Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                   <---           --------->ANAC58                                                                ------>ZmHOX2a(2)           --------->ANAC58                                                                ==========     --------->ALFIN1                                                                   --------->ATHB12    <-------MYC3                                                                     <---------ANAC58    ------->MYC3                                                                    --------->ATHB12   <---------O2                                          <----------DOF2      --------->ANAC46   <---   <---------TGA1a                  --------->ANAC46    <---------ANAC58     <---------LBD16    -----   --------->TGA1a                  --------->ANAC58    <---------ANAC58     =====================HOX2a_HOX2a   --------->O2 <---------CCA1(2)   --------->ANAC58<---------ANAC58         --------->LBD16    <---- ----------------AGL1           <---------ALFIN1    <---------ANAC58         ------>ZmHOX2a(1)<------ --------------->AGL1         <---------ALFIN1     --------->MYB52(2)<---------ALFIN1<---------ANAC58   gtcccatgtgggcaaggcatctcttcattcttccacactcgcaagagacatgttccttgctttctgtttccccatcttcctcggaatgcttgatcggttt  9661700                                                                 ----------->GT1                                                           ----------->HVH21                                                          --------->LBD16                                                         --------->ANAC46                                                         --------->LBD16                                                         <---------LBD16                                                        <---------LBD16                                                      -------->P--------->ANAC58                                                      ------>MYB46(1) ---MYB83 <------ZmHOX2a(1)                           --------->ANAC46 ================HOX2a_HOX2a                          ------>MYB83 ---MYB46(1)                                        --------->AtMYB61 ---->MYB59                 <------NtERF2           <---------ALFIN1 -----AtMYB61            ------>NtERF2         <---------REM1(1)--------->ANAC58              <------ ---MYB52(1)--------->CCA1(2)  ----------->HVH21   --------->MYB46(3)                         <------   ggttttgccaaaggatacaaatgctgaggcctcatgacacaatagactggtgtaccaccccgggacaaggtagaataaatgaagacttatgtgtttaaga  9661800                                            <----------DOF2                                   --------->GLK1(2)                                   <-----------ARR10             ----------->GT1                                  <---------GLK1(2)    <----------DOF2 ---YAB1                       --------->HSFB2a(2)    <---------DAG2                          <------ ---TOE2(3)              ------->TEIL     <---------DAG2       <-------GAMYB <---------ARR14(2)  ----   tagtagttctaaatcacattgtaaatgaacttactagaatctcactctttcttctcccttttgagggttgtcaattgtagatttgtttcaacgatttaac  9661900                                                                                          --------->DEAR3(2)                                                                                         <---------ARR14(2)                                                                                         --------->ARR14(2)                                                                                         --------->SPL7                                                                                       ----------->HVH21                                                                                       <---------SPL7                                                                                    --------->SPL7                                                                                  <---------SPL7<----                                                             <----------DOF2      ----------->HVH21     ------>ZmHOX2a(1)                                    <-----------GT1      --------->SPL7<------- -----GT1                       <---------TOE2(3)  <----------DOF2           ----------->HVH21<------ --->GAMYB                      <---------TOE1(3)--------->LBD16             <---------SPL7<---------DEAR3(1)   tgtcttcctctacataagagtcaatagtctggttaaggttttgtcagtatgcgcgtttttttacttttaaaaactggaccggaccggaccggaccggcgg  9662000                                 ------------>CBF                                --------->ANAC58                                --------->ANAC46                                --------->ANAC58                            <---------WRKY38(1)                           --------->WRKY18(1)                          <-----------HVH21                      --------->YAB1                    <---------YAB1   --------->ICU4                  --------->ANAC58                  <---------------AGL15                              --------->ANAC46                  --------------->AGL15               --------->ANAC58     --------->TOE2(3)--------- --NtERF2        ----------------->AGL1               --------->ANAC46  <---------GLK1(2)  <---------ATHB12 --LBD16         ----------------->AGL2               --------->ANAC58  *TSS    <---------ATHB12 ---ANAC46       <-----------------AGL1    ------------>CBF          --------->ANAC58    --------->WOX13(1)   attagaacacaaaatttagaccattaatggtcaaacgcaatttttagcaatggcaaacgcaaacgctgttcaaggaatctcaatcgtttagcaatcacag  9662100                              <----------DOF2                             <----------DOF2                         <---------At4g35610                         <------NtERF2                         --------->ATERF1(1)                        <---------ATERF1(1)                        <---------RAP2.3(1)                        <---------ERF1                        <---------RRTF1(1)                       <---------RAP2.3(2)                       <---------RAP2.3(3)        ------>NtERF2              --------->GLK1(1)                  --------->ANAC46                            <-------              <---------GLK1(1)                  --------->ANAC58                ------>NtERF2             <---------ARR14(2)                  --------->ANAC58                --------->LBD16     <---------------AtSPL8  <---------DAG2     --------->MYB46(3)              <---------DEAR3(1)     <---------------AtSPL3------>NtERF2  ------>ZmHOX2a(1)                    <---------LBD16    <---------ANAC46   <---------DEAR3(1)<---------ALFIN1                     ------>ZmHOX2a(1)  >>>>>>>>>WRKY18    <---------MYB46(3)------>ZmHOX2a(1)                 --------->GLK1(1) <---------ICU4 >YAB1       --------->ARR14(2)       <---------ALFIN1             <-----------GT1      --------->YAB1   acattgacgagtacggatatcagtggctgcgccttttgctcctcctccctcccgccctcttcgtctgaattacaggtttcctccggcgagtcatcatctc  9662200                                                                                    --------->STY1(1)                            --------->MYB46(3)                             --------->CCA1(2)               ------>ZmHOX2a(2)                                          --------->ARR14(2)             <---------ARR14(2)                     --------->ARR14(2)    <---------ARR11(3)      ---             --------->ARR14(2)                     <---------ARR14(2)    <---------ARR14(2)      <--             --------->ARR11(3)           ------->GAMYB                   --------->ARR11(3)     ----             <-----------ARR10-------->P --------->MYB46(3)             --------->ANAC58       <----- --CCA1(2)   <---------ARR11(3)        --------->MYB52(1)               --------->ANAC58       ------   ttctcttccatcgctgatcttctcacagaaacaaccatgtctaacagacgctcgaatcggcaagatgagaacacaagatatgtccccaagggccatcagc  9662300           --------->ANAC58                                                                         -           --------->ANAC58                                                                        <-          ------->TEIL                                                                            ---      --------------->AtSPL8                                                                    <----      <---------------AtSPL8       ------>MYB46(1)                                             ------ ------>At4g35610                  ------>MYB83                                           <---------GLK1(2) -------At4g35610                  -------->P  -------->P                                --------->At4g35610 ------->RAV1(1)                  ------>ZmHOX2a(1) <----------DOF2                    --------->YAB1 ----At4g35610          ------->TEIL          <-----------GT1                         <---------ATHB12 --->At4g35610       <---------ATHB12--------->ZAT6<---------DAG2                   --------->WOX13(1)   agcagaagtttgtacccaaacccatgaatccaactcctacctctaattcaacccctttccctgtttctctctcttcttcgcttaggcaatcagattcctc  9662400                                                                                              <------                                                                                              -------                                                                                             --------          --------->LBD16   <------MYB83                                                    <-------GAMYB         <---------HSFB2a(2)<---------MYB46(3)              <-------GAMYB                   <------NtERF2         --------->HSFB2a(2)<------MYB46(1)             ------------>AtMYB77               <---------DEAR4(2)     --------->GLK1(1)     <---------AtMYB61       <------ZmHOX2a(2)                       <---------MYB46(3)  <---------ANAC58         --------->ALFIN1       --------->ARR14(2)                      <---------DEAR3(1)  <---------ANAC58     <---------ANAC46      --------->ALFIN1  <------MYB46(1)            --------->ALFIN1 -------->ALFIN1   <---------At4g35610     <---------ARR14(2)  <------MYB83       <---------At4g35610 --------MYB52(1)  --------->At4g35610    <------ZmHOX2a(1) >>>>>>>>>TAC1         --------->At4g35610 ------>LBD16  <---------ARR14(2)         ================HOX2a_HOX2a             <---------ZAT2 -----LBD16    --------->ARR14(2)        <---------YAB1----------->HVH21          --------->ZAT2 >ZmHOX2a(1)<---------GLK1(2)       <---------ZAT6<---------ARR14(2)      ---------->DOF2 <---------DREB2C(2)   cggtgcgagttccagagtctccgcttcgggtggtagtagggttaggattggggatcagggacagttggtatctagcaaaagtccagctcaaggcggtggg  9662500                                                                                                   --                                                                                               ------                                                                                               <-----                                                                                              <------                                    <---------At4g35610                                       <------                              --------->At4g35610                                <---------LBD16-----                       <---------bZIP60(2)                                <---------ZAT18     <------                     <------ZmHOX2a(1)   <----------DOF2                  <---------ZAT14     -------                  <-----------RAV1(2)<---------MYB52(1)                   --------->ZAT14     -------           <---------ANAC58   <---------At4g35610                        --------->ALFIN1     <------           <---------ANAC58  <-----------RAV1(1)                     ------>ZmHOX2a(2)       <-------  ----------->GT1 =======================RAV                        <------ZmHOX2a(2)       <--------  <---------ANAC46<------NtERF2     ------>NtERF2                   >>>>>>>>>>>>>>>>>LFY <---------MYB46(3) ---MYB46(3)     --------->LBD16  <---------RAP2.6(2)      <---------TOE2(3)     <-----------RAV1(2)- -->MYB55(2)     ------>NtERF2<-------GAMYB          <---------YAB1--------->ARR14(2)   --------->ALFIN1 ->ALFIN1<-----------GT1     <---------MYB46(3)      --------->ICU4<---------ARR14(2)   <---------AtMYB61   agttttgtgaattacttgccgcaggacgaggctgttgccgctggtttagggcctgatgatggaggtttggatccagtggagtctcagggagtggtggatc  9662600  Previous    Next  AGI:  At1g27750.1    Description:  nucleic acid binding. similar to FPA [Arabidopsis thaliana] (TAIR:AT2G43410.3); similar to FPA [Arabidopsis thaliana] (TAIR:AT2G43410.4); similar to FPA [Arabidopsis thaliana] (TAIR:AT2G43410.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO61466.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Spen paralogue and orthologue C-terminal (InterPro:IPR012921) Range:  from: 9657372    to: 9661945    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g27752.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO61467.1); contains InterPro domain Ubiquitin system component Cue (InterPro:IPR003892); contains InterPro domain UBA-like (InterPro:IPR009060) Range:  from: 9662072    to: 9667455    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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