Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                            --------->GLK1(2)                                                                                         --------->ARR14(2)                                                                                         <---------GLK1(2)                                                                                         <---------ARR14(2)                                                                                       --------->LBD16                                                                                     <---------LBD16                     ------>MYB46(1)                                               ------>MYB83          --------->AHL20(2)                  --------->WRKY18(1)                  --------->MYB52(1) ------>MYB52(1)     ------>MYB83            <-----------HVH21   <------MYB83      ------>MYB46(1) ---------GT1     --------->ANAC46      <-----------GT1          <------MYB46(1) <---------MYB59 ->AHL20(2)     --------->REM1(1) ----------->GT1             <---------MYB52(1) --------->AtMYB61 --AHL20(2)<-----------GT1        ------>ZmHOX2a(2)      <---------ARR14(2) <---------HSFB2a(2)     - ->GT1 --------->WOX13(1)        <------ZmHOX2a(2)       --------->ARR14(2) --------->HSFB2a(2)    --   taaccggttcaattaactacacctagcttataccgatcgtataaaccggtcaagaaccaaaaccgcttggtttccattctagaccaaaccggattctagt  9614500             <----------DOF2          --------->ARR11(3)                           ------>ZmHOX2a(2)          <---------ARR11(3)                          <------ZmHOX2a(2)          <-----------GT1                            <---------ARR14(2)        <---------YAB1                               --------->ARR11(3)      --------->YAB1                                 <---------ARR11(3)      <---------ICU4                                 --------->ARR14(2)     --------->ICU4                               <------ZmHOX2a(1)     <---------YAB1                              <---------At4g35610   --------->ATHB51                            <-----------RAV1(2)   <---------ICU4                        =====================HOX2a_HOX2a              <---------ZAT2   <--------HAHB4                        ====================HOX2a_HOX2a               --------->ZAT2   --------->YAB1                        ------>ZmHOX2a(1)                            <---------ALFIN1  <---------YAB1                      *TSS   <-----------HVH21                       <---------ALFIN1  --------->ICU4                  --------->AHL20(2)<---------GLK1(1)               --------->LBD16-- -------------->AGL15             <---------AHL20(2)--------->GLK1(1)              --------->ANAC46-- --------------->AGL3         --------->AHL20(2)>>>>>>>GRF7                 <----------DOF2      ----   ttccattattattatcttttttatcggattaaaaatataaatccttatgtcaggagatcccattctctgtctctctgtctttctcccccaactcgcgaac  9614600                                                                        --------->AtMYB61                                                                        <---------ALFIN1                                                                       --------->MYB46(3)                                                                     ------>NtERF2                                                                     <---------ATERF1(1)                                                                    --------->DEAR3(1)                                                                    ----------->HVH21                                                                   <------NtERF2                                                                   --------->RAP2.3(1)                                                                   --------->ORA47(2)                                                                  <---------RAP2.3(1)                                                                  <---------ERF1                                                                  <---------ORA47(2)                                                                  <---------DEAR4(2)                                                                  <---------RRTF1(1)                                                                  <---------RAP2.6(1)                                                                  <---------ATERF1(1)                                                                 <---------DEAR3(1)                                          ------>ZmHOX2a(1)      <---------ATERF1(2)                                         <---------ALFIN1        --------->ATERF1(2)                                      <---------ARR14(2)         <---------RAP2.3(3)                                     <------NtERF2               <---------RAP2.3(2)   ------>ZmHOX2a(2)                                     --------->At4g35610        <---------ABI4(1)     <---------GLK1(1)                                     --------->ZAT2             --------->ATERF1(1)   --------->GLK1(1)                                     <---------ZAT2            <---------ATERF1(1)   <---------ARR11(3)                                     <---------At4g35610      --------->DEAR3(1)     --------->AGP1                                    <---------ATERF1(1)       --------->ATERF1(2)    <---------AGP1            <------ZmHOX2a(2)   --------->ANAC58--------->At5g28300--------->ATERF1(1)<------ZmHOX2a(2)           <---------ARR11(3)   --------->ANAC58<---------MYB52(1)------>NtERF2      <---------ARR14(2)           --------->ARR11(3)  --------->RAP2.6(3)            <---------ATERF1(2)    --------->ARR14(2) ------->ANAC58     <---------DEAR3(1)--------->ARR14(2)   <---------ALFIN1--------->MYB46(3)       < ------->ANAC58 --------->MYB46(3)<------NtERF2<---------DEAR3(2)--------->DEAR3(1)  --------->ARR11(3) ------>DOF2=====================================HOX2a_HOX2a --------->DEAR3(2)     <---------CCA1(2)   aaagcaaaccctagatcatccatcggcgagtgagacggcagctcctcgtcggtaattccttccaccggcggcgaccactcaccctcagatctctcaatcc  9614700                                                            <---------RAP2.3(2)                                                            <---------RAP2.6(2)                 -----                        <----------DOF2                     <---------ANAC55(2)                 <----                     --------->ANAC58                      <---------LBD16          --------->AGP1                     --------->ANAC58                      --------->RAP2.6(3)     <---------ZAT2                  <---------SPL7                      ------>ZmHOX2a(2)            --------->At4g35610              --------->GLK1(2)              <----------DOF2--------->ANAC55(2)    --------->ZAT2   <---------CCA1(2)<---------ZAT18 <----------DOF2 --------->ARR11(3)             <---------At4g35610 ---------ATHB12--------------->AtSPL8   ---------->ID1    <---------At5g28300------>NtERF2     -----   cactcatctctgtaacattctgtacgctttctctctctctttcttcgcttttgtgatctattacggctcggtctctgtgcctcccagctctattttggag  9614800                                <---------ANAC58                                <---------ANAC46                                <---------ANAC58                            <----------DOF2                            --------------------->WRI1  <----------DOF2             <-----------GT1 ---->ZAT14            ---------->ID1              <----------DOF2                 <---------CCA1(2) -----ZAT14      <---------AHL20(2)<------------------------ANAC81              <---------AHL20(2) ---->ZAT18 <------------------------ANAC81        <---------DAG2              --------->AHL20(2) ---   cactgcttcgtctctgtgtttatttggctcctttgtgtgtttctctatctctgcttttcttttgtattgctctgtttccgattttatatccatatgtctc  9614900                                                                         <---------DAG2                                                                       ------>NtERF2                                                                   ------>ZmHOX2a(2)                                                                  <------ZmHOX2a(2)                                                                  --------->GLK1(1)            --------->ARR11(3)                                    <---------GLK1(1)           <---------CCA1(2)                                     --------->ARR11(3)      <------MYB46(1)                                            <-----------ARR10      <------MYB83                        <------------CBF       <---------AGP1   ------------>CBF      ----------->GT1                 <-----------GT1  <---------At4g35610   <---------CCA1(2)     <-  --------->MYB52(2)              <----------DOF2      --------->At4g35610<----------DOF2         <-- -------->GT1                  ---------->