Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                           <---------DEAR3(1)                                                        --------->ALFIN1                                                      <---------O2                                                      ===================MYC_MYB                                                      --------->TGA1a                                                      <---------TGA1a                                                  ----------->RAV1(1)                                                --------->At4g35610                                                <------NtERF2 <----------CDC5                                               --------->RAP2.6(2)                 --------->LBD16                 --------->MYB52(1)        --------->ANAC58  <---------At4g35610  --------->DEAR3(1)               <---------MYB52(2)        --------->MYB52(1)  --------->ZAT2      <------NtERF2               --------->MYB46(3)       --------->ARR14(2)   <---------ZAT2      <---------LBD16          <---------YAB1                <---------ARR14(2)   --------->At4g35610 --------->ATERF1(1)        <---------ICU4                ------->GAMYB <---------ALFIN1            <---------RAP2.3(1)       <---------YAB1                 ==========================MYC_MYB         ------>NtERF2       --------->ICU4                --------->ANAC58 --------->O2             <---------bZIP60(1)     <---------ICU4          ----------->RAV1(2)<---------At4g35610----------->HVH21   <----------DOF2     --------->YAB1        <-----------GT1 --------->ANAC58<------NtERF2     <---------TGA2(2)    --------->ICU4 --------->ANAC58  --------->ANAC58 ============================================bZIP_DOF    <---------ATHB12----------->GT1 --------->At4g35610<-----------HVH21    ----------->HVH21 <------ZmHOX2a(1) --------->ANAC58--------->MYB52(1) --------->ANAC46      ----------->TGA1  <------   tgaggaatcatgatgaaacaaacggaaaataacctggcaacggaaacggcagcaacacgtcggggctgagtgatggcgatgacgccggactttgtgtaac  9720200                                                                                              =======                                                            <---------MYB111(1)               ------>ZmHOX2a(2)                                       <---------ARR14(2)   --------->MYB46(3)               <------ZmHOX2a(2)                          --------->ZAT14             <---------ATHB12                      <--------                        --------------->AtSPL8        <---------ATHB51                      ---------                     --------->ZAT2    --------->ARR14(2) <-----------GT1                   ---------                     <---------At4g35610     --------->ARR14(2)                             <--------                     --------->At4g35610     <---------ARR14(2)                             <--------                     <---------ZAT2 <---------HSFB2a(2)<---------ICU4                       ---------           --------->ARR14(2)       --------->HSFB2a(2)--------->YAB1 --------->GLK1(1)     <--------           <---------ARR14(2)      ----------------->AGL1<---------YAB1        <---------ALFIN1 -----GT1  --------->GLK1(2)<---------ZAT14 <---------MYB52(1)-------->P      <---------ZAT14========   catgtcgatgaagtatctgagagagctgagtactcttcccagaaccggtttctccaattataactaccactgaattcttctccactgtttccacgatctt  9720300                        --------->ANAC58                        --------->ANAC58                       <-------TEIL                    --------->HSFB2a(1)                    <---------HSFC1(2)                    <---------HSFB2a(1) ==================HOX2a_HOX2a -ARR11(3)          <------MYB83                         <---------ATHB12 >ARR11(3)          <------MYB46(1)                     ------>MYB83 >ARR14(3)          --------->HSFC1(2)                  ------>MYB46(1) -ARR14(3)     ------>ZmHOX2a(2)                    ------->TEIL                ---------->DOF2 ---ARR10    <---------ARR14(2)             --------->ANAC46                  --------->ANAC46 >ARR14(2)   --------->ARR14(2)             --------->ANAC58               <---------ETT(2) -ARR14(2)  <------ZmHOX2a(1)<---------CCA1(2) ---------->DOF2        <---------ATHB12 ==================HOX2a_HOX2a              --------->ANAC58      <---------At4g35610          ------   ctcttcaaattgaaggatcggaaggttcgccatatcgcagagaaacactcaaagaacctatcaagttcagcaatcgatcgacgaaaggaaactgtaacct  9720400                                                             ------>NtERF2                          <          <---------TOE2(3)                             --------->SPL7                             --          <---------TOE1(2)          ------->GAMYB     --------->MYB52(1)                          --      <---------At4g35610     <---------ZAT14        <---------MYB52(2)                            --  --------->ARR14(2)     --------->RVE1(1)           --------->MYB46(3)                           ---  <---------ARR14(2)    --------->ARR11(3)         ------>NtERF2       <-----------GT1           ----  <---------ARR11(3)    <---------ARR11(3)<-------TEIL<---------SPL7  <-------TEIL  --------->TOE2(3) --->TOE1(2)  <-------TEIL    --------->ZAT14     --------->DEAR3(1)<---------GLK1(2)           -----   gcaagttctgcttaggttcagtctaaaatctctgtacaacgaaattcattctccgacgaacgacgcgatagattcacaatacagaaccctaatcgctcac  9720500          --------->GLK1(1)      <---------HSFC1(1)                                <-----------ARR10      <---------HSFB2a(2)                               <---------ARR11(3)      --------->HSFB2a(2)                               --------->ARR14(2)      --------->HSFC1(1)                                --------->ARR11(3) ---------ALFIN1                                        --------->GLK1(2) ------>P <---------GLK1(1)                     <---------ANAC58 ---->MYB83  --------->TOE2(3)                  <---------ANAC58 ---->MYB46(1)                       ------>ZmHOX2a(1)  --------->ARR14(3) -------->RAV1(1)       ----------->RAV1(1)<----------DOF2                                        --- ----->AtMYB61         --------->MYB46(3) <---------DAG2<---------ARR14(3)        ----------->GT1---- ---->MYB46(3)     <---------ATHB12 --------->TOE2(3)  *TSS             <---------AHL20(2)-----------   caacacttcgagaaatctcaaatcaacaacacatttttcctaaaccttttccgttcaaaatcttctctgtatattatatgaaaatcgaaaaatagaaaat  9720600                                                                                                 ----                                                                                                 <---                                                                                               ------                                                                                      <-----------ARR10                                                                                      ------->TEIL                                                                                      <---------ARR11(1)                           <---------ZAT18                                            <---------ARR14(2)                           <---------ZAT14                                           <---------CCA1(2)                           --------->ZAT18                                         <---------ANAC58                 --------->ANAC58                        <---------ARR14(2)        <---------ANAC55(2)                 --------->ANAC58                        --------->ARR14(2)        --------->ANAC55(2)             --------->ANAC58                         <---------DEAR3(1)           <---------ANAC46   ----------->GT1         --------->ZAT14           --------->At4g35610           <---------ANAC58 <----------ID1  --------->ANAC46                    <---------At4g35610       ------->TEIL    <----- ------>DAG2 --------->ANAC46                      ---------->CDC5     <----------DOF2--------->ARR14(2) ------>DOF2 --------->ANAC58------->TEIL    <----------DOF2       <---------CCA1(2) <---------ARR14(1) >GT1       --------->WOX13(1)      --------->ARR11(3)<---------RAP2.3(2)   <---------YAB1  ---------   aaagcgagaaaaatcaagcaagccacaagtgtacttaagaccctctcctttgttcagcggctcttggtcttatcttttatgaatttcgtatctcgtcctt  9720700                                                               ------>MYB46(1)                                                               ------>MYB83                                                             --------->MYB46(3)                                                             <---------MYB55(2)                             <---------ARR11(3)             --------->ANAC46                             <---------AHL20(1)             --------->ANAC58    <---------YAB1           --------->AHL20(1)           <---------ALFIN1 <---------AHL20(2)   ----------->GT1                     --------->REM1(1) ----->AHL20(2) <----------DOF2                          ------>MYB46(1) ------AHL20(2)<---------ANAC46                          -------->P >ZmHOX2a(1)   <---------ANAC58             ----------->GT1 --------->ANAC58 -----DOF2     <---------ANAC58     <---------YAB1       ------>MYB83 <-------TEIL<-----------GT1 ->ID1  ---------->DOF2      --------->ARR11(3)        --------->AtMYB61  ----------->GT1   taatttatgacaaagttgctttcagagtaaaaatatttctcattagtagttataaaacctacacccaacaagtacattgtaatttgacaatttgtataac  9720800                                                    <----------DOF2                                                 <-----------GT1                      <-----------GT1        <----------DOF2                   --------->CCA1(2)                  --------->CCA1(2)     <---------HSFC1(2)                    --------->ARR11(3)            --------->TOE1(2)           --------->HSFC1(2)                    <---------ARR11(3)         <---------ARR11(3)            --------->ANAC58                  --------->DAG2       -------         --------->ARR11(3)            --------->ANAC58                 ---------->DOF2      --------   cagaacccaaaaatccttggatataaactacatacctatacaagcttcttttctctttacctccaagactttcaaaaagagatataagtcttgagatggg  9720900                                  <---------ICU4                                  ---------->DOF2                         --------->MYB52(1)                         ---------->DOF2                                            ---------->DOF2    --------------->AtSPL8       --------->ICU4  --------->ZAT6           <----------DOF2   ---------->DOF2     <---------MYB52(2)        <---------ALFIN1         <---------DAG2 ---->GT1         --------->TOE2(3)             --------->ZAT14    <---------ARR11(3)  <---------At4g35610 ->ALFIN1    <----------DOF2----------->GT1     <---------ZAT14    --------->ARR11(3)  --------->At4g35610   gaaaacaaagtacaactttacatcaactaaaggtaataaagacatgactcaacactggtaaactgagaagctcttacttttccatagaaagctgaatgct  9721000                                                                      <---------ARR14(2)                                                              --------->MYB52(1)                                                           --------->ANAC58                                                           --------->ANAC58         <---------ANAC58                                   <---------MYB52(1) ====================RAV       <---------ANAC46                               --------->ZAT14     <---------At4g35610--------->ARR14(2)                               <---------ZAT14  <---------At5g28300   --------->GLK1(2)                           --------->ZAT6       ---------->DOF2  ------->GAMYB <---------LBD16                       <---------WOX13(1)    <-----------HVH21----------->RAV1(1)   <---------ANAC58             --------->HSFB2a(2)   --------->ARR14(2) ----------->RAV1(2)     ------>ZmHOX2a(1)     -             <---------HSFB2a(2)   <---------ARR14(2) <---------At4g35610     <---------LBD16       <         <----------DOF2 <-----------GT1---------->ID1--------->At4g35610 <-----------HVH21        <-   cttcccattttctttctcgaggctgatttacactgcggttttgtctctgttacagcggctgaagcaacagagaatccgtcctcggggcttgtgacttctg  9721100  Previous    Next  AGI:  At1g27900.1    Description:  RNA helicase, putative. similar to ATP-dependent RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT3G26560.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN63193.1); similar to Helicase associated domain family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA92900.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO46643.1); contains InterPro domain Region of unknown function DUF1605 (InterPro:IPR011709); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domain AAA+ ATPase, core; (InterPro:IPR003593); contains InterPro domain DEAD-like helic Range:  from: 9715440    to: 9720555    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g27910.1    Description:  U-box domain-containing protein. similar to armadillo/beta-catenin repeat family protein / U-box domain-containing family protein [Arabidopsis thaliana] (TAIR:AT1G67530.1); similar to armadillo/beta-catenin repeat family protein / U-box domain-containing family protein [Arabidopsis thaliana] (TAIR:AT1G24330.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46633.1); similar to B1065G12.5 [Oryza sativa (japonica cultivar-group)] (GB:BAB90523.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN79836.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024); contains InterPro domain Zinc finger, RING/FYVE/PHD-ty Range:  from: 9720723    to: 9724701    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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