NtERF2                                                                                            ---------                                                                                            ------>NtERF2                                                                                           --------->ANAC46                                                                                           <---------LBD16                                                        --------->At4g35610         <---------TOE1(2)                                                        <---------At4g35610    --------->ARR14(2)      ----------->GT1                      --------->ZAT14                     <---------ARR14(2) ->At4g35610                    ----------->GT1         ------>NtERF2         --------->GLK1(1)<----- --ZAT2               ----------->GT1      --------->At4g35610             --------->LBD16 --------->LBD16 --At4g35610         --------->ALFIN1      --------->ZAT2   <---------ALFIN1  <---------GLK1(1)------ ->ZAT2<------ZmHOX2a(1)        <---------YAB1--------->At4g35610        <---------LBD16  <---------HSFB2a(2) =============HOX2a_HOX2a     --------->YAB1 --------->RAP2.3(3)      --------->ZAT14     <---------LBD16 =============HOX2a_HOX2a    --------->ICU4<---------At4g35610        <---------ZAT14  --------->DOF5.7(2)   gacttgagaggagaaaacgaagagtggtgaaatgatgaaaaacagagcagccaaatgcagccccattctctgttcaccggagttccgacgttcccggcgt  9979100                                                         --------->HSFB2a(1)      --------->ANAC58                                   <---------HSFC1(2)      --------->ANAC58                                   --------->HSFC1(2) --NtERF2                                             ---------->DOF2      <----------DOF2 -->DEAR3(1)               ------>ZmHOX2a(1)         <---------WRKY38(1) <-------TEIL ---DEAR3(1)        <---------CCA1(2)                <---------WRKY45<---------TOE2(3) ---ANAC46        <---------ANAC58              <---------ANAC58     <---------TOE1(3)        ------- >LBD16   ----------->RAV1(1)                --------->GLK1(1)     ---------->DOF2           <-------TEIL ------HVH21      <---------ANAC58          --------->ARR11(3) ------>ZmHOX2a(1)     ------>ZmHOX2a(1) >NtERF2  --------->MYB52(1)     <<<<<<<<<TBF1  <---------ANAC58--------->TOE1(1)--------->ARR14(2)   cggaaactaagccaacagtttcgtctctcctcttcttcttcagagagatttcgagtcaaagcttcctcgtaaaggttctttcgattcctctgtgattcat  9979200                                                                        <---------ZAT14                                                                        <---------ZAT18              <---------LBD16                                           --------->ZAT14             <---------LBD16                                          --------->ZAT14            ----     <---------ANAC46                                                 <---------ZAT14            <---    <------NtERF2         <---------ARR11(3)                      <------ZmHOX2a(1)     --------->DAG2  <---------DEAR3(1)      --------->GLK1(2)                     --------->ANAC58       ---------->DOF2 --------->SPL7--------->LBD16                       *TSS  <----------ID1           <---------------AGL15 -->ATHB12<---------ZAT14--------->RVE1(1)      ----------->GT1 --------->ANAC58  ------------>CBF   agggacggcgagtaaaccgggattaaaaaatctgaattgaagtattgaaccggttttaaaaacgacaaggactgtacacttgaaaacaataaagggcaag  9979300                                                                          ------>ZmHOX2a(2)                                                                         --------->At4g35610                                                                         <------ZmHOX2a(2)                                                        --------->ANAC58--------->GLK1(2)                                                --------->YAB1          --------->ARR14(2)                                               <---------YAB1--------->MYB46(3)                                   --------->ARR14(2)   --------->ANAC58<---------AGP1                                   <---------ARR14(2)   --------->AtLEC2<---------ARR14(2)                                   --------->GLK1(2)  --------->YAB1   <---------ARR14(1)                                   --------->ARR11(3)<---------ATHB12  <---------CCA1(2)                                --------->AHL20(2)<---------YAB1    <---------At4g35610                        ------>ZmHOX2a(1)    --------->CCA1(2)  ------>MYB83                    -----                       --------->TOE2(3)    <---------ARR14(2)  ------>MYB46(1)                 -----                    --------->ARR14(2)      --------->ARR14(2)------->GAMYB  ---------->DOF2    -----                    <---------ARR14(2)   <---------ANAC46   -------->P--------->LBD16     --------->ANAC58 ----->ARR11(3)   <---------MYB46(3)   <---------LBD16<---------ICU4<---------LBD16       --------->ANAC58 ------ARR11(3)  --------->ALFIN1 --------->RVE1(1)--------->YAB1----------->RAV1(2) --------->MYB46(3)   