Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          <------NtERF2                       --------->RAP2.6(2)                     --------->ATERF1(1)                     --------->At4g35610                     <---------At4g35610                     <------NtERF2                    ------>NtERF2                    <---------DEAR3(2)                   <---------At1g77200                   <---------DEAR3(1)   --------->LBD16<------NtERF2   ------>NtERF2 <---------RAP2.3(1)  --------->DEAR3(1)<---------ATERF1(1)                       --------->ARR14(2)  <---------ALFIN1--------->ATERF1(1)                         <---------ARR11(1) ----->ZmHOX2a(1)<---------ATERF1(1)                          --------->GLK1(2) --->ZmHOX2a(2)  <-----------HVH21                           <---------ARR14(1) ---ZmHOX2a(2)   <---------SPL7                           --------->ANAC46 -----GLK1(2)   <---------ANAC58                      ------>ZmHOX2a(1) ---->ARR11(3)  <---------ANAC58                      <-----------HVH21 -----ARR14(3)  <---------ANAC46                     --------->TOE2(3) ---->AGP1      <---------bZIP60(2)               ------->TEIL<---------ARR14(2)                    - ---->ARR14(3)  <---------DEAR3(1)                --------->ARR14(2)   <-----------ARR10          <-- -----ARR11(3)  <---------bZIP60(1)               <---------ARR14(2)   <---------ARR11(1)       ----- -----ARR14(2)  --------->bZIP60(1)              <---------CCA1(2)     --------->ARR14(2)     <------ ---->ARR14(2)  <---------O2                   --------->ANAC55(2)     <---------ARR14(2)   --------- --->GLK1(1)   <------NtERF2                 --------->MYB52(1)        ------->TEIL       <------ZmHOX2a(2) ----GLK1(1)   --------->ATERF1(1)  <---------ALFIN1 --------->TOE1(3)<---------CCA1(2)  <---------ARR11(3) ---->ARR10  <---------DEAR3(1)<-----------GT1 <---------ANAC55(2)    <---------ARR14(1) --------->ARR11(3)   tcctccgccttcttggtggcgtcggcagccattttcccccatttccctaacgtatccttcaccgaatccatcgtatctgtccccaaaccaagatcaatca  9852000                                                                                  --------->ANAC58    ---------->DOF2                                                               --------->ANAC58   --------->YAB1                                                                 --------->ANAC55(2)  <---------ATHB12                                                          <------ZmHOX2a(1)      -- -------->WOX13(1)                                                         ----------->GT1         <- -------ATHB12                                                     <-----------RAV1(2)  <------ZmHOX2a(1) ---->WOX13(1)                                     <---------ARR11(3)--------->At4g35610--------->ATHB12 ---ATHB12                     <---------ARR14(2)  --------->ARR11(3)<------NtERF2<---------ANAC55(2) >WOX13(1)              <------ZmHOX2a(1)       >>>>>>>>>TBF1      --------->ATERF1(1) --------->ICU4   atcaatcaaaggcagaaattggattaggatgcgaaatcggatagagagaagaagaactcactccttggggcaggggaaggagaaacgtaaggattggatt  9852100                     --------->DEAR3(1)                     <---------ARR14(2)                     <---------ALFIN1                   <---------DEAR4(2)                   <---------ERF1                   <---------RAP2.6(1)                   <---------RAP2.3(1)                   ------>NtERF2                   <---------ATERF1(1)                   <-----------HVH21                   --------->RAP2.6(2)                   <---------DEAR3(2)                   <---------ORA47(2)                  --------->ATERF1(2)                  <---------RAP2.3(2)                              <---------ARR14(2)                  <---------DEAR3(1)                              <------ZmHOX2a(1)                 <------NtERF2                                   <------MYB46(1)                 --------->ATERF1(1)                           <--------P                 ------>NtERF2                               <---------MYB46(3)                 --------->RAP2.3(1)                     <---------ANAC58                <---------ERF1                           --------->TGA1a                <---------ATERF1(1)                      <---------O2------>ZmHOX2a(2)                <---------RRTF1(1)                       <---------TGA2(1)               <---------DEAR3(1)                        --------->TGA2(1)               <---------RAP2.6(2)                       <---------TGA1a               <---------RAP2.3(3)                       --------->bZIP60(1)               <---------RAP2.3(2)                       <---------bZIP60(1)               <---------RRTF1(2)                        ===============MYC_MYB               <---------ANAC46                          <---------ANAC46               <---------ANAC58                          <---------ANAC58               <---------RRTF1(3)                        <---------bZIP60(2)              <---------LBD16                            =============MYC_MYB            <--------P <------NtERF2                     --------->O2======================HOX2a_HOX2a           <---------ANAC58                              ===============MYC_MYB           <---------ANAC58                             ----------->STF1           <-------GAMYB   --------->ALFIN1           ----------->TGA1          --------->MYB55(2)                          ----------->HVH21          <---------MYB46(3)                       =========================HOX2a_HOX2a         <---------AtMYB61<---------MYB52(1)    ============================HOX2a_HOX2a      --------->ALFIN1------>NtERF2             <------ZmHOX2a(1)<------MYB83                     <--    <---------AtLEC2--------->ATERF1(1)       --------->ALFIN1<---------MYB52(1)               <-----    <---------ANAC58<---------ABI4(2)        ===============================HOX2a_HOX2a        ------    <---------ANAC58<------NtERF2            <------ZmHOX2a(1)<-------GAMYB             --------->ZAT14   <------NtERF2<---------RAP2.3(1)        --------->ALFIN1  <---------DEAR3(2)     <------ZmHOX2a(1)  ------>NtERF2<---------ANAC58 ---------->TaMYB80 <------ZmHOX2a(1) ================================ ------->At4g35610<---------RAP2.3(3)     ==================================HOX2a_HOX2a <---------ZAT14 --------At4g35610<---------ATERF1(2)     <------ZmHOX2a(1) <---------DEAR3(1)  <--------P <---------   ccgctggcatggtggttgcggcggcaccggtgggaataggctgaggaggaggaggagtgacgtcggtaggatcgagcttagggtaaggagcgtagtcaga  9852200                                    <---------DEAR3(1)                                    <---------MYB46(3)                                   --------->ALFIN1                                   <---------ANAC58                                   <---------ANAC58                                   <---------ANAC46                                   --------->ATERF1(1)                                  <------NtERF2                                  --------->At4g35610                                  --------->ATERF1(1)                                  <---------At4g35610                                 <---------ERF1                                 <---------ORA47(2)                                 <---------DEAR4(2)                                 <---------RRTF1(1)                                 <---------RAP2.6(1)                                 <---------ATERF1(1)                                 <---------RAP2.3(1)                                 ------>NtERF2                                <---------RRTF1(2)                                <---------RAP2.3(3)                                <---------RRTF1(3)                                <---------ANAC46                                <---------DEAR3(1)                                --------->ALFIN1                                --------->DEAR3(1)                                <---------ATERF1(2)                                --------->ATERF1(2)                                <---------RAP2.3(2)                                <---------RAP2.6(2)                               --------->RAP2.3(1)                               <------NtERF2                               <---------ABI4(1)                               ------>NtERF2                               --------->ATERF1(1)                              <---------RAP2.3(1)             <---------ICU4                              <---------ATERF1(1)             --------->YAB1                              <---------DEAR4(2)             <---------YAB1                             <---------DEAR3(1)             <---------ARR11(3)                            ------>NtERF2            --------->LBD16                           --------->TGA1a         <---------LBD16                           <---------bZIP60(2)     ------>ZmHOX2a(2)                           --------->O2           --------->ARR14(1)                         ------>NtERF2           --------->AGP1 --------->ICU4                        --------->DEAR3(1)       --------->ARR14(2)       --------->ZAT2   ----------->HVH21        --------->ARR11(3)       <---------ZAT2  <------NtERF2------>NtERF2--------->ARR11(1)       --------->At4g35610 <---------O2          <---------ARR14(2)       <---------At4g35610 <---------TGA1a      --------->GLK1(1)                         <---------TOE2(3)    <---------At4g35610--------->DEAR3(2)       <---------GLK1(1) <---------GLK1(2) --------->ATHB12    --------->At4g35610--------->ATERF1(1)     ----------->ARR10<---------YAB1     --------->ICU4  --------->ZAT18     <---------ATERF1(1)<------NtERF2------>NtERF2                <---------YAB1 ----ZmHOX2a(1)    <---------HSFB2a(1) <---------ANAC46     --------->ARR11(3)   --------->YAB1 ----At4g35610     <---------HSFC1(2)<------NtERF2--------->CCA1(2)             <---------ATHB12 --->At4g35610     <---------ATERF1(1) <---------ANAC58    --------->YAB1    <---------ALFIN1 ====HOX2a_HOX2a   --------->HSFB2a(1) <---------ANAC58   --------->ICU4    <---------ZAT18 --HVH21           --------->HSFC1(2)------>NtERF2<------ZmHOX2a(2)         --------->ZAT18        <<   ggagtgagcagcagccttggaaggctccgacgcggcggcgggcgtagaagagatccggccatgatcatgattctcttgcccactcatgatttgatgtttt  9852300                                                                                           <---------                                                                                          <---------ICU4                                                                                          <--------ATHB1                                                                             --------->ANAC58      --                                                                             --------->ANAC58     ---                                                                     --------->GLK1(2)    --------->ATHB51                                                                     --------->ARR14(2)   --------->ATHB12                                                              --------->HSFC1(2)          -------->HAHB4                                                              <---------HSFC1(2)         <---------YAB1                                                              <---------MYB46(3)----------->RAV1(1)<-                                                              <---------HSFB2a(1)        <---------ATHB51                            <---------AHL20(2)       *TSS  --------->CCA1(2) --------->ANAC46     ---                    <----------DOF2               --------->AHL20(2) <---------ARR14(2)  --------->ICU4       <----------DOF2  <---------AHL20(2)       ----------->GT1     ------->TEIL --------->MYB46(3)  <<<<<<<<<TBF1     <---------DAG2          --------->ANAC55(2)     <---------CCA1(2)  --------->YAB1 <<<<<<<TBF1      ------->TEIL              <---------ANAC55(2)     <---------GLK1(2) --------->AHL20(2)   cttcttcttctttcgaaatgaactttttatttttttggtttgggttaagtaatgaaataagagatggttcgaatctcgcaggcaacaaataataattgaa  9852400                           --------->ATHB51                           <---------ICU4                          <---------YAB1 --------->AHL20(1)               <---------MYB52(1)        --------->AHL20(2)              <-----------HVH21         --------->AHL20(2)                               --------->SPL7              <----------DOF2 <---------AHL20(2)                                         <---------ZAT18             --------->ANAC46<---------YAB1 <---------AHL20(2)      <------MYB83      <---------ANAC58 ---CBF     --------->LBD16<--------HAHB4<---------AHL20(2)         <---------DEAR3(2)<---------ANAC46 ------->AHL20(2) <---------ANAC58 --------->TOE2(3)                <------MYB46(1)   <---------ANAC58 ------>AHL20(2)  <---------ANAC58----------->GT1             ---------->DOF2     --------->ARR11(3) --------AHL20(2) <---------ANAC46--------->YAB1        <----------DOF2          <---------CCA1(2) ------>YAB1<------NtERF2 --------->ICU4<---------AHL20(2)  ----------------->AGL1<---------ARR11(3)   ttaaaatgtctgtccgcgttacgttggcattattaatcgtaaataatttaagtagcctctttcccaaagtcggtctaacatatatatctcgtgcggtctt  9852500                                                                  <---------HSFB2a(2)                                                                  --------->HSFB2a(2)                                                                  --------->HSFC1(1)                                      --------->ARR14(2)        ------>ZmHOX2a(1)                                      <---------ARR14(2)   <----------DOF2               ---------->DOF2     <---------ANAC46       <---------DAG2     --------->TOE2(3)            --------->TOE2(3)    --------->MYB52(1)    <-----------GT1    --------->ARR14(2)       --------->ANAC58         ----------->HVH21    --------->YAB1       <---------ARR14(2)       --------->ANAC46       --------->HSFB2a(2)   <---------ATHB51     --------->GLK1(1)   --------       --------->ANAC58       <---------HSFB2a(2)<---------AHL20(2)  <<<<<<<ZML2         ------->TEIL   aaacagtagacgaaacttaatgcaattagtttctgtaacggatactagtattcaattatacctttcctctagaacatatccataatccatgtatgtacac  9852600                                                                                                  <--                                                                                                  <--                                                                                                  <xx                                                                                               <-----                                                                                               <-----                          <---------ARR11(3)                            --------->AHL20(1)     <-----                        --------->ANAC58                                <---------ARR11(3)    -------             <---------CCA1(2)    --------->ARR11(3)                    --------->ARR11(3)  <--------      <---------ZAT18   --------->ANAC58                               --------->RVE1(1)  --------->ATHB12   <---------ANAC58  ------>ZmHOX2a(1)                                 --------->CCA1(1) <---------YAB1   <---------ANAC58 --------->TOE2(3)           <---------YAB1     --------->AHL20(2)<----------DOF2 ->ZAT18   <---------MYB52(1)     <---------ARR11(3)         <-----------GT1         <---------DAG2 <   