Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100       <<<<<<<<<TBF1         ------>ZmHOX2a(2) ---------GLK1(2)        <---------ARR11(3) --------At4g35610       --------->ARR11(3)                                                 --------- ------->At4g35610    <--------P                                                   --------->At4g35610 --------HSFC1(2)    <-------GAMYB                                <---------WOX13(1)        <-------- ------->HSFC1(2)   ----------->GT1                          --------->TOE1(3)     <---------ZAT2 -----At4g35610     <---------MYB46(3)         <-----------GT1<---------MYB52(1)   <---------At4g35610 --DOF2       ---------->DOF2     <---------ATHB12           --------->TOE2(3)    ------->TEIL      -   cagcttcttcttcttgaaaagatggttgatcttccactgatgaacaatttccccattcttcacccttaattgctgaaatcgatgcagctacttccgcttc  9815100                                                                                   --------->ANAC58                                                                    <---------ANAC58                                                       <---------TOE1(2)  ------>ZmHOX2a(2)   --------->REM1(1)                      <---------ZAT14           <---------ANAC58 ------>ZmHOX2a(1)       ------->TEIL     --------->ZAT14    --------->ICU4        --------->ANAC46 >At4g35610     <---------YAB1          --------->ANAC46     <---------YAB1        --------->ANAC58 -At4g35610 --------->WOX13(1)       --------->ZAT14  ------>ZmHOX2a(1) <---------ARR11(3)   -------- -------->TOE2(3) <---------GLK1(2)  <---------ZAT14  ===========================HOX2a_HOX2a <-------   atccttcaccatatcaatctgattctgcatcttcactacttcactaaactctcttcctagcttattattagcttgatctacaaacacacaattcaaatcc  9815200                                   --------->TOE2(3)                                  ------>ZmHOX2a(2)                                <---------ARR14(2)                    --------->GLK1(2)         --------->TOE2(3)        --------->MYB52(1)      --------->ARR14(2)       --------->TOE1(2)    --------->At4g35610                               <-------GAMYB      <---------MYB52(2)    <---------At4g35610                              <---------MYB46(3)  ----      --------->MYB46(3)    ----------->RAV1(2) <---------YAB1    --------->YAB1                 <--- ->ARR14(2)        <---------ARR11(3)         --------->YAB1     <---------ZAT6             <-------- --ARR14(2)        <---------GLK1(2)------>ZmHOX2a(1)    --------->YAB1      --------->MYB52(2)  ----   gatttgaaacaaacgactcaagattctatcaactgatcctcaattcaacgataattcaatctgaatactgataacgagtttgttgatcaacaattcacaa  9815300                                                                             --------->ANAC46                                                                            <---------HSFB2a(2)                                                                            --------->HSFB2a(2)                                                                      --------->ARR14(2)                                                                      <---------ARR14(2)                                                                     ==========================HOX2a_HOX2a                                                                     <------ZmHOX2a(1)                              --------->YAB1                    <---------ANAC46                    --------->GLK1(2)                           <---------ANAC58      <<<<<<<<<ARR2 <---------ARR14(2)                          <---------ANAC58      <---------ATHB12      --------->GLK1(2)  --------->CCA1(2)<---------DEAR3(1)        --------->ATHB12    --------->WOX13(1)     <---------GLK1(2)   --------->MYB52(1) <------NtERF2        <---------ARR11(3) ----->GLK1(2)<---------ARR14(2)     --------->CCA1(2)         <---------LBD16 --------->ARR14(2) ------ARR14(2)     ------->TEIL  <---------YAB1  <---------LBD16--------->LBD16       --------->ARR11(3) ---GT1       --------->ARR14(2)  <---------TOE2(3)    --------->GLK1(1) <-----------GT1<------ZmHOX2a(2) ----->ARR14(2)     --------->ARR14(2)   <------ZmHOX2a(1)   <---------DEAR3(1)<---------ARR14(2)  --   atctgacaatcaaacaaatacgaatccaagaatcttaagataaggagagaaacggggaaatcgatggcggaggatttaccagaaacgaagatcgattgaa  9815400                                                                          --------->ANAC58                                                                          --------->ANAC58                        <---------ARR11(3)                                --------->ANAC46                 --------->ATHB12                                    --------->ZAT6                 --------->ATHB51                                   ------>MYB46(1)                 <--------ATHB1                      <------MYB46(1)------>MYB83                 <---------ICU4                    <--------P       -------->P            <---------YAB1------>ZmHOX2a(2)    ================================RAV                  -          ----------->GT1<------ZmHOX2a(2)     <-----------RAV1(2)--------->AtMYB61                <-  --------->ATHB12      --------->ARR11(3) ---------->DOF2       --------->DEAR3(2)                -- --------->ICU4 <---------ATHB51    --------->TOE2(3)<------MYB83--------->MYB46(3)       <------ZmHOX2a(1) -------->DOF2  <---------AHL20(2)  <---------MYB59--------->ALFIN1----------->RAV1(1) <------ZmHOX2a(1)   