Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                            --------->ARR14(2)                          --------->GLK1(2)                        --------->HSFC1(2)                 ----------->HVH21                 ------->GAMYB                 --------->DEAR3(1)                                         xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                 --------->At1g77200                                      <---------CCA1(2)                --------->DEAR3(2)                                     --------->TOE2(3)                --------->MYB46(3)                                     --------->TOE1(3)      <------              --------->AtMYB61                                  --------->TOE1(3)    --------->DAG2              <---------ALFIN1                                   --------->TOE2(3)  ---------->DOF2        --------->WOX13(1)<---------ARR14(2)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->DAG2       <-------TEIL     --------->HSFB2a(1)  <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <------ZmHOX2a(1)<-  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)------->TEIL   <---------GLK1(1) ------->MYB52(1)--------->DREB2C(2)    <----------DOF2 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------ARR14(2) ------ARR10  --------->DEAR3(1)      <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------GLK1(2)--------->GLK1(2) ---CCA1(2)  --------->MYB46(3)   <-----------GT1       <---------ICU4----------->RAV1(2) <---------GLK1(2)   ctaacgacatccatcaccaccgacgaagaatccgattcactcctttcatcgaacaccatcatcccagccttaacctgaatcttaggaaaagggaatctcg  9956500                                                    <---------At4g35610                                                 --------->ABI4(2)                 <---------TOE1(2)               <---------ZAT2                --------->LBD16                  <---------At4g35610                       <-------GAMYB               <---------TOE2(1)              <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          <---------DEAR3(1)               <---------TOE1(1)             xxxxxxxxxxxxxxxxxxx>smallRNA(si3)         <---------ZAT18              =======================HOX2a_HOX2axxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->ALFIN1              ------>ZmHOX2a(2)              <---------DEAR3(1)                       xxxxxxxxxxxxxxx             --------->CCA1(2)               --------->ANAC46                        xxxxxxxxxxxxxxxx             <------ZmHOX2a(2)         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         xxxxxxxxxxxxxxxxx            <---------ARR14(2)        --------->HSFB2a(1)      xxxxxxxxxxxxxxxxxx>smallRNA(si3)    <-            --------->AGP1            xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            --------->ARR14(2)        --------->HSFC1(2)     xxxxxxxxxxxxxxxxx>smallRNA(si3)   <-----           --------->At4g35610  <xxxxxxxxxxxxxxxxxxsmallRNA(si3)           xxxxxxxxxxxxxxxxxxx>smallRNA(si3)           <---------At4g35610  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)          ----------->ARR10   <------ZmHOX2a(1)xxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <xxxxxxxxxxxxxxxxxx       <-----------HVH21    --------->MYB59 <---------LBD16  <-----------RAV1(2) --------->ANAC58  <x --------->MYB52(1)    <---------TOE2(3)  <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     --------->ANAC58  -- ---HSFB2a(2)========================HOX2a_HOX2a--------->ALFIN1         <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------MYB52(2)<---------TOE2(2)   <---------YAB1 <---------ZAT14    <-----------HVH21 xxxxxxxxxxxx   aactaacagagtcagatccgaggttgagattaggaaacgatgattccacggtgctgctctggctcaggctctgtgtcaaactcaagcagtgggcgttgat  9956600                                                                 <-------MYC2           =============                                                                 ------->MYC3        xxxxxxxxxxxxxxxx                                                                 <-------MYC3       xxxxxxxxxxxxxxxxx                                                           <---------TOE1(2)       xxxxxxxxxxxxxxxxxx                                                         <---------SPL7            --------->ALFIN1                                                        <---------ANAC58        <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                        <---------ANAC46  xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                   <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                  --------->ANAC58      <---------ANAC58xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                  <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxx xxxxxxxx>smallRNA(si3)           --------->ANAC58  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)---------->DOF2 xxxx>smallRNA(si3)               --------->ANAC46  xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->ETT(2) xxxx>smallRNA(si3)     <----------DOF2           <-------MYC3   ------->MYC2   <------ZmHOX2a(1) --------REM1(1)       <---------ANAC58           ------->MYC2   ------->PIF5 xxxxxxxxxxxxxxxxxxxxxxx ----TOE2(3)   <------MYB83 --------->At4g35610   <-------MYC2   <-------PIF5<-----------RAV1(2) xxsmallRNA(si3)       <---------ANAC58           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->LBD16  ------->MYC3<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxx --------->GT1 <------MYB46(1)  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxx>smallRNA(si3)   <---------At4g35610 <---------TOE1(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   gttgtaacaagggaagttggttttggctttagctccacgaaactcaatagcacgtttgtcgtaggcacgagcggcttcttcaggagtgtcgaaagtaccg  9956700                                              <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                              <-----------TGA1                                        <---------ANAC58                                        <---------ANAC46                                        --------->ANAC55(2)                                        <---------ANAC58        ----------->HVH21               xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       <-------MYC3                     <---------ANAC55(2)       <-------MYC2                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       ------->MYC3                   <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       ------->MYC2                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      --------->ANAC55(2)           --------->At4g35610      --------->ANAC58              --------->ZAT2      <---------ANAC55(2)           <---------ZAT2      =======================bZIP_DOF<---------DEAR3(1)      --------->ANAC55(1)           <---------At4g35610      --------->ANAC58          ------>ZmHOX2a(2)    xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      <---------TGA1a         --------->ARR11(3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          <--      <---------O2      xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                        <--      --------->bZIP60(2)------>ZmHOX2a(2)   xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                  <---      --------->O2      <---------GLK1(1)    xxxxxxxxxxxxxxxxxx>smallRNA(si3)          <---------MYB52(1)      --------->TGA1a  <---------ARR11(3)    <---------ANAC58    <---------ALFIN1      --------->DOF5.7(2)      --------->ANAC46 --------->ARR14(2)    <---------ANAC58   xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<--    ------------->DYT1 <---------ARR14(2)  xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         <-------GAMYB    <-------------DYT1 --------->ARR11(3)  --------->MYB52(1)   ------>ZmHOX2a(1)    xxxxxxxxxxxxxxxx ===============bZIP_DOF--------->GLK1(1) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   ------->GAMYB     <--- xxxx>smallRNA(si3)   =================HOX2a_HOX2a<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxx xxxx>smallRNA(si3)   <------ZmHOX2a(1)<------NtERF2 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      <xxxx >smallRNA(si3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxx>smallRNA(si3)      <---- xxxxxxxxx>smallRNA(si3)<------ZmHOX2a(2)xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->MYB52(1)------- >smallRNA(si3)   ---------->DOF2xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxsmallRNA(si3)    xxxxxxxx xxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  ------>ZmHOX2a(1)   --------->TOE2(3)   agccagacacgtgacttcttgaaaggatctctgatctcggctgcgtaacgtccccatggtctcttcctcactcctctgtaacggactccgttaccttcgt  9956800                          <---------DEAR3(2)                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                          xxxxxxxxxxxxxxxxxx>smallRNA(si3)                         <---------DEAR4(1)                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           <------NtERF2 xxxxxxxxxxxxxxxxxxx>smallRNA(si3)           ------>NtERF2 <---------MYB46(3)           <---------ATERF1(1)          --------->DEAR3(1)          --------->RAP2.6(2)          <---------DEAR3(1)         --------->SPL7<-----------HVH21         <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)         --------->RAP2.3(1)         --------->ATERF1(1)        --------->DREB2C(1)        <---------DREB2C(1)        --------->ATERF1(1)        <---------ATERF1(1)       ------>NtERF2  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       <---------SPL7 ------->GAMYB       xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      <---------ATERF1(2)<---------At1g77200      <---------RAP2.6(2)<---------DREB2C(2)     --------->RAP2.6(3) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   ----------->HVH21  xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              <---------ARR14(2) ----MYB46(1)         <-----------RAV1(1)            <---------ARR11(3) ----MYB83--------->RAP2.3(2)------>NtERF2--------->MYB46(3) ------TOE2(2)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) -------MYB46(3)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxx>smallRNA(si3)<-----------GT1      ----------->RAV1(1) ------TOE1(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->ARR14(2) xxxxxxxsmallRNA(si3)<------------AtMYB77 <---------MYB52(2)                                        < xxxxxxxxxxxxxxxxxxxsmallRNA(si3)----------->HVH21  