cggttttgtgcccgtttatcttcctcaagaaattcagaccttcttcacttacgatttttgttttaactaaaaaatatcttattctaactttttgattgct  9852700                                                                              --------->MYB46(3)                                                                              <xxxxxxxxxxxxxxxxxxxxxx                                                                              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                             <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                             --------->ANAC46                                                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                             --------->ANAC58                                                                             --------->ANAC58                                                                           <---------ALFIN1                                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                          <---------WRKY38(1)                                                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                          <---------ETT(2)                                                                          <---------WRKY12                                                                         --------->PCF5                                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                   <-------MYC2                 -----                                                                   ------->MYC2                <xxxxx                                                                   <-------MYC3     <-----------GT1--                                                                   ------->MYC3<xxxxxxxxxxxxxxxxxxxxx                                                                  --------->TGA1a   xxxxxxxxxxxxxxxxx ----MYB83                                            ----------->GT1xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ----MYB46(1)                                         xxxxxxxxxxxxxxxx>smallRNA(i) ----------->HVH21 xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)           <---------ARR14(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ----ANAC46                                   --------->ARR14(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ----ANAC58                            <---------ANAC58       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <- ----ANAC58                            <---------ANAC58       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<-- -->ATHB12                             <---------ANAC46--------->At5g28300<---------ZAT18      <----- -WOX13(1)                      --------->GLK1(2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      <----- XXXXXXXXXXXXXXXXXXXXXMIR840   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxsmallRNA(i)<----   tggtttatgttttttagtttggagtccagaccataatccgtccgtgtgtatttggactgtaaaaacccacatgcggtccacccaattgacagttctaatc  9852800                                 xxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                              <------------AtMYB77                              xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                              --------->MYB46(3)        ----------->RAV1(1)   <------------MYB.PH3(1)  --------->YAB1             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xsmallRNA(le3)              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ---->YAB1                   <---------At5g28300                               <xxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxsmallRNA(l2)--------->ANAC46                          <---------TOE1(3) ------->YAB1               <-----------GT1        <---------AHL20(2)    <---------TOE2(3)  <-------- xxsmallRNA(le3)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxx>smallRNA(i2)        --------->ARR14(2)     --------->AHL20(2)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --------ICU4              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) -------YAB1             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ----ATHB12              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)       <---------At4g35610    <---------YAB1 ----YAB1                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      --------->At4g35610<----------DOF2 -----ICU4           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)       <-----------GT1<xxxxxxxxxxxxxxxxxxxxx   ataataacaacaacaaaacaagttagattgtaaccgctattgatataccacaaaaaattgctattttttccgatgaaggttaagagtgtctttatcattt  9852900  Previous    Next  AGI:  At1g28200.1    Description:  FIP1 (FH INTERACTING PROTEIN 1). Identical to GEM-like protein 1 (FIP1) [Arabidopsis Thaliana] (GB:Q9SE96); similar to GEM [Arabidopsis thaliana] (TAIR:AT2G22475.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61640.1); contains InterPro domain GRAM (InterPro:IPR004182) Range:  from: 9850134    to: 9852353    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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