gaaaagattggattgtgaataattgagatcgtttgcgacctaaattgaagcaggttgggacttgggaaccaacactaagcaatggggaaggaggaagagt  9815500                                                                               <XXXXXXXXXXXXXXXXXXXXMIR830                                                                              <---------DAG2                                                                      <---------ANAC55(2)                          --------->LBD16                             --------->ANAC55(2)              <---------GLK1(1)                                      <-------TEIL         ---------->DOF2 <---------LBD16     <---------WOX13(1)     --------->CCA1(2)     <---------YAB1     <---------LBD16     <------------CBF       <---------ARR14(2)             <--  --------->ICU4      <---------ARR14(2)   --------->ATHB12        --------->ARR11(1)             ---  <---------YAB1      --------->ARR14(2)  <---------YAB1         ----------->ARR10          --------- -------->YAB1--------->GLK1(1)         --------->YAB1       ----------->GT1  <----------DOF2 <------ --------YAB1--------->ARR11(3) --------->MYB46(3)  <---------ANAC46--------->ARR14(1)      <-------- ------->ICU4<---------ARR11(3)*TSS------------>CBF ----------->GT1--------->ARR14(2) ---------->DOF2   gatgatgatgaaaaagatttctcaaatcggggaaaccatcaattttgattggaggggtataaatggtaagatacgtttcgctttttcccaaagtacttaa  9815600                                                                                 <<<<<<<<<<AtTINY2                                                                                --------->RAP2.6(3)                                                                               --------->MYB52(1)                       <-----------GT1     --------->DAG2                     ----------->TGA1        --------->AHL20(2)                ---------->DOF2              ----------->GT1        <---------AHL20(2)    --------->ANAC58                        ----------->GT1       --------->AHL20(2)  <---------REM1(2)                         --------->DAG2 -------AHL20(2)     <-----------GT1  <------ZmHOX2a(1)             ---------->DOF2 ------>AHL20(2)<---------AHL20(2)   ----------->GT1           --------------->AGL15 >ANAC55(2)    <---------AHL20(2)--------->GLK1(2)             <---------------AGL15 ---AHL20(2)<---------AHL20(2)--------->ANAC46                ======================================= -ANAC55(2) --------->AHL20(2)--------->ANAC58                ----------------->AGL3     <-----------   ttttttatatttaattttttatttttctctacacgaatcaggaaaaaagtcgaatcgtttttggaccataaaaagttaaaatgacggtagagcttaaaat  9815700       --------->AHL20(1)       <---------AHL20(1)       --------->ARR11(3)       <----------DOF2      <---------AHL20(2)--------->GLK1(2) <---------MYB59       --------->YAB1 ======MADS_MADS    --------->YAB1  <---------ANAC58              <----------DOF2              ------ ------AGL3      ----------->RAV1(1)<---------ANAC58        <----------DOF2           ---------->DOF2   gggcctaaatattttggcccaacaataatctgaactttgcttagtcactagagttttgttttctttttctttacaaactgaccataaacaaagtgaatca  9815800               <---------TOE2(3)               <---------YAB1         <---------AHL20(2)                                  --------->CCA1(2)         --------->AHL20(1)                                 <---------ARR11(3)         <---------AHL20(1)                               <---------YAB1      ------>MYB46(1)                                   --------->YAB1      ------>MYB83--------->CCA1(2)                 --------->AHL20(2)    <---------MYB111(1)                       --------->ANAC46    <---------MYB59                           --------->ANAC58                                    ---    <---------MYB46(2)                        <---------ANAC55(2)               ---------------------    --------------->AGL15                     --------->ANAC55(2)              <---------At4g35610---    --------->TOE2(3)                         --------->ANAC58                 --------->At4g35610<-- --->YAB1--------->AHL20(2)           --------->YAB1<---------AHL20(2)   ---------->DOF2         ----   aaactacctaatttattaagataaacgatttgtttgtttatcaaaactacgtaatttatcaagataaacaataaacaaaggagatgacaaaaaaaaaaaa  9815900      ---------->DOF2 ------>AHL20(1)                                                                           --------->AHL20(2) --->ANAC81                        --------->YAB1                                          <---------AHL20(2) ------>AHL20(2)                   ----------->GT1                        --------->AHL20(2) <------- -------AHL20(2)       --------->DAG2                        --------->YAB1      --------->TOE1(3) ----->AHL20(2)       ---------->DOF2       --------->ICU4  --------->AHL20(2)   --------->TOE2(3)   aaaattaacaaaggaagtttaccaaaaagtatttcaatagtaaaaaatgattttaaaacaaaataaaaattgacaaataaaaacattaactaattaaaca  9816000  Previous    Next  AGI:  At1g28120.1    Description:  Identical to Ubiquitin thioesterase otubain-like [Arabidopsis Thaliana] (GB:Q8LG98;GB:Q9C7E1); similar to otubain-like cysteine protease [Populus trichocarpa] (GB:ABU93349.1); contains InterPro domain Ovarian tumour, otubain (InterPro:IPR003323); contains InterPro domain Ubiquitin thioesterase Otubain (InterPro:IPR016615) Range:  from: 9812946    to: 9815531    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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