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          xx -----MYB52(1)  xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          <--- -->MYB52(2)<------NtERF2<---------DEAR3(1) --------->ANAC46                                  xxxxxxx xxxxxxxxxxxxxxx>smallRNA(si3)<------NtERF2------->GAMYB                                ---------->DOF2   tggttttgacggccgccgttttaactgtcggtgccatgacaacaacaaacaacaagatttgtttatgtaagaaaaattgtttatgtaagaaaaagaaacg  9956900                                                                                             --------                                                                                            <------NtERF2                                                                                            xxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                         <------NtERF2                                                                                         ------>NtERF2                                                                                         --------->ATERF1(1)                                                                                        <---------ATERF1(1)                                                                                        <---------SPL7                                                                                        ------>NtERF2                                                                                       <---------RAP2.6(2)                                                                                       --------->ATERF1(1)                                                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                              --------->ANAC58         <---------ATERF1(2)                                                              --------->ANAC58         <---------RAP2.3(2)                                                              <----------ID1           --------->ATERF1(2)                                                          <------ZmHOX2a(1)            <---------DEAR3(1)                                                       <------ZmHOX2a(1)              --------->ATERF1(1)                          *TSS          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          <---------ATERF1(1)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  --------->YAB1      --------->YAB1  --------->ALFIN1    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<------ZmHOX2a(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <------ZmHOX2a(1)   <---------ANAC55(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <xxxxxxxxxxxxxxxxxx ---------TOE2(3)     <---------ANAC46 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxx>smallRNA(si3)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    ---------->DOF2------ -------CDC5  ------------>MYB.PH3(2) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      xxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxx>smallRNA(si3)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   ctgaggaagtttgatgagtttgttatgtgaagaagtttgtgaggacatcatttataaggaggagacgacaaatataagtcaacaaaggggcggccgagtg  9957000                        <---------ANAC58                        <---------ANAC55(1)                        <---------O2                        <---------ANAC55(2)                        <---------bZIP60(2)              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            <---------AHL20(2)   <----------DOF2           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     ----------->GT1    <---------ANAC46 <---------ARR14(2)     <---------ANAC58          ---------->DOF2 ->ALFIN1  --------->AHL20(2)<---------ANAC58   --------->ANAC58 xxxxxxxxxxx>smallRNA(si3)   <---------ANAC46   --------->ANAC46 xxxxxxxxxxsmallRNA(si3)--------->ANAC55(2)     --------->ANAC58 xsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      ---------->DOF2                          <-- xxx>smallRNA(si3)    <-----------GT1     ---------->ID1<------ZmHOX2a(1)   <----------DOF2    <----- --->ALFIN1<---------AHL20(2)<---------ANAC58  --------->LBD16      <---------ZAT14         <--------   gcagttttggtaattaaatccatattacgtggcttcttttttttgtctccacgaaagaggaaagtgagagtgaagaagcttttttttttttttttttctt  9957100                                                                <---------AHL20(2)                <<<<<<<<<GATA-1                                 <---------YAB1                      <        <---------ARR11(3)                        --------->AHL20(2)                              ---    ---------->DOF2       <---------MYB46(3)      <---------AHL20(2)                             <--- -------YAB1   <-----------GT1     --------->TOE2(3)    <---------YAB1                       <------- ----YAB1    <---------AHL20(2)  <---------AHL20(2)<---------AHL20(2)         <---------YAB1 -------- ---GT1 --------->ARR11(3)----------->GT1      <---------AHL20(2)  <---------TOE2(3)  ----------->GT1   attactaaaagacattttatctatttagtggttattttcttaaatgtttttatttattatgttgatattaatgttttttttttatagtttgttaattttt  9957200                                                                      <---------ANAC58                                                                      <---------ANAC58                                                                      <---------ANAC46                                                                    <<<<<<<<<<WRKY63                                                                 --------->REM1(2)                                                                --------->ALFIN1                                                <-------PIF5   <-------MYC2                                                <-------MYC2   ------->MYC3                                                <-------MYC3  <---------O2                                               --------->ANAC58------->MYC2                                               --------->ANAC58<-------MYC4                                        xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                        <------ZmHOX2a(1)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                      --------->ALFIN1   ----------->HVH21                                    <---------ANAC46   <---------ANAC58                                  <---------ANAC46     <---------ANAC58                                 --------->ALFIN1      <---------AtLEC2                             <---------ANAC46  --------->ANAC46------->MYC4                             <---------ANAC55(2)------->MYC3  --------->O2                             <---------ANAC58 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                             <---------ANAC58<---------ALFIN1 <--------ABF1                        --                       --------->ARR11(3)   --------->DEAR3(1)--------->ANAC55(2)                  xx                       --------->AHL20(1)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    xxxxxxxxxxxxxxxx                       <---------ARR11(3)  --------->ATERF1(1)<---------ANAC55(2)   --------------->AGL15                       <---------AHL20(1)  --------->DEAR3(2) <---------TGA1a       <xxxxxxxxxxxxxxxx      --------->AHL20(2)     --------->ANAC55(2)------->PIF5  <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<----      <---------AHL20(2)     <---------ANAC55(1)------->MYC2  --------->TGA1a       <---------------AGL15 ---------WOX13(1)  =================================================================================MADS_MADS ------>ATHB12      <---------------AGL15 --------->PCF2<---------WOX13(1)<-----------RAV1(1)   ----- ------YAB1      <-----------GT1 <---------AtMYB61  <----------DOF2--------->WRKY38(1)     <---------MYB46(3) --AHL20(2)     xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ====================bZIP_DOF   <-----------------AGL3 ->AHL20(2)   <---------GLK1(2)--------->ALFIN1<---------ALFIN1<-------MYC3       <---------At4g35610   tgattgattttatttggattttctatatattgcgtgtggtgaggagcccacgcgcttgcttgacacgtgttgacttgtgttgtctgcttctattggttag  9957300                                     <------ZmHOX2a(2)                                     --------->AHL20(2)                                    <---------ARR11(3)                                     --------->ATHB51                                    --------->ARR11(3)                                     --------->ATHB12                                    --------->AGP1                                         <---------ICU4                                    --------->ARR14(2)                          <---------ARR11(3)                                    <---------AGP1                              --------->ARR11(3)                            --------->ATHB12        <---------AHL20(2)          <---------ARR14(2)  ----------->GT1           <---------ICU4          --------->AHL20(2)          --------->ARR14(2) ------->MYB52(1)          --------->ICU4       <---------YAB1                 <---------CCA1(2) xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------ARR14(2)                <---------YAB1       <---------AHL20(2) >smallRNA(i)              <---------YAB1   <---------YAB1      <---------AHL20(2)     --------->AHL20(2) xxxxsmallRNA(si3)       <---------ICU4  <---------MYB52(1)     --------->AHL20(2)     <---------AHL20(2) -----At4g35610          --------->YAB1----------->GT1    <---------ANAC58     <---------GLK1(1) ---->At4g35610         --------->ICU4------>ZmHOX2a(2)   <---------ANAC58    ------->TEIL--------->ICU4   caaactgtaaacagacacgatgtgtgataatgattttagatctgttatttttgattaaatgcgagtttaattttgatatgtatatctgtttaattatttg  9957400  Previous    Next  AGI:  At1g28370.1    Description:  ATERF11/ERF11 (ERF domain protein 11); DNA binding / transcription factor/ transcription repressor. Identical to Ethylene-responsive transcription factor 11 (ERF11) [Arabidopsis Thaliana] (GB:Q9C5I3;GB:Q9SGN4); similar to ATERF-4/ATERF4/ERF4/RAP2.5 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4), DNA binding / protein binding / transcription factor/ transcription repressor [Arabidopsis thaliana] (TAIR:AT3G15210.1); similar to putative ethylene-responsive element binding factor [Brassica rapa subsp. pekinensis] (GB:ABI54330.1); contains InterPro domain DNA-binding, integrase-type; (InterPro:IPR016177); contains InterPro domain Pathogenesis-rel Range:  from: 9955955    to: 9956926    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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