atgtttactctcaacacaagtggttcctcaaaaaaaaaatctgggggatatgataatcatgcaaccagcctgcggatctgaaagacaacaacacgaacac  9979400                                                                            ----------->GT1                                                                            <----------ID1                                                                          ---------->DOF2                                                                        --------->AHL20(2)                                                       <-----------GT1  --------->YAB1          --------->ANAC58                            --------->AHL20(2)<---------AHL20(2)          --------->ANAC58                        --------->AHL20(2) --------->YAB1    ---------->DOF2                    <---------AHL20(2)          --------->AHL20(2)  --------->AtMYB61                    --------->AHL20(2)       --------->AHL20(2) ---->ANAC58  <---------DOF5.7(2)     <---------AHL20(2)        <---------AHL20(2)        --------->YAB1 ---->ANAC58  ---------->DOF2 <---------MYB46(3)  <---------AHL20(2)<---------AHL20(2) <----------DOF2 ---->ANAC46--------->DOF5.7(2)       --------->AHL20(2)      <---------WOX13(1)  ---------->DOF2   gagaccaaaagcacgttaaagcccttcaagagttgttgtattaatttagttttaaattaacttgatttatataataaaaagaaaaaaagctttgataaac  9979500                         --------->ANAC58                         --------->ANAC55(2)                         --------->ANAC58                         --------->ANAC46                         <---------ANAC55(2)                                                      ---                 --------->ANAC46            ------>ZmHOX2a(1)                                    <--          --------->ARR14(2) <---------ARR14(2)                                                   <--          <---------ARR14(2) --------->ARR14(2)           <---------AHL20(2)                     ----     ------->GAMYB ---------->DOF2          --------->TOE2(3)                                    <---    --------->ANAC46 --------->ANAC58    --------->ARR14(2)        <----------DOF2            <------  --------->MYB52(1) --------->ANAC58    <---------ARR14(2)     <-----------GT1               -------   acatcaacggcagaaacacacataagcacgcgattcgctgtagaatcctcaagtttcgattttttttttcttttcatttacaacaaaaaaaaacaagatt  9979600         ---------->DOF2                                                        --------->HSFB2a(2) ------>AHL20(2)                                           --------------->AtSPL3 -------AHL20(2)                                     <---------At4g35610        <---------HSFB2a(2) -------YAB1                              <-------GAMYB    <---------------AtSPL8           <-------- ----->AHL20(2)          ---------->DOF2 <---------MYB46(3)--------------->AtSPL8        <-----------RAV1(1) ------AHL20(2)      ---------->DOF2     ----------->GT1   <---------------AtSPL3 ---------->DOF2 ---ARR11(3)------------------------>ANAC81          --------->At4g35610  --------------->AGL15 -->ARR11(3)----------->GT1            <------ZmHOX2a(1)--------->ATHB12  <---------------AGL15     <   ttaattaagaagaaaggcaaaaaaaaagaaaggaatatgaaggaggttgaaattgagatgagtggtactactactactactactagaagccctgttgttg  9979700                                     <------------CBF                                    --------->ATHB51                                 <--------HAHB4                                                   <--                                 --------->YAB1                                         <----------DOF2       <----------DOF2          <---------YAB1                              <---------AHL20(1)   <---       <---------DAG2        <---------YAB1                 <---------YAB1  --------->ARR11(3)  <---- -MYB46(3)                 <-----------GT1 <---------MYB46(3)  <---------YAB1           *TSS  <------ -----------GT1    <-----------GT1 <---------YAB1   ------>ZmHOX2a(1)      <---------CCA1(2)<--------   tttttcttcctttttggtttttatcgattttactattattattgtttgttcttcctcttcttcttattcttactcttatatattctacttctttttattt  9979800  Previous    Next  AGI:  At1g28410.1    Description:  similar to myosin heavy chain-related [Arabidopsis thaliana] (TAIR:AT4G31340.2); similar to myosin heavy chain-related [Arabidopsis thaliana] (TAIR:AT4G31340.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN60307.1); contains InterPro domain Prefoldin (InterPro:IPR009053) Range:  from: 9976168    to: 9979253    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g28420.1    Description:  HB-1 (homeobox-1); transcription factor. similar to homeobox transcription factor, putative [Arabidopsis thaliana] (TAIR:AT5G44180.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66398.1); similar to DDT; Homeodomain-related [Medicago truncatula] (GB:ABN08705.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN65380.1); contains InterPro domain DDT (InterPro:IPR004022); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain Homeobox; (InterPro:IPR001356) Range:  from: 9979788    to: 9987624    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version