Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                    --------->ARR14(2)                                                                  <---------ARR14(2)                                                          --------->ANAC46                         <-                                                          --------->ANAC58                         <-       --------->MYB52(1)                                 --------->ANAC58                       ---- ->NtERF2                                               <---------ALFIN1                       ------ ----ALFIN1                                       <---------CCA1(2)        <---------ZAT18  --------- --ATERF1(1)                                      <---------At4g35610      --------->ZAT14 --------->ANAC58 >ANAC46              <-------TEIL             <-------TEIL       <---------ARR11(3)     --------->MYB52(1) -->HVH21          <---------At4g35610      --------->KAN4(1)     --------->ARR11(3)  --------->YAB1 >ANAC58           --------->At4g35610     <---------KAN4(2) ---------->DOF2         <---------ATHB12 >ANAC58       <----------CDC5        ---------->DOF2  --------->ZAT14     <---------ZAT14 --------->ANAC58   ccctctcccaaacagaggctgagcttcatgagggttttggtaaagaacattcatctctccactcaaagtatcttcagtgttctcccaatcgaaacggaaa  9844600              --------->YAB1             <---------YAB1                                       <---------MYB52(1)   <---------ANAC58                                              --------->TOE2(3)   <---------ANAC58                                             <---------ANAC58      <-----------GT1 --------ANAC58                                                 ----------->GT1     <---------DAG2 --------ANAC58 <---------YAB1                             --------->ATHB12         <----------DOF2 ----->GLK1(2)<---------ICU4                            <----------DOF2   <----------DOF2 --->GLK1(1) --------->ICU4                 ------>ZmHOX2a(1)   <---------ANAC46 --------->ANAC58 -->GT1  <----------DOF2         <----------DOF2<---------ICU4  <---------ANAC58 --------->ANAC58   ttcttgctcggcttcatgatgactctcttcttaggctttgttgttcctaagtattgctctttcattgcgttaatctctttctcacgctttaccatctcta  9844700                             --------->ANAC55(2)                       <---------ANAC58                             --------->ANAC46                          <---------ANAC46                             --------->ANAC58                          <---------ANAC58                           <---------DOF5.7(2)                    <---------ANAC58                          <-------TEIL                            <---------MYB46(3)              <--                <-----------GT1           ------>ZmHOX2a(2)       <---------ANAC58         <---------             <----------DOF2 --------->ANAC58              --------->WRKY18(1)  <---------ANAC58  <--       ------->GAMYB     --------->DOF5.7(2)              <-----------HVH21     <---------ANAC58 <---   atttctcaaccctagctttaacttcacgttcacgaaactctcgatcgctctctctgtttcggtcatggtcgtggcttcgatgtcgttctcgtttcacatc  9844800                                                         <------NtERF2                                                         ------>NtERF2                                                        <---------RAP2.3(1)                                                       <---------ANAC46                                                       <---------DEAR3(1)                                                      <---------LBD16                                                   <---------ZAT2   =====================HOX2a_HOX2a                                           ----------->HVH21        <---------DEAR3(1)                                          ------>ZmHOX2a(2)         ------>ZmHOX2a(2)                                         --------->CCA1(2)         ======================HOX2a_HOX2a                                         --------->At4g35610       <------ZmHOX2a(2)                                         <------ZmHOX2a(2)        <---------ARR14(2)     <---------DEAR3(2)                 --------->ARR11(3)      <---------YAB1    <---------DEAR3(1)                  --------->AGP1<---------At4g35610  ------>NtERF2                         <---------AGP1--------->At4g35610  ------------>AtMYB77                  <---------ARR11(3)    --------->YAB1               <--------- ----------->HVH21 --------->ICU4       <---------ARR14(2)   ============================HOX2a_HOX2a -------LBD16      <---------YAB1       --------->ARR14(2)   <------ZmHOX2a(2)    ----------->HVH21 --GT1          <---------YAB1         <---------GLK1(1)--------->LBD16           ------>ZmHOX2a(1) -------ANAC46 <-----------TGA1        --------->GLK1(1)------>NtERF2           <---------ICU4 ------LBD16  --------->YAB1 --------->ALFIN1      --------->ZAT2 --------->ARR14(2)<<<<<<<GRF7   tcggggacggtttccatcgtcattatcggagttggagcgagagatctgaacgatgctgcggcgatcacgatcggcgatttcatcctgacagcgttttagg  9844900                                                                                                 <---                   <---------AtMYB61                                                        ------>ZmHOX2a(1)                 <----------DOF2            <---------GLK1(2)                              --------->TOE1(2)               <---------At4g35610          >>>>>>>>>ARR1                                  --------->TOE2(2)               --------->At4g35610       <---------TOE1(2)                              ------->TEIL     <----------DOF2      <------ZmHOX2a(1) >>>>>>>>>ARR2                          <---------AtLEC2 < -DOF2       <---------ZAT18<---------ARR14(2)                               <---------TOE1(2)*TSS --   gctaattcttttctgtgagctttggtgaggaatacgggcttcgtaagattgtcgaaatcgagcgtcttcttctccatcgcagttttcatgaatccttcga  9845000                                                                  --------->ARR14(2)                                                                  <---------ARR14(2)                                                               --------------->AGL15                                                               <---------------AGL15                                                              <-----------------AG                                                              ----------------->AGL1                                                              ----------------->AG        <------------CBF                                      <-----------------AGL1       --------->ATHB12                                       ----------------->AGL2     <----------DOF2       --------->At5g28300                <-----------------AGL3    <---------ANAC58      ----------->GT1                     ----------------->AGL3           ------    <---------ANAC58    <---------At5g28300                   <-----------------AGL2      ----------- ------TOE1(2)       <----------DOF2             --------->ARR14(2)                 <---------At4g35610 ------------CBF     <---------GLK1(1)           <---------ARR14(2)   ----------->GT1 ------->GAMYB ------->ATHB12  <---------TOE2(3)      ---------->DOF2 <---------CCA1(2)           --------->At4g35610   acgattgcttcattgaattagggatttacggtgaataagatggaaagaacagaaccgtatttcttccaaatatggaaacttacttcaactgaaggaaaaa  9845100                                                                 <---------AHL20(2)                                                                --------->AHL20(2)                                                             <---------YAB1                                                            --------->AHL20(2)                                                            <---------AHL20(1)                                                            --------->AHL20(1)                                                           --------->YAB1                                                           <---------AHL20(2)                                                           --------->AHL20(2)                                                          <---------YAB1                                                        --------->YAB1                                                       <---------AHL20(2)                                                       <---------YAB1                                                       --------->AHL20(2)                                                    <---------AHL20(1)                                                    --------->AHL20(1)                            --- ---->DOF2                      --------->SPL7     --------->AHL20(2)          ----------->GT1  <---- >GT1             <---------MYB52(1)      --------->MYB52(1)<---------AHL20(2) <---------ZAT6   -----   agcctgaactcactagccccgttatataggcccatacgaaggcataacagaaaatatataattatattaaatgtttcaatagtgtgattttaagttatat  9845200                 --------->ANAC46                 --------->ANAC58                 --------->ANAC58       --------->ARR11(3)                                                   <-------TEIL   ---------->DOF2       ---------->DOF2                            <---------AHL20(2) --------->YAB1  --------->YAB1                                    --------->AHL20(2) ------>WOX13(1) --------->ANAC55(2)      ----------->GT1      <---------ARR11(3)        <---------GLK1(2) -----AHL20(2)   --------->ANAC55(1)  --------->DAG2           --------->ARR11(3)        --------->ARR11(3) ---->AHL20(2) <---------DOF5.7(2)   ---------->DOF2       <---------At4g35610      <---------ANAC46   aaatcaaaagttattgtaaacgtaattcaaagtgtttggaaaagtggttttttgttttgttagatgatattaaatgagttcatgtttcttagattttgta  9845300                                                                                                    -                                                                                               <-----                                                                                              <------                                                                                            <--------                                                                                            ---------                                                                                         <---------AHL20(2)                                                                                         --------->AHL20(2)                                                                                        <---------AHL20(1)                                         --------->ANAC58                               <---------AHL20(2)                                         ----------->GT1                             <---------ICU4 <                                --------->AHL20(2)                        <---------YAB1--------->AHL20(2)                               --------->AHL20(2)                      --------->ICU4<--------HAHB4 -                 <---------ANAC46        --------->ANAC58         ----------->GT1   --------->ICU4  <           <---------YAB1  <---------AHL20(2)                   <-------GAMYB       <---------YAB1 --  --------->CCA1(2)        --------->AHL20(2)                  <---------MYB46(3) --------->YAB1 ----   agagatttaagttatatttgtgtgaaaatataaataaaaaaacaagtaaaaacaactaaacaaggctgttgtaaatatgatttagcataattaatttaac  9845400     ----------->GT1 <---------YAB1 -------->AHL20(1) ----TOE2(3) -----GT1 -AHL20(2)  --------->AHL20(1)                                                                 ------ >AHL20(2) --------->YAB1                                                                   --------- ---------AHL20(2)                                                                        ---------->DOF2 -------->AHL20(2)   <---------At4g35610            ================================================= ---------AHL20(1)  --------->ANAC58             <-----------GT1                       -------------- ------->AHL20(2)   --------->ANAC58            --------->AHL20(2)              --------->AHL20(2) ----->TOE2(3) <---------TOE2(3)  --------->AHL20(2)<---------------AGL15 --------->YAB1  --------->YAB1   attatatttgtaaaaataatgtaagctaatttagaaataaatccatagaattaactaaatttagagtttttttttagcataactaaatactataaagata  9845500  Previous    Next  AGI:  At1g28180.1    Description:  pseudogene, putative RNA helicase, blastp match of 64% identity and 1.1e-166 P-value to GP|13702821|gb|AAK38497.1|AC087181_13|AC087181 putative snRNP protein {Oryza sativa} Range:  from: 9843062    to: 9844994    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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