Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                     <---------ANAC58                                                             --------->GLK1(2)                                                            --------->ARR14(2)                                                            <---------GLK1(2)                                                            --------->ARR11(3)                                                            <---------ARR14(2)                                                            <---------ARR11(3)                                                           --------->HSFB2a(1)                                                           <---------HSFB2a(1)                                                           <---------HSFC1(2)                        <---------YAB1                     --------->HSFC1(2)            --------->At4g35610                           ----------->ARR10  ------->GAMYB<-------TEIL                         ---------->DOF2<---------ANAC58      --------->YAB1 <---------MYB52(2)   --------->YAB1      XXXXXXXXXXXXXXXXXXX>MIR158B     --------->ANAC58 --------->MYB46(3)   <---------ICU4      XXXXXXXXXXXXXXXXXXX>MIR158A     --------->ANAC58   tcaacaaacaaattagatgcaaaatcatgagaataccaaaaccccaaatatcaacaaaggaagattcttgtttgtcaagaaacagagggaatcagaacac  9724300                                  --------->AHL20(2)                                  <---------AHL20(2)                                 <---------WOX13(1)                       --------->ANAC58                       --------->ANAC58                       --------->ANAC46                --------->LBD16                <---------------AGL15            --------->ARR14(2)                =====================================================================================                --------------->AGL15            <---------ARR14(2)         --------->AHL20(2)   <---------YAB1--------->ANAC58        --------->AHL20(2)--------->WOX13(1)--------->ANAC58                            <---------ANAC46      --------->YAB1 ---------->DOF2     ------>ZmHOX2a(1)          --------->AHL20(2)  ----------->GT1   aagaacaaaaataaaaaacccataaaagcaatctgattaattcctccagcaaatacccagataaacaaaaaaaaatccattttttgaatcgggtgaaaaa  9724400                  --------->AHL20(2)              --------------->AGL15             ----------------->AGL3            ------->TEIL                        <---------REM1(1)         --------->ANAC46                       --------->ALFIN1         --------->ANAC58                     <------MYB83         --------->ANAC58                     <------MYB46(1)         <---------ANAC58                    --------->MYB111(1)         <---------ANAC55(2)                 --------->MYB46(2)         --------->ANAC55(2)                 <---------AtMYB61         <---------ANAC58                    --------->MYB111(2)        --------------->AtSPL3               --------->MYB55(2)        <-------TEIL                         <---------MYB46(3)      --------->TOE1(2)                     <---------MYB55(1)                      ---------->DOF2      --------->TOE2(2)                     <--------P                            --------->YAB1     <---------HSFB2a(1)                   <---------MYB52(1)             --------->YAB1          ---  <------ZmHOX2a(1)      ------->TEIL ------->TEIL   <---------ZAT6      <------ZmHOX2a(2)     ------ =============================MADS_MADS<---------At4g35610  ---------->DOF2     ---------------------   cagaggaacatacgtaccaaaaaaatgaacctataatctgcatctggtaggtgtagacttaataaagagaagtcgatcacaaaatcaaaagaagagcatc  9724500                 <---------AHL20(2)                <---------WOX13(1)              -------->HAHB4              --------->ATHB12              <---------ICU4                     --------->MYB111(1)             --------->ICU4      <---------At4g35610             <---------YAB1<---------ANAC58      --------->MYB52(2)        --------->YAB1     <---------ANAC58     <--------P    --------->ICU4<---------AHL20(2) <-----------------AGL2 ------>At4g35610--------->AHL20(2)--------->GLK1(2)                    <-----------GT1    <---------ICU4 --->At4g35610--------->YAB1     <---------GLK1(1)                    <---------WOX13(1)  <---------ATHB12 --->ANAC81--------->YAB1  <---------ANAC46<---------LBD16     <---------GLK1(1)   --------->LBD16   agaggcattagtataatgattaatttgttccttggagatgctgtttctgggtagtttctacgagggtctctgatttacaagtttccgagctaatcaaggc  9724600                                                                                           <---------AHL20(2)                                                                                        --------->AHL20(1)                                                                                        --------->AHL20(2)                                                                                        <---------AHL20(1)                                                                              --------->YAB1                                                                             --------->AHL20(2)                                                                       ----------->GT1 <---------AHL20(2)                --------->YAB1                                <---------RVE1(1)    <---------AHL20(2)             ----------->RAV1(1)                              <---------CCA1(1)    --------->AHL20(2)         <------ZmHOX2a(2)                   <---------ANAC46<---------ARR11(3)  --------->YAB1<-----        <---------ARR14(2)        --------->ALFIN1           --------->ARR11(3)--------->AHL20(2)----   aaaatttgtcgatcccaacaataagagagaagagaggtttggctatggctgataccgaatggagattttttgaaggaaaataaaaataaatattttagtg  9724700                                                                                      --------->ARR14(2)                                                                                      <---------ARR14(2)                                                                                      <---------GLK1(2)                                                                                 ----------->RAV1(1)                                                                                 --------->MYB52(1)                                                                                --------->ANAC46                                                                              --------->ANAC46                                                                              --------->ANAC58                          --------->ANAC58                                    --------->ANAC58                 --------->ARR14(2)                                        --------->ZAT18                 <---------ARR14(2)                                        <---------ZAT18                 --------->ARR11(3)              <---------ANAC58          --------->ZAT14                 <---------ARR11(3)              <---------ANAC46          <---------ZAT14                 <-----------ARR10               <---------ANAC58       --------->ANAC58 *TSS---------->DOF2      --------->ANAC58    --------->TOE1(2)         --------->ANAC58 ----ZAT6  <------ZmHOX2a(1)         <----------ID1       <------------CBF <-------TEIL ------>DOF2   ----------->ARR10   ---------->DOF2     ------------>CBF<---------TOE1(2)   aaagaaaaaaagaggagaagttcttctcaagtcaaaataaagccaaaacttgcgagtggcaattgcaaggtcgcaagtacacacaacagatttgttttgt  9724800                                                      --------->WOX13(1)                                                      --------->YAB1                                                    <---------YAB1                                                   --------->TOE2(3)                                                  <---------ICU4                                                  <--------HAHB4                                                  --------->ATHB12                <----------DOF2                   --------->YAB1         --------->YAB1                       <---------AHL20(2)   <---------AHL20(2)         <---------ICU4              <---------MYB52(1)    --------->At4g35610<---------ATHB12        --------->ICU4          --------->GLK1(2)<---------YAB1   <---------AHL20(2)        <--------     --------->AHL20(2)        <---------GLK1(2) <---------ATHB12 <---------AHL20(1)     <---------ICU4     <---------AHL20(2)        --------->ARR11(3)--------->ICU4   --------->AHL20(2)   --------->ANAC55(2)   tttgtttttaattatgttctttgtaagaaaaaagattctgttatttgtttaatcattaatcaactcaattaatttttcaaatgatttttaagtattacta  9724900                                           ----------->GT1                                      --------->YAB1                                      <---------AHL20(2)                                      <---------ICU4                                      -------->ATHB1                                      --------->ATHB51                                      <--------HAHB4                 <---------ICU4                                      -------->HAHB4                 --------->ATHB51                                     <---------ATHB51               --------->ICU4                                     <---------YAB1                 <---------YAB1                                     --------->ICU4          <---------ARR11(3)                         <------ZmHOX2a(1) <---------TOE2(3) <---------ARR14(2)                   <--------HAHB4 <---------AHL20(2)         --------->ARR11(3)                  --------->ICU4  --------->AHL20(2)         --------->ARR14(2)          ----------->GT1                  <---------YAB1  <---------YAB1---------->DOF2   --------->YAB1<---------ANAC58              ------->GAMYB      --------->AHL20(2)          <---------GLK1(2)  <---------ANAC58 ---GT1    --------->MYB52(1)    <---------AHL20(2)        ----------->ARR10    <---------ANAC46   gatttgaatttagcaacggtattattaggagacattttaattattaagaaaaaagcttcttaagatactcataatttcgatttcttggatgcgataaaaa  9725000          <---------REM1(1)          <-----------RAV1(1)          --------->ALFIN1     <---------ICU4    --------->ICU4                           ----------->GT1    <---------YAB1                           <---------ANAC46               <xxxxxxxxxxxxxxxxsmallRNA(s)  --------->YAB1                           --------->ZAT14               <XXXXXXXXXXXXXXXXXXXXXXXMIR163 <---------YAB1       ---------->DOF2      <---------ZAT14        <---------MYB52(1)   catatcattatggtgttgcccgtttaaagtcaaaatgcaatgtagtttagtgaatcaaattttgttctgttttgtttccaagtcttcttcaattgaaact  9725100                                                     <---------ANAC58                <-----------GT1                      <---------ANAC58            --------->AHL20(2)                       <---------ANAC46            --------->ATHB51                      <---------RAP2.6(2)           <---------YAB1                     <---------GLK1(1)           --------->ICU4                    <---------GLK1(2)                    --------->ETT(2)         --------->YAB1             <---------------AGL15                         <---------ETT(2)         <---------ICU4             --------------->AGL15                         <---------WRKY38(1)         <--------HAHB4            <-----------------AGL3                     <---------AtMYB61        <---------YAB1             <-----------------AGL2                <----------DOF2   gaaactgttgatcattatttaccaaaaaacatttcattctaatattggattttcggcttgtatactatatagtttcttttttggtcgactgatagttgaa  9725200  Previous    Next  AGI:  At1g27910.1    Description:  U-box domain-containing protein. similar to armadillo/beta-catenin repeat family protein / U-box domain-containing family protein [Arabidopsis thaliana] (TAIR:AT1G67530.1); similar to armadillo/beta-catenin repeat family protein / U-box domain-containing family protein [Arabidopsis thaliana] (TAIR:AT1G24330.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46633.1); similar to B1065G12.5 [Oryza sativa (japonica cultivar-group)] (GB:BAB90523.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN79836.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024); contains InterPro domain Zinc finger, RING/FYVE/PHD-ty Range:  from: 9720723    to: 9724701    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version