Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                       <---------ANAC58                                                                                     --------->ANAC55(2)                                                                                     <---------ANAC58                                                                                   <---------AHL20(2)                                                                                   <-----------GT1                                                                               --------->AHL20(2)                                                                               <---------AHL20(2)                                                                              <---------AHL20(2)                                                                           --------->AHL20(2)                                                                           --------->ATHB51                                                                           <---------ICU4                                                                           <--------ATHB1         <-----------HVH21                                                 <---------AHL20(2) <------   <---------ARR14(2)                              <<<<<<<<<<AtWER        <---------ATHB12  ---------   --------->ARR14(2)                            <-------GAMYB            <---------ATHB51  ---------   ------->TEIL--------->GLK1(2)            <--------P       <----------DOF2  --------->AHL20(1)  <---------CCA1(2)        ---------->ID1  <-------GAMYB    <---------ANAC58  <---------AHL20(1) -------ANAC46<---------GLK1(2)      <-----------RAV1(1)    <---------ANAC58  --------->AHL20(2)   aagtgtatctgggtcatattctgagttttgtcgatttgtttgtggggttgcagttggagattgcttcaagttttcaataatttatttacttgataagcat  9748300                                                                                                  <--                                      ------>MYB83                                              <----                                      ------>MYB46(1)                                           -----                               <---------MYB52(2)                                 --------->At4g35610              ---------->DOF2  --------->MYB46(3)         <---------TOE2(3)       <---------At4g35610       --------->WOX13(1)--------->GLK1(1)            --------->YAB1            --------->HSFB2a(2)    <-----------HVH21  <---------At4g35610       <------ZmHOX2a(2)         <----------DOF2      <---- ---ICU4--------->ANAC58<---------GLK1(2)       <---------ARR11(3)     <---------ANAC58         ----- >ANAC58--------->ANAC58<---------ARR14(2)      --------->ARR11(3)     <---------ANAC58---------->DOF2 >ANAC58--------->AtLEC2--------->ARR14(2)  ---------->DOF2<---------REM1(1)    <---------HSFB2a(2)   tgcaagtgtcaagcacaaaagttgcagattcccacaaaccaaataagaaagatcaattttgatgtagaattttgcttctttttcagaagaaaagtctcag  9748400                                                               --------->TOE2(3)                                                               --------->YAB1                                                              <<<<<<<<<ARR2                                                              <<<<<<<<<ARR1                        --                                                         <-----------GT1                          <--        ----------->HVH21                           --------->TOE2(3)                            <--- --------DOF2 <---------MYB52(1)                   ----------->GT1                               ---- -----ZAT2   <-------GAMYB                    --------->HSFB2a(2)                              ------ ---->ZAT2  <---------MYB46(3)                <---------HSFB2a(2)                 --------->ANAC55(2) -----At4g35610                         <---------ICU4   --------->YAB1           <---------ANAC55(2) ---->At4g35610                   <---------At4g35610   <---------YAB1<----------DOF2  --------->ZAT6   cttcactgattcgaccgttgattcaatttctatggcagttcataattttcagaacgttattacaatcttaagcttttagttaatacttaacactacgttg  9748500                                                               ------>MYB46(1)                                                               ------>MYB83                                                              --------->ANAC46                                                             --------->MYB46(3)                                                             <---------MYB55(2)                                                            --------->ANAC58                                                            --------->ANAC58                      ---                                                           ------>MYB83--------->YAB1             ---                                                          <---------ALFIN1                       <---           <---------YAB1                                --------->DEAR3(1)                     -----   <----------DOF2                      <---------ANAC58 <---------MYB111(2)            ---------->DOF2 ---->ZmHOX2a(2)                        <---------ANAC46 --------->MYB46(3)        --------->ARR14(2) -------At4g35610                       <---------ANAC55(1)------>MYB46(1)         --------->GLK1(2) ------ARR14(2)                         <---------ANAC58 <---------MYB55(2)       <---------GLK1(2) < ----->ARR14(2)                  --------->YAB1         --------->ANAC46       --------->YAB1<------- ----->ARR10                ----------------->AGL3 XXXXXXXXXXXXXXXXXXXX>MIR3440B-5P<---------ARR14(2)   atctgctttgattttgatataagttttggttccaattagatttcgtgtagttttcttcacccacccactactatcagactatcagaatctgaaagtaacc  9748600                         ------->GAMYB                        <---------MYB52(2)                        --------->ANAC58                        --------->ANAC58                      --------->MYB52(1)                                                 ----------->HVH21                   --------->ANAC55(2)                                                   --------->WRKY12                   <---------ANAC55(2)                                              --------->ANAC58 --->MYB46(1)      --------->ANAC46                      <---------TOE2(3)          --------->ANAC58 --->MYB83         --------->ANAC55(1)                 ---------->DOF2              --------->ANAC46 ------ALFIN1      --------->ANAC58              ----------->GT1---------->ID1      --------->ANAC55(2) -->GAMYB          --------->ANAC58             <---------TOE1(3)                  <---------LBD16 ----------DOF2 ------->GAMYB       <----------ID1<------ZmHOX2a(1)               <-----------GT1 ----GT1       <---------ALFIN1 ---------->DOF2 <---------TOE2(3)     <---------At4g35610--------->WRKY38(1)   cactttaaaaattgacaacacacgcaacgaaacacaaagcgccaaaaattaaggaaaaaaaggtttgtcgtaatctgatactattcacgcgatgacctcg  9748700                                                            <-----------GT1               <----------DOF2                        <----------DOF2                 <----------ID1            ---------->ID1                         <-----------GT1                ---------->DOF2         <----------DOF2   <----------DOF2  --------->MYB52(1)                  --------->AtMYB61        <---------ICU4  *TSS       ------>ZmHOX2a(1)  <---------DAG2       --------->HSFB2a(2)     <-   tttttgatcatcttttccttttctatattcttttctcctctgtcccaaacgattcacttttctcaccatctcaatctccagaccaaaagaaacaaaaaat  9748800                                                             <---------ANAC46                                                     --------->WRKY12 <------NtERF2                                                   <-------GAMYB    --------->ETT(1)              <--                                                <---------ANAC46 <---------MYB46(3)               ---           <---------GLK1(2)    <---------YAB1  <---------ANAC58 <-----------RAV1(1)            <----        --------->YAB1 --------->GLK1(1)        <---------ANAC58 --------->MYB52(2)     <------------   <----------DOF2     <---------GLK1(1)    <-------PIF5     <---------ANAC58         --------->ARR14(2) --------GLK1(2)<---------------------WRI1  ------->PIF5     <---------ANAC58         <---------ARR14(2)   ggattctttttcatattcttcgatgaaatccatgttgattcaagctcgtggctcgttgaactcgcgtttgtcggagtttgagccactggttctgctattg  9748900                                               <---------ANAC58                                               <---------ANAC46                                     ------>ZmHOX2a(2)                                    <------ZmHOX2a(2)                                   <-----------ARR10       <---------CCA1(2)           <---------AGP1       ---------->ID1              --------->ARR14(2)                    <---------ANAC58   <---------MYB52(1)              <---------ARR14(2)                ================================ -------ARR14(2)                  <---------ARR14(1)        ---------->DOF2  ---------->ID1  -------- ------>ARR14(2)                  <---------CCA1(2)     --------->ANAC46 <---------ANAC58   --------- -----MYB46(3)                --------->MYB52(1)<-------GAMYB        ---------->DOF2       <---------YAB1 -----AGL3                 <---------GLK1(2)   <---------ANAC58    <------NtERF2     <---------ANAC46   gttccgcttgtctctctgtttctcgctcagattatcggatctgtgtttggcgttgttcacgagaaaggcctcaaagcttgtcttattgggtttatcatgg  9749000             --------->GLK1(2)             <---------ARR14(2)                                                              <-------             --------->ARR11(3)                                                             <--------             --------->ARR14(2)                                                           <----------             <---------ARR11(3)                                                           ===========      --------->O2            <---------ARR11(3)                                <---------ATHB12      <---------O2            --------->GLK1(2)                                 <---------YAB1      --------->TGA1a         <-----------ARR10                                 --------->ICU4   ------>ZmHOX2a(1)     --------->At4g35610                                   <---------TOE2(3) ===============bZIP_DOF --------->LBD16                         <---------ANAC58--------->ATHB12 ->TOE1(2)  <---------GLK1(2)<---------GLK1(2)                   <---------ANAC58<---------ICU4 >YAB1<---------TGA1a  <---------LBD16                          <---------MYB46(3)   <---------AHL20(2)   gactcctcaagtgagaatcttttaatccgcagaatcttattttcttctattccaatatttgtttgatgggtgagagtgactaatgatttttttttttaat  9749100                                                                                         ------>ZmHOX2a(1)                                                                                        =============                                                                                        -------------                                                                                       --------------                          <---------ZAT14                                           --------->KAN4(2)                        <---------GLK1(1)                                          <---------KAN4(1)                    --------->LBD16                                                --------->KAN4(1)                    ------>ZmHOX2a(1)                                            <---------GLK1(2)                   <---------LBD16                                           --------->At4g35610              <---------ICU4                                                 <---------At4g35610 --AHL20(2)   --------->ATHB12                         --------->DAG2    ------->TEIL  <------------- -AHL20(2)   <---------YAB1               <---------At4g35610            --------->ARR14(2) -----AGL15  --------->ICU4   <---------ICU4         ---------->DOF2     <---------ARR14(2) ====================================================================================================   ggaaaatgaaacagaatgattcctggagttcagaattacattgatgctgagaaacaaaaggtgagtttttgtttgaatctgcagattgttcctgtaatgg  9749200  Previous    Next  AGI:  At1g27980.1    Description:  pyridoxal-dependent decarboxylase family protein. Identical to Sphingosine-1-phosphate lyase [Arabidopsis Thaliana] (GB:Q9C509;GB:Q8LEF9); similar to GAD5 (GLUTAMATE DECARBOXYLASE 5), calmodulin binding [Arabidopsis thaliana] (TAIR:AT3G17760.1); similar to unknown [Picea sitchensis] (GB:ABK24262.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41624.1); similar to sphingosine-1-phosphate lyase [Oryza sativa (japonica cultivar-group)] (GB:AAX89367.1); contains InterPro domain Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424); contains InterPro domain Pyridoxal phosphate-dependent transferase, major reg Range:  from: 9748724    to: 9752756    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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