Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                        <------------MYB.PH3(1)                                                    --------->MYB52(1)                                                    <---------DOF5.7(2)                                                   ----------->HVH21                          <---------ANAC46        <---------MYB52(1)                   --------->ANAC58                          --------->O2            --------->DOF5.7(2)                --------->CCA1(2)                          <---------O2           --------->LBD16              <---------DOF5.7(2)                 ----------->HVH21      ------>ZmHOX2a(1)                   --------->DOF5.7(2)              --------->At4g35610      --------->TOE2(3)                   <----------DOF2      <----        ---------->DOF2   ----------->GT1      <---------LBD16      <---------MYB52(1) --------->ANAC58   aaactttcccaaaagctgctcgacggtctcgtgaaactcttccttagtctccggtaacggtttccctcccgttaagcctttaacgagataagcattgtcg  9714600                                                                                                    <                                                                                                   --                                                                                                   <-                               <---------ANAC58                                                    --                           <----------DOF2                                                   ------>ZmHOX2a(1)                         <---------YAB1         --------->GLK1(2)                            ========                --------->ANAC58                --------->ARR14(2)                           ========                --------->ANAC46                <---------ARR14(2)                        ------>MYB46(1)                --------->ANAC58    ------>ZmHOX2a(1)   ---------->DOF2                   ------>MYB83 -----SPL7    <-----------GT1  <---------ANAC58<---------GLK1(2) ---------->DOF2      <---------ARR11(3)   taagagccttgaaaattcacccaagttatctttccgtccttctccttgagaatctgagaaaagtctctaaagaattcttcgattccaataccttcctctc  9714700      ----------------->AGL1 ------>ZmHOX2a(2) ------ZmHOX2a(2)                 --------->ANAC58                         <---------GLK1(1) ------->ARR14(2)                 --------->ANAC58                    <-------GAMYB             ----- --------ARR14(2)               ---------->DOF2                      <---------MYB46(3)         <---- ------->ARR11(3)       <----------DOF2                              --------->MYB52(2)        <----- =======HOX2a_HOX2a    <---------ANAC58                             <-------TEIL              <------ ======HOX2a_HOX2a     <---------ANAC58   ------->TEIL           <---------YAB1----------->HVH21<----   cgatcttgtccagattgagaccattgcttttgagaaaagctatggacttatcgtttttgaagcacttatgttcgttgaaatctgacaagtttatttccca  9714800                                     ------>MYB83                                     ------>MYB46(1)       --------->ETT(2)                                     --------->MYB52(1)    <---------ZAT18 ---->LBD16                <---------ANAC58           <-------GAMYB -----TOE2(2)              ----------->GT1           --------->ALFIN1                         ------>ZmHOX2a(1) ------RAV1(2)             <---------ANAC46        <---------ANAC46                       <---------- ---LBD16   ------>ZmHOX2a(1)      <---------MYB59 <---------ANAC58                      --------->GLK1(1) -----TOE1(2)              <---------ANAC58        <---------ANAC58                     ------->TEIL   ggttttagtgattcctcttctgtcgaatagcgtgaaacctaactggatgagatgggtgttgtccacattgaacttcatgtctctgtaacgaatttcctca  9714900                             --------->LBD16                             <---------HSFB2a(2)                            <---------LBD16                           <---------LBD16             --------->ATERF1(1) <---------ANAC58       <XXXXXXXXXXXXXXXXXXXXMIR781 <---------ANAC58 <----------DOF2          <---------ETT(2)                           <---------ARR14(2) -GT1       <---------ATERF1(1)            --------->ETT(2)                           --------->ARR14(2)   ctcgcgtccatcggagtctcctttaagcatccgggaaactctgtgtcgatagcgatggaactaaaatgtttcaaacaatctcttatcgaatccatctcta  9715000                                     --------->ARR14(2)                                     <---------GLK1(2)                                     <---------ARR14(2)                                 <---------LBD16 <---------ANAC58          <---------CCA1(2) <---------ANAC46       --------->MYB46(3)                                                       <--- <---------ANAC58      --------->ANAC46                 <---------MYB52(1)                      <----   cttccttgttccatctccaaacttcacccatctctctcggattttgaagactgaaacagtttgtttatctgaaatactaatctctctctctatctgattt  9715100                                                   ---------->DOF2                                                  <------NtERF2                                                 --------->LBD16                                                --------->LBD16                                               <---------LBD16                                           <-----------HVH21                                          --------->bZIP60(1)                                          <---------TGA1a                                          <---------bZIP60(1)                                          --------->TGA1a                                          ====================bZIP_DOF                                          --------->O2                                          <---------ANAC58                                          <---------O2  <-----------GT1                                          <---------ANAC58                                          ====================bZIP_DOF                                ====================bZIP_DOF                                <----------DOF2<------NtERF2                          --------->HSFB2a(1) <---------ATERF1(1)                      --------->WRKY38(1)                          --------->HSFC1(2)  ------>NtERF2                       <---------ANAC58                          <---------HSFB2a(1)--------->DEAR3(1)                   <---------ANAC58                          <---------HSFC1(2) <---------DEAR3(1)              --------->DAG2      ----                     --------->ALFIN1     --------->ANAC46                  ---------->DOF2<--------- ------ANAC46 ---------->DOF2----------------------->TaNAC69(2)   <-----------GT1 <---------ANAC46 -----LBD16   ======================================bZIP_DOF   <---------AHL20(2)<-------TEIL  <-----   cggagactcgaatactaatagcagtgggagtttccttttttcttacgtcgccggaaagtttccatttttttccagtcaaaaagttcgtgttgacttttat  9715200                        --------->ANAC58        <---------AHL20(2)        --------->AHL20(2)       <---------AHL20(1)    <---------GLK1(1)       --------->AHL20(2)    --------->GLK1(1)                                             --------->AHL20(2)   ------>ZmHOX2a(1)    --------->ANAC46                                                   <---------AHL20(2) ----->ZAT6             --------->ANAC58                                                  --------->YAB1 -DOF2 <---------AHL20(2)   <---------ARR11(3)---------->DOF2                        ------------>CBF ------GT1     <-----------RAV1(1)       ------>ZmHOX2a(1)               <---------HSFB2a(2)   ------   cactcctaatttaattcttgttggacacgagatttccattttcctctcaaaagcccaaaataagagaagcctgtttccgaagcggtttacaattttaata  9715300                                                                            --------->YAB1                                                                           <---------YAB1                                                                      <---------ICU4                                                                      --------->YAB1                 --------->ZAT14                              <---------ANAC58                 <---------ZAT14                        <----------DOF2--------->TOE2(3)        --------->AHL20(2)                         <----------DOF2   --------->ICU4         ---------        <---------AHL20(2)                   <----------DOF2  <---------ANAC46         --------->YAB1 --->ZAT6<---------AHL20(2)                 --------->TOE2(3) <---------ANAC58  <----------DOF2   ctaaaccgaattaaatcactaaaccgaagtctgactaataccaaaacctttttcttttcttttttcgtgtaaacattatcatcttttaaacataatacta  9715400             ----------->GT1        ------>MYB83        ------>MYB46(1)      --------------->AGL15      <---------MYB59  --------->AHL20(2)     <-----------------AG     ----------------->AGL1     <-----------------AGL1     ----------------->AGL2     <-----------------AGL2     ----------------->AGL3                         ---------->DOF2     ----------------->AG                      ---------->DOF2 >ZAT6<---------------AGL15              --------->YAB1                          --------->MYB52(1)   agaacataccaaattgggttaaaaatttaaaactcatgtcgaatgagaataaagaaaagtttaagttgagccaaaaaaaaaaaaaacagaacatacaaaa  9715500  Previous    Next  AGI:  At1g27890.1    Description:  CCR4-NOT transcription complex protein, putative. similar to CCR4-NOT transcription complex protein, putative [Arabidopsis thaliana] (TAIR:AT1G27820.1); similar to hypothetical protein OsI_020812 [Oryza sativa (indica cultivar-group)] (GB:EAY99579.1); similar to putative CCR4-associated factor 1 [Oryza sativa (japonica cultivar-group)] (GB:BAD68660.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337); contains InterPro domain Ribonuclease CAF1; (InterPro:IPR006941) Range:  from: 9714123    to: 9715031    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g27900.1    Description:  RNA helicase, putative. similar to ATP-dependent RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT3G26560.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN63193.1); similar to Helicase associated domain family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA92900.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO46643.1); contains InterPro domain Region of unknown function DUF1605 (InterPro:IPR011709); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domain AAA+ ATPase, core; (InterPro:IPR003593); contains InterPro domain DEAD-like helic Range:  from: 9715440    to: 9720555    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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