Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                              <--------                                                                                            ---------                                                                                           ----------              --------->GLK1(1)                                                            ----------              <---------GLK1(1)  --------->TOE2(3)                                         ==========   <---------WRKY45            <---------ARR11(3)                              <---------ARR11(3)   <---------WRKY12            --------->ARR11(3)                              --------->ARR11(3)   <---------WRKY38(1)   ---------->DOF2      --------->AHL20(2)              --------->GLK1(1) >AHL20(2)<---------HSFB2a(2) --------->GLK1(1)        <------MYB83           <---------GLK1(1) ----- -AHL20(2)--------->HSFB2a(2) <---------GLK1(1)        <------MYB46(1)   ---------->DOF2--------->KAN4(2)   tgtggtcaacttgtggaaatctcttggcaaagaaatcttatttatccaaaaaatagttggtatgaaaactcttggcaaagaaatcttgtttattccaaaa  9778700                                                              ---------->ID1                                                         <---------AHL20(1)                                                 --------->bZIP60(1)  <---------TOE2(3)                                                 <---------bZIP60(1) ---------->DOF2                                                <<<<<<<GRF7  <-----------GT1   <------MYB83                               ----------->HVH21 <----------DOF2   <------MYB46(1)                           <---------MYB59<<<<<<<<<<GT-3b -------AGL15             <---------ANAC58  <---------At4g35610 <---------------AGL15           ----- ------>AGL15             <---------ANAC58  --------->At4g35610 --------------->AGL15           <---- ------->AGL3             <---------ANAC46  --------->O2 --------->AHL20(1)      <---------ANAC46 ------->AGL2       --------->GLK1(1)       <---------O2 --------->ARR11(3)      <---------ANAC58 ===============================================================================MADS_MADS      <----- ---->YAB1          <---------GLK1(1) --------->TOE1(2)  <---------ARR11(3)      <---------ANAC58   atagttggtatgaagagtttggatttctgcttgtaagaaaactgcgacctgacatcaaatatttttctttttaaagataaatagcttgaattttcatata  9778800 ---->ARR11(3) -----ARR11(3)         <---------AHL20(2)          ---------->DOF2                            ------- ----CCA1(2) ------->TEIL              ---------->DOF2                       <---------ARR11(3)   tctctatagaagatgaatcgtcgatttttttttttttaagtaaaagatgatataaaagcccattagactcaaaattgaagaactatctcaagaaggaact  9778900                                                                  <---------MYB52(1)                                                               ===============================HOX2a_HOX2a                                                               <---------LBD16                                                               ------>ZmHOX2a(2)                                                              ================================HOX2a_HOX2a                                         <---------WOX13(1)   <------ZmHOX2a(2)                                       --------->MYB55(2)    <---------ARR14(2)                                       --------->ATHB12      --------->ARR14(2)                                       <---------MYB46(3)  --------->LBD16                                     <---------MYB52(1)   --------->HSFB2a(2)                          <---------ANAC58                <---------HSFB2a(2)                          <---------ANAC58               <---------LBD16                           --                         <---------HSFC1(2)              <-----------------AGL1                 -----                         --------->HSFC1(2)         <---------ARR11(3)                         ------                   --------->DAG2 <---------LBD16   --------->ARR11(3)                        <------                  --------->MYB52(1)<---------At4g35610  ----------------->AGL1        <------ZmHOX2a(1)             ----------------->AGL1 --------->LBD16<---------CCA1(2)        <---------At4g35610<----- -->GLK1(1) <---------At4g35610 <---------SPL7 --------->AHL20(2)--------->LBD16  <----------DOF2  --   caaaaatgggcttcagcccataagggaagcttgtagtccggtgattggattatatatcttccggatccggtatcgtttcgctccctttaggatttttccg  9779000                                                                           <---------MYB46(3)         <---------ARR11(3)                                                ----------->GT1          - <----------ID1                                                          <---------MYB52(1)       <-- ------->ANAC58                                                          <-------GAMYB       <------- ---->LBD16 <---------YAB1                                              --------->LBD16    <--------- --->HSFB2a(2)                                                        <---------LBD16  <---------CCA1(2) ---LBD16--------->GLK1(2)                                         --------->KAN4(2) <---------ANAC58 ----HSFB2a(2)                      ---------->ID1           <---------TOE1(2)       <---------ANAC58 ------->ANAC58     --------->ARR11(3)                       <---------TOE2(2)       <---------ANAC46   gaaggaacaaaaatctgattcagaacttggtttcgctggtcgttttggttctaatctgaatcgctggtttattccggttgtgaattttcgtatatttata  9779100                                                                              ------>NtERF2                                                                             <---------ALFIN1                                                                             --------->DEAR3(1)                                                                            <---------ABI4(2)                                                                            --------->MYB46(3)                                                                           <---------ATERF1(1)                                                                          --------->PCF2            -                                                                         =======================HOX2a_HOX2a                                                                         ======================HOX2a_HOX2a                                                                         <------ZmHOX2a(1)          -                                                                         ============================                                                                       --------->LBD16             --                                                                      --------->HSFB2a(2)  <---------YAB1                                                                      <---------HSFB2a(2)--------->YAB1             --------->ANAC58                                         <-----------RAV1(2)------>ZmHOX2a(2)             --------->ANAC58                                         <---------LBD16   <------ZmHOX2a(2)         --------->YAB1                                         <---------ARR11(3)     <---------ARR14(2) <---------DEAR3(1)                  --------->TOE2(3)          --------->ARR11(3)----------->HVH21<- -------->DEAR3(2)         --------->MYB59                    ----------->ARR10<------NtERF2       <- ----ZmHOX2a(1)   <------------CBF   --------->TOE1(3)     <------ZmHOX2a(1)--------->ATERF1(1)------ --AHL20(2)--------->At4g35610 <---------KAN4(2)           ====================================HOX2a_HOX2a --TBP --------->GLK1(2) *TSS<------ZmHOX2a(1)             =====================================HOX2a_HOX2a   ggaccggcgaatcagaagcaaattgttgttaggaataaaccctaaattctgccatggataaggagagatattccaggagccaccgtgacgatcgtgatcg  9779200                                              <---------WRKY18(1)                                             ----------->HVH21                                            <-----------HVH21                                           --------->TGA1a                                           <---------TGA1a                                           <---------O2                                           --------->O2                                          <------NtERF2                                         --------->ABI4(1)                                         ------>NtERF2                                        <---------DEAR3(1)                                        --------->RRTF1(3)                                        --------->DEAR3(1)                                        --------->RAP2.3(2)                                        --------->RAP2.3(3)                                       --------->DEAR4(2)                                       --------->RAP2.3(1)                                       --------->RRTF1(1)                                       --------->ERF1                                       --------->RAP2.6(1)                                       <------NtERF2                                       --------->ATERF1(1)                                       --------->ORA47(2)                         --------->ZAT6                                      <---------ATERF1(1)                        --------->ZAT14          ------>NtERF2               ------>NtERF2                              <------ZmHOX2a(2)         <---------ETT(1)             <---------RAP2.3(1)                      <---------At4g35610 <-------TEIL                        <---------DEAR3(1)                        --------->At4g35610 -------->GLK1(2)                    --------->ANAC46                 <---------ANAC46 -------->CCA1(2)                    --------->ANAC58                <-----------------------TaNAC69(2) =HOX2a_HOX2a                        --------->ANAC58             --------->HSFC1(2)                < ------->ARR14(2)                  <---------ATERF1(1)            <---------HSFC1(2)                < --------ARR14(2)                  <------ZmHOX2a(1)              --------->HSFB2a(1)               - --------GLK1(2)                <------ZmHOX2a(1)                 <---------HSFB2a(1)      <-------TEIL >ZmHOX2a(2)        --------->ANAC46--------->SPL7       <---------YAB1 <---------YAB1    <---------MYB52(1)   agattcgagtcccgaccattctccacaacgtgaaggaggacgccgccgtgaccgcgatgttgattcgaagcgtcgtgattcagatcactaccgttcatcg  9779300                                                        ---------->DOF2                                                    ------>ZmHOX2a(2)                                                  <---------AGP1                                                  --------->ARR11(3)     ----------->HVH21                            <---------ARR14(3)    ------>NtERF2                                 --------->AGP1    <------NtERF2                                 <---------ARR11(3)  --------->ATERF1(1)        =============================HOX2a_HOX2a  <------NtERF2<---------At4g35610                <---------ARR14(2)                          -------  <---------DEAR3(1)         ==============================HOX2a_HOX2a                        ------- ------>NtERF2 --------->At4g35610<---------TOE2(3)<------ZmHOX2a(2)                         -------- <---------LBD16             <------ZmHOX2a(1)    --------->ARR14(2)                        --------- ---------ANAC58          --------->CCA1(2)      <---------GLK1(1)                       <----------ID1 ---------ANAC58        --------->CCA1(2)        --------->GLK1(1)                    --------->CCA1(2) -------->ALFIN1      <---------------------WRI1----------->ARR10                  <---------ZAT6   aggcgcggcgatagggaagatgagagagataggaccaaggatagaagagggagatctgtagagcgaggcgagagagaagggagtagagatagggaaaagc  9779400 -->ANAC58                ---------->DOF2 -->ANAC58             ----------->GT1                    --------->CCA1(2) ->DAG2            <---------TOE2(3)                <------ZmHOX2a(1)    --------->ALFIN1       ----- ->DOF2         --------->ANAC46           <------ZmHOX2a(1)     <------ZmHOX2a(1)          >>>>>>>>>TBF1   atcaccatgagaggtctcacgaaggtagtaaagagaaggaatcgaggagcaagaggaaagatagagaggaagagaatggggctagggatgggaagaagaa  9779500                                             <---------bZIP60(2)                                           <------ZmHOX2a(1)                                         <---------TOE2(3)                                 <-----------RAV1(2)                                         <-------       --------->At4g35610    <------ZmHOX2a(1)         <---------TOE2(3)                    <-------       <---------At4g35610  --------->ALFIN1 --------->ALFIN1          <---------GLK1(2)     -------- ---->GLK1(1)              <------ZmHOX2a(1)<---------ARR14(2)     ---------->DOF2        <---------ARR14(2)   atctaggtttgctgatgggaatggtgagaggaggagcaggtttgaggatgtggctattgaagttgagaacaaagatgctcaagtctctgagggttctggg  9779600  Previous    Next  AGI:  At1g28060.1    Description:  small nuclear ribonucleoprotein family protein / snRNP family protein. similar to RNA splicing factor-related [Arabidopsis thaliana] (TAIR:AT3G55930.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41560.1); contains InterPro domain Pre-mRNA-splicing factor 3 (InterPro:IPR013881) Range:  from: 9779125    to: 9782687    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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