Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    <--                                                                   <---------MYB52(1)          ------                                                                  ----------->GT1            <------- -->YAB1     <---------DOF5.7(2)             ------->TEIL       <---------ANAC46             -------- ---ICU4   --------->DOF5.7(2)   <---------ZAT18        <---------LBD16               --------->ANAC58 --YAB1    <---------MYB52(1)    --------->ZAT18        ----------->RAV1(2)           --------->ANAC58   caccttgaaatgcgttaactatttggacatgttattgcacttctatgaacatatattcccctggtgtctggtattttagtttttgaacaagaaatgatct  9782600                                                                                        <---------YAB1                                                                                      <---------ICU4                                                                                     <---------YAB1                                                                       <---------MYB52(1)   <-----------GT1          <---------YAB1                           --------->ATHB12--------->ICU4 -------MYB52(1)         <-------TEIL                          --------->DAG2      --------->YAB1 >ZmHOX2a(2)            <--------P                            ---------->DOF2 <---------ANAC55(2) --ARR11(3)          <---------TOE1(3)               <---------At5g28300 <---------MYB46(3) ->ARR11(3)          <---------TOE2(3)            <-----------HVH21 <---------YAB1<---------YAB1   gttttttactaggtaaactgtttaaggttgatgatacaacatgaattatctgagtcacagccaaaaaagtaccattggttaagtatgattatgacttaaa  9782700                                                                                --------->REM1(2)                                                                               --------->ALFIN1                                                                              <-------MYC3         --                                                                              ------->MYC2         <-                                                       <---------ZAT14        <-------MYC2         --                                                       --------->ZAT14        ------->MYC3         --                                                     --------->ZAT14         <---------ANAC58      --                                                     --------->ZAT18         <---------ANAC46      <-                                                  <---------ANAC46           <---------ANAC58     <--                                   --------->MYB46(3)<---------ZAT14       <---------ANAC46  --------                                  -------->P    <---------ICU4            <---------LBD16 <------MYB46(1)                                 --------->MYB52(1)<---------------AtSPL8 ------>NtERF2 <--------P<--                               <---------MYB52(2)<-----------------------TaNAC69(2)    <-------GAMYB-                            --------->ZAT18    --------->ICU4            --------->DEAR3(1)  --------                            <---------ZAT18  <---------ICU4             --------->ATERF1(1)  --------                    --------->RVE1(1)       <---------YAB1             --------->At4g35610<------MYB83        <---------TOE2(3)  ------>NtERF2    --------->ICU4    --------->At4g35610     --------->ATHB12       --------->YAB1     --------->ANAC46--------->YAB1      <---------At4g35610     <---------MYB46(3)   acaaaactataatgttttaaaaatatcgaggccactaaccgataacataattatgtgtacagtcagaagaatgagccgcgcgtgtagatggttggacgaa  9782800                                                                                                  ---                                                                                                <----                                                                                                <----                                                                                                <----                                                                                                -----                                                                                                =====                                                                                                <----                                                                                                <----                                                                                                -----  <----------ARF1                                                                              ------  ----------->HVH21                                                                           <------ --------->SPL7                                                                        ============== ----->MYC2                                                             ----------->RAV1(1)   <------ ------MYC3                                   <---------ALFIN1          ------>MYB46(1)------>MYB83 ----->MYC3                               --------->At4g35610         --------->MYB46(3)<---------ALFIN1 ------->TOE1(2)                     ----------->HVH21               --------->ANAC46  ------>MYB46(1) ------->TOE2(2)                    <---------MYB59        <----------DOF2<---------ATHB12    <------ ------MYC2                        ----------->RAV1(2)     ========================================== -------ANAC58         <---------ZAT14    <---------At4g35610    <----------DOF2       -------->P<--- ->ANAC58   <---------ANAC58       <---------At4g35610   <---------At4g35610          ----------->RAV1(1) -------ANAC58         <---------ZAT18 <<<<<<<GRF7   ------>ZmHOX2a(1)<---------MYB59--------->AtMYB61 -------->ALFIN1       --------->ZAT18--------->MYB52(1) --------->ZAT2 ------>MYB83 --------->MYB46(3) ->ANAC46   <---------ANAC58      ------->TEIL--------->REM1(1)  ==================================== ->ANAC58 --------->CCA1(2)      <-----------GT1 --------->AtMYB61 <-----------GT1  --------->MYB46(3)   acgtgcgacaagatgcgagcctgagtgctcaatatgtacctgacagctacacctcctccagctttctctttacccaacaattctccaccaacacgggcgc  9782900 --------->bZIP60(1) <---------bZIP60(1) -------->HVH21 -----ANAC58 --NtERF2 -----ANAC58 ---->ANAC55(2) ==============================MYC_MYB -----ANAC55(2) -----TGA1a ---->TGA1a >NtERF2 ---ANAC58 --------->ARR14(2) =====MYC_MYB            --------->ANAC46            ---------->DOF2 ---ANAC58 <---------ARR14(2)                    --------->ATHB12           <---------ANAC58 ---ANAC46<---------GLK1(1)                   <---------ANAC58              <---------ANAC58      --- =====bZIP_DOF        -------->P              <---------ANAC58     <---------ANAC46               <-- --------HVH21      <---------MYB111(1)       --------->TOE2(3)    <---------ANAC58*TSS          ---- =====bZIP_DOF --------->LBD16      <---------MYB52(1)             <---------ANAC58<---------YAB1----   gtgacctcatgaaaatccccaaactaccctcaaactctgtttttttttccttgattaaagagtcttccttcgtgtttttcttgttttcattccttccaaa  9783000                                                                            --------->MYB52(1)                                                                            <-----------GT1                                                      --------->YAB1     --------->CCA1(2)                                               <---------YAB1           --------->ARR14(2)                                             -------->ATHB1             <---------ARR14(2)                                             --------->YAB1            <------NtERF2<---------ARR11(3)                                             <--------HAHB4           --------->LBD16            <------------------------ANAC81  <---------ICU4          <---------ANAC46       <----------DOF2                      <---------ATHB12         <---------ANAC58 ------>ARR11(3)                            --------->ICU4           <---------ANAC58          <----- -------ARR11(3)       <<<<<<<<<TBF1   --------->HSFB2a(2)    <------ZmHOX2a(1)  <---------GLK1(2) -- ----->RVE1(1)      <<<<<<<<<TBF1   <----------DOF2  <---------ZAT6 <---------LBD16 <---------ARR14(2) ----->CCA1(1)   <<<<<<<<<TBF1 ------>ZmHOX2a(1)   --------->YAB1 --------->ALFIN1  --------->ARR11(3)   tatctatctcttttgtttcttcttcttcttctcctctgcttttggaatcattatagtgataagaggagatggcggatataacagaatatctagagagatc  9783100                                                                          <------ZmHOX2a(2)                                                                         <---------ARR14(2)  --------                                                                         --------->ARR14(2)  <-------                                                 <------MYB46(1)       --------->LBD16       <-------                                                 <------MYB83      <---------ARR14(2)        --------          <---------ZAT18                       --------->MYB59    --------->ARR14(2)--------->GLK1(2) -ZmHOX2a(2)          ------>ZmHOX2a(2)      --------->ARR14(2)   <---------GLK1(1) <---------GLK1(2) ------->AtLEC2    --------->ATHB12          <---------ARR14(2)------->TEIL------>ZmHOX2a(2) <-------   gatgcagaattgttcacttattgatcggagaagtagtatgggagatggatttggtatgagcgatgaacatatcccgatctcagatagattcttggagctc  9783200                                                   ---------->DOF2                                               ----------->GT1                                              <---------TOE1(3)                                              <---------TOE2(3)                                          ------>ZmHOX2a(2)                                        -- ->At4g35610                            <---------ARR11(3)                    <---------GLK1(2)====== --GLK1(1)--------------->AtSPL8        --------->ARR11(3)          ---------->DOF2            ------ --At4g35610                        <---------ANAC58           --------->ANAC46               ------- ->ZAT2<---------ZAT14              <---------ANAC58           --------->ANAC58            <--------- --ZAT2--------->ZAT14              <---------ANAC46           --------->ANAC58--------->GLK1(2)  <--   agttctcacttctctgttccttctcatttggaacagtgtcttgatcttaaggtaaaagaaaactcacacaaaaagaaacagattccttccatgtttcctt  9783300               <---------AHL20(1)       <----------DOF2    --------->ARR11(3)    <---------ARR11(3) <---------WOX13(1) ------->ATHB51--------->AHL20(2) ============HOX2a_HOX2a                                                                  --------->ANAC46 >ZmHOX2a(1)   --------->AHL20(1)                                             ----------->GT1       - -->TOE2(3)    <---------AHL20(2)                                       <---------------AtSPL3  ----- --GT1------>ZmHOX2a(2)     ---------->ID1        <---------AtMYB61  <---------YAB1       --------->ANAC58 -------YAB1  --------->AHL20(2)         ---------->DOF2       --------->ATHB12           --------->ANAC58   ataattgatctttcaattttattttgttttgtctcaaaatgctcaaagggttttggtttcaagcttgatttgtaattgtatggctaaactaaacgcctta  9783400                                                                                     <---------ANAC46                                                                                    <------NtERF2                                                                                  --------->ALFIN1                                                                                <---------ZAT2                                                                                --------->ZAT2                                                                                <---------ANAC46                                                                                <---------bZIP60(2)                           <---------LBD16                                      <---------TGA1a                          <---------ANAC46                                      <---------O2                     <---------ANAC58                                          <---------AtMYB61  <---------YAB1     <---------ANAC58                                      --------->At4g35610 -------->YAB1    <----------DOF2      <---------YAB1                     --------->GLK1(2) ---->MYB52(1) <---------AHL20(2)--------->AHL20(2)                     <---------At4g35610   actgataattctagtattttctttcgttttggggaataaatatgtttgaaattgctatgtagcatcaaattttgagatgctgaggtggggtttttgttta  9783500  Previous    Next  AGI:  At1g28060.1    Description:  small nuclear ribonucleoprotein family protein / snRNP family protein. similar to RNA splicing factor-related [Arabidopsis thaliana] (TAIR:AT3G55930.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41560.1); contains InterPro domain Pre-mRNA-splicing factor 3 (InterPro:IPR013881) Range:  from: 9779125    to: 9782687    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g28070.1    Description:  protein binding. similar to protein binding [Arabidopsis thaliana] (TAIR:AT2G33510.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70065.1); contains InterPro domain WW/Rsp5/WWP; (InterPro:IPR001202) Range:  from: 9782983    to: 9783985    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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