Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                 <---------ARR11(3)               --------->ARR14(2)               --------->ARR11(3)          <-------TEIL               <---------ARR11(3)                   --------->ANAC46     <----- -------->DOF2 --------->GLK1(2)     --------->ARR11(3)             ------>MYB83            --------- --->ANAC58    --------->ARR14(3)    --------->ARR14(2)             ------>MYB46(1)        <---------ARR11(3) --->ANAC58    <---------ARR14(3)    <---------ARR14(2)           <---------MYB59          --------->ARR11(3)   acaaagcctagatgcaaaatcttcagtgcttagatcgaagatacctcgtttagttatccactctgagacctaatacacatcatcaagaacagagatataa  9757600                                                                                      <---------WOX13(1)                                                                                    --------->ATHB12                          ------->TEIL                                             <---------YAB1                         <---------GLK1(2)                               <---------LBD16 ------GT1         <---------YAB1                          <------ZmHOX2a(1)     <---------ANAC58 >CCA1(2)     --------->ATHB12                --------->CCA1(2)--------->ARR11(3)<---------ANAC58----   cgattttttatgagatttattgcgattgaatctctgaatcagaccgagaaacgagagaagaggaagaaattgagacctggagagcgtgattgaatcgctg  9757700                                --------->MYB46(3)                                  <-----------GT1                              --------->ARR14(2)              <---------------------WRI1            -                              <---------ARR14(2)      <---------TOE1(2)         <------ZmHOX2a(1)<--- ------->ARR10       ------>NtERF2              <----------DOF2            --------->ALFIN1<---------   agactcgcagagggaattgatgaggcctcttagaaccgcagggtttaagtctttccctcgtttcagccattcgtccagtggaggagtaaccttcttttgt  9757800                                                          --------->ARR14(2)                                                          <---------ARR14(2)                                                       <---------TOE1(3)                                                    <---------MYB52(1)                                                  <---------TGA1a                                                  --------->TGA1a                                  <-                                                  --------->O2                                     <-                                                  <---------O2                                    ---                                                 <------NtERF2------>NtERF2                    <-----                                                ------>NtERF2<---------ANAC46           <---------HSFB2a(2)                                               <---------DEAR3(1)                       --------->HSFB2a(2)              --------->ATHB12                 ----------->TGA1          --------->DEAR3(2) <--------             <---------ATHB12                  ----------->HVH21   <-----------ARR10    ------>ZmHOX2a(1) -------->ANAC46                               --------->DEAR3(1)  --------->GLK1(2)    --------->LBD16 --------GT1 --------->ICU4                 <---------DEAR3(1)--------->LBD16         ----------->RAV1(2) -DOF2       <---------YAB1             <---------At4g35610 <---------LBD16    --------->At5g28300<--   tcccgtcccaatgccatgattcgactatgtgaagtctcatttagcttcggcgacgttagggttccggcgaatcgaatcgacggtaatctcctggacagga  9757900            <---------ARR11(1)            <---------ARR14(2)         <---------ANAC55(1)         --------->ANAC55(2)                                           <---------ARR11(3)         <---------ANAC46                                           <---------AHL20(2)         <---------ANAC55(2)                                        --------->AHL20(2)         <---------ANAC58                                          --------->AHL20(2)         <---------ANAC58                                          --------->YAB1        <---------------------WRI1                              >>>>>>>>>GT-2   <---------YAB1                                             <---------MYB52(1)   --------------------->WRI1                                 --------->At5g28300   <---------AHL20(2)                                        ----------->GT1 --------RVE1(1)                                             <------MYB46(1)            <---------AHL20(2) --------CCA1(1)    --------->ANAC58                         <------MYB83              --------->AHL20(2) ------>ARR11(3)    --------->ANAC46                        --------->MYB59       >>>>>>>>>GATA-1 -ZmHOX2a(1)--------->ARR14(2)                           --------->ANAC46       ----------->GT1     < ---RAV1(2)<---------CCA1(2)   <---------ICU4        --------->CCA1(2) --------->ARR11(3)   --------- -------ARR11(3)    --------->ANAC58              *TSS<-------TEIL <---------AHL20(2)  <---------AHL20(2)   gattttttattgcgtatcgtccaaggcatttcattatgctctctattctcaagagatacaagtcggtaattaaaatcttatatagataaataaatgaaat  9758000                    <---------ANAC58               <---------ANAC58               <---------ANAC58    <---------ARR11(1)                       --------->AHL20(2)    --------->ARR14(2)                       --------->AHL20(1)    <---------ARR14(2)                       <---------AHL20(2)     --------->AHL20(2)   <---------CCA1(2)----------->GT1     --------->AHL20(2)         --------->ICU4 <---------ANAC58   <---------ANAC46    <---------AHL20(2)    <------MYB83  --------->AHL20(2) <---------ANAC58   <---------ANAC58  ----------->TBP         ----------->GT1            ----------->HVH21 <---------ANAC46   --------->ANAC55(2) ----------->TBP       <------MYB46(1)         --------->GLK1(2) ---------------------WRI1    ------------>CBF           <---------LBD16   <---------MYB52(1) >AHL20(2)  --------->ANAC46 --------->TOE2(3)    --------->AHL20(2)<---------AHL20(2)<-----------ARR10   actgcgtatcgtccaaggcgttgcgttatattctcaatctatataaataaaatgaaatatggggaggtaattaatccattaattctaaaatctgaccaag  9758100                                                            --------------->AGL15                                                            <---------------AGL15                                                            =========================================                                                --------->DAG2                                         ===================================MADS_MADS                                         ----------------->AGL3               ---------->DOF2                                     --------->WRKY38(1)   ----------------->AGL1      <-------------               --------->DAG2        --------->WRKY12      ----------------->AGL2      --------------              ---------->DOF2       <---------MYB52(1)---------->DOF2     --------->TOE2(3)     ----------->GT1             <-------TEIL  ---------->DOF2          --------->ICU4<--------------   ---------->DOF2            --------->At4g35610----------->GT1        <---------ATHB12   aatacaaaagaaaaaaaaaagctatggacatgagcttcgttggcccaaaaaaagttaaaaggccatttagagcaaacattaaaagaatgctacttatggg  9758200                                                                      --------->ALFIN1                                                                    ===========================bZIP_DOF                                                                    --------->TGA1a                                                                    <---------bZIP60(2)                                                                    <---------ANAC46                                                                    --------->O2                                                                    ===========================bZIP_DOF                                                                    <---------O2                                                                    <---------TGA1a                                                              <-----------HVH21                                                             ------->GAMYB                                                             --------->ANAC46                                                             =================MYC_MYB                                                             <---------ATERF1(2)                                                            --------->DEAR3(2)                                                          --------->ARR14(2)                                  <----------DOF2         <---------ARR14(2)                                  ============================================bZIP_DOF   ---------->DOF2               <---------DAG2          ----------->HVH21                  --------- ==MADS_MADS               --------->HSFB2a(2)         --------->HSFB2a(2)          ---------->DOF2 --AGL15                   <---------HSFB2a(2)         --------->ANAC55(2)      <---------ZAT6  ----- ->AGL15              ------>ZmHOX2a(1)                <---------HSFB2a(2) <------MYB46(1)  --------- ---AGL2      <---------ZAT18 <---------ALFIN1         <---------ANAC55(2) <------MYB83     ---------   agaaccaaagtgatagtggtcttcctcttccacaaccttttcatgtgtctctaggttctgtaaccggcagacgtggatggtagtgagaaagaacacgata  9758300                                                 --------->ARR14(2)                                                 <---------ARR14(2)                     --------->GLK1(2)       ----------------->AGL1   --------->At4g35610                      <-----------------AGL1   <---------At4g35610                  -------->ATHB1                                           ----   <---------ZAT2    --------->ARR14(2) <---------ICU4                                         <-----   --------->ZAT2    <---------ARR14(2) --------->ATHB51                                  ----------- >ANAC58            <---------GLK1(2)  <---------YAB1                                     <----------DOF2 ----->DOF2      <-------TEIL          --------->ICU4                               <----------DOF2<- >ANAC46     <---------TOE1(3)         <---------ATHB51                          <-----------GT1----- >ANAC58     <---------TOE2(3) <---------YAB1----------------->AG   --------->YAB1---------->ID1<----   aagcctgctgaatttgaggttcgattctgcattttgatacaattattcccaaattcgaaacaagtttgaatcaaaaacttgtttttctttttctttgatt  9758400     --------->ANAC58     --------->ANAC58 ----->ATHB12                                <----------DOF2 ----WOX13(1)                           --------->ARR11(3)                                <---------AHL20(2) ---------->WRI1                        <---------ARR11(3)                      <-----------GT1  <--- --------WOX13(1)                      <---------CCA1(2)                  <---------TOE2(3)      ---- ---->AHL20(2)                    <---------WRKY38(1)              <---------ANAC46       --------->AHL20(2) -----AHL20(2)          ------------>MYB.PH3(2)     --------->MYB46(3) <----------DOF2   --------->YAB1   aattggcaagccaagaattgagaagaagtgagttagtcaacatatctctttctaaccaagaatgttgttgtgtctttaggttttacatctattaaaatgt  9758500  Previous    Next  AGI:  At1g28000.1    Description:  similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G28020.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69727.1); contains domain TPR-like (SSF48452); contains domain PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN (PTHR10483); contains domain DNA-BINDING PROTEIN (PTHR10483:SF8) Range:  from: 9756661    to: 9757950    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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