Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                          --------->YAB1                                                                                       <---------YAB1                                                         <---------AHL20(2)           --------->AHL20(1)                                                        <---------AHL20(2)            <---------AHL20(2)                          --------->At5g28300       <---------YAB1                    --------->AHL20(2)                          <-------GAMYB          <---------YAB1                     <---------YAB1                         ----------->GT1      --------->ICU4                     <---------AHL20(2)                         <---------MYB46(3)   <---------YAB1                     --------->AHL20(1)                        <------NtERF2         <---------AHL20(2)                 --------->AHL20(2)                       <---------LBD16      <---------RVE1(1)                    <---------AHL20(1)                       xxxxxxxxxxxxxxxx>smallRNA(s)<---------AHL20(1)       --------->AHL20(2) ---->AHL20(2)         ------>NtERF2        <---------CCA1(1)              --------->AHL20(2) -----AHL20(1)         --------->LBD16     --------->ARR14(2)          <---------AHL20(2) -----AHL20(2)        <xxxxxxxxxxxxxxxxsmallRNA(s) <---------AHL20(2)  --------->AHL20(2) ---->AHL20(1)       <---------RAP2.6(2)   --------->ARR11(3)      <---------AHL20(2) <---------AHL20(1) --->YAB1       <---------MYB46(3)         <---------ARR11(3)      --------->AHL20(2)--------->YAB1 --->AHL20(2)   --------->ATHB12           <---------ARR14(2)<-----------GT1<---------AHL20(2)   tattactgaaggtgtaaatggttgccgcggttaaatctgtttgcagatattattattttttatttacaatttataaattaaaatttattataatatgaac  9746400                                                                                                    x                                                                                                    <                                                                                                    -                                                                                         xxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                     <---------AHL20(2)                                                                                     --------->AHL20(1)                                                                                     --------->AHL20(2)                                                                                  --------->YAB1    <                                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)   <x                                                            <------MYB46(1)   ------>ZmHOX2a(1)   ---                       --------->DEAR3(1)              --------->DAG2    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                   --------->HSFB2a(2)                ---------->DOF2    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       <---------AHL20(2)      --------->YAB1     <---------AHL20(2)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)      --------->AHL20(2)      <---------ATHB12   --------->AHL20(2)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      <---------AHL20(2)      <------ZmHOX2a(2)--------->TOE2(3)xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<xxx  >>>>>>>>>>GT-3b  <---------HSFB2a(2)      <-----------GT1 <------MYB83xxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)   taagaaaaataaatgaaatttctcgcagaccgatcataaaccgattttacattaaataaagttggtttacattgtatgtcctaaaaataaaatgaactaa  9746500                          <xxxxxxxxxxxxxxxxsmallRNA(s)                        <xxxxxxxxxxxxxxxxsmallRNA(s)                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                      <---------At5g28300                      -------->P   ------>MYB46(1)                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                  <---------ARR14(2)     <----------DOF2                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)              xxxxxxxxxxxxxxxx>smallRNA(i)              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)            <-----------GT1        ------>MYB83          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)          xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     <---------ANAC46 xxxxxxxxxxxxxxxx>smallRNA(s)   --------->MYB52(1)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   ------>NtERF2 <---------CCA1(2) -------->P  --------->WRKY12------->TEIL     --------->ZAT14  ----------->HVH21<xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                           <---  ----------->TGA1--------->ARR14(2)<---------ALFIN1        <---------YAB1                       <--- <xxxxxxxxxxxxxxxxsmallRNA(s)    --------->AtMYB61         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   ---- xxxxxxxxxxxxxxx>smallRNA(i)    --------->MYB46(3)         <---------AHL20(2)                 ------- xxxxxxxxxxxxxxxxsmallRNA(s) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                           -------- -------->At4g35610xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <---------AHL20(1)                <------- xxxxxxxxxxx>smallRNA(i2)<---------At4g35610          --------->AHL20(1)                 --------->AHL20(2) xx>smallRNA(i)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <---------AHL20(1)                <---------YAB1 ---------At4g35610<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <---------YAB1              <---------AHL20(2) xxxxxxxxxxxxxxxsmallRNA(s)xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ------>MYB46(3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  --------->AHL20(2)            <---------WOX13(1) xxxxxxxxxxxxxsmallRNA(s)--------->At4g35610          <---------AHL20(2)         <---------YAB1  ----   accgctgacggatttatctgtatctaccgctgcaacctacactctttataaacaaatttattatttttgacacatcttataatctaattgattatttaaa  9746600         <---------AHL20(2)        --------->AHL20(2)                                                              --------->ATHB51     <----------DOF2                           --------->AHL20(1)                       --------->AHL20(2)  --------->ARR11(3)                           <---------AHL20(2)                       --------->ATHB12  <---------ARR11(3)                          --------->AHL20(2)                       <---------AHL20(2) ------AHL20(2)                               <---------AHL20(2)              --------->CCA1(2) ------AHL20(1)                              <---------AHL20(2)              --------->ARR11(3) ----->AHL20(2)                            <---------ICU4                    <---------ARR11(3) -->AHL20(2)                              --------->ICU4           --------->TOE2(3)<---------AHL20(2) ->AHL20(2)                      --------->AHL20(2)                --------->TOE1(3)--------->AHL20(2) --AHL20(2)<---------GLK1(2)     <---------AHL20(2)<-----------RAV1(1)   ---------->DOF2<---------AHL20(2) ----->AHL20(1)        --------->ZAT18   <---------AHL20(2)   <---------MYB52(2)   --------->AHL20(2)   atattatcttttaaattctctaaatcgcactatattaaaatataaaaattattttgttggagaaacaaaccttaaaaaagatatataaaattatttgttc  9746700                                  ----------->GT1                                  <----------ID1                                          -----------                         ------------------------>ANAC81                             --------->ANAC58                   <---------AHL20(2)                                        <---------ANAC46             ----------->GT1  ---------->DOF2                              <-----------HVH21      ----------->GT1<---------TOE2(3)                                   --------->At4g35610      --------->TOE2(3) ---------->DOF2                             --------->DAG2   --------->ANAC58     ----------->GT1---------->DOF2              <------------CBF  ---------->DOF2 --------->CCA1(2) --------->AHL20(2)--------->AHL20(2)      <----------ID1  ---------->DOF2--------->DEAR3(1)      *TSS   aaaaaaaatgttaaatagaaattaaagaaagaaaaagagaaaaaaaaaacaaattgagaagaaaagaagaaaagcagcgtcgtagagacgcgaagttaaa  9746800                                                                <---------At4g35610                                                                --------->At4g35610                                                                --------->ZAT2   --------->ATHB12                                                                <---------ZAT2   <---------ICU4                                                    ------>ZmHOX2a(1)           <---------YAB1                                      <---------ANAC58         <-----------RAV1(1) --------->At4g35610                 ----------->GT1      <---------ANAC58       ------>ZmHOX2a(1)--------->YAB1   <-----------HVH21     --------->AtMYB61      --------->ARR14(2) --------->At4g35610 >GT1       --------->AHL20(2)   <----------DOF2<---------ARR14(2) <---------At4g35610   <------NtERF2   caacaggtcagagaataaatagaaaaaccaaaaccctttagcgtctcccaaatcctctcaatcctctgctgctcaatctctcatcatcggcatcgctctc  9746900                                                                                  <---------DEAR3(2)                                                                               <-----------HVH21                                                                               --------->REM1(2)                                                                              --------->ALFIN1                                                                            ------->GAMYB                                                                          ------>MYB83                                                                          ------>MYB46(1)                      ------>NtERF2                                       -------->P                     --------->ANAC46                                    --------->MYB55(1)                   ------>ZmHOX2a(2)                                     --------->MYB52(1)                  <------ZmHOX2a(2)                                     --------->MYB46(3)                 --------->ARR14(2)                                     <---------MYB111(1)                 ------->TEIL ------->TEIL                              <---------MYB55(2)                 <---------ARR14(2)                                     <---------MYB46(2)            --------->At4g35610                                         --------->AtMYB61            <---------At4g35610                       <---------YAB1    <---------MYB111(2)          <-----------RAV1(2)<---------CCA1(2)   <---------ICU4       ------>NtERF2                 -   tctaaaaatgtctcagatggatcccgacgctgtatctaaggccttcgtcgaacattactattccaccttcgacaccaaccgtgtcggtctcgctggtctc  9747000                                                                                                 <---                                                                                              -------                                       --------->TOE1(2)                                      -------                                     <------ZmHOX2a(2)                                        -------                                     --------->CCA1(2)                                     --------->ZAT14      <---------HSFC1(2)            --------->ARR11(3)                                     <---------ZAT18      --------->HSFB2a(1)           <---------ARR11(3)                                --------->ZAT2      <---------HSFB2a(1)           --------->ARR14(2)                                <---------ZAT2      --------->HSFC1(2)            <---------ARR14(2)                                <---------At4g35610      <---------At4g35610           --------->AGP1               --------->ZAT2 <----------DOF2 -----   <------ZmHOX2a(1)            ---------->DOF2                  --------->At4g35610--------->HSFB2a(2) -------->YAB1             ----------->GT1     <---------ZAT14   <---------At4g35610<---------HSFB2a(2)   tatcaggaagcttctatgctcaccttcgaaggtcaaaagatccaaggagtccagagcatcgtcgctaagctcacctctcttcctttccagcagtgcaagc  9747100                                                                                           --------->ANAC58                <---------WOX13(1)                                              --------->LBD16               <---------ANAC58                                          --------->At4g35610       <---------ALFIN1                   <---------MYB52(1)             --------->ZAT2    --------->ANAC46 --------HVH21 <---------ANAC58          --------->LBD16       <---------MYB52(1)<------NtERF2 -->ANAC46    --------->ATHB12          --------->HSFB2a(2)   --------->LBD16  --------->DEAR3(1) -->ANAC58   --------->WRKY38(1)       <---------LBD16      <---------LBD16   <---------LBD16 -->ANAC58  <---------MYB52(1)    ------>ZmHOX2a(1)    <---------ANAC58  <---------ZAT2    --------->ANAC58 ---->YAB1 <-------GAMYB  ----------->RAV1(2)          <---------ANAC58  <---------At4g35610   atcacatctccaccgttgattgtcagccttctggtcctgcttccggtatgctcgttttcgtctccggtaatctccagctcgccggagaagaacacgctct  9747200                                                                          <---------ANAC58                                              ------>ZmHOX2a(2)           <---------ANAC58                                         <---------WOX13(1)               <---------ANAC46                       <----------DOF2<---------YAB1  <------------------------ANAC81           -----       <-----------RAV1(2)        <---------GLK1(1)<----------DOF2  --------->ATHB12 ----------->GT1   caagttcagccaggtatctctctctctttctcttcgatttccgattgatctatctttgtttggatttgtttgatttgcttgtgagtttagttattagatc  9747300  Previous    Next  AGI:  At1g27970.1    Description:  NTF2B (NUCLEAR TRANSPORT FACTOR 2B); Ran GTPase binding / protein transporter. Identical to Nuclear transport factor 2 (NTF2) [Arabidopsis Thaliana] (GB:Q9C7F5;GB:Q1H566); similar to NTF2A (NUCLEAR TRANSPORT FACTOR 2A), Ran GTPase binding / protein transporter [Arabidopsis thaliana] (TAIR:AT1G27310.1); similar to putative nuclear transport factor 2 [Brassica rapa] (GB:ABL97965.1); contains InterPro domain Nuclear transport factor 2; (InterPro:IPR002075) Range:  from: 9746798    to: 9748033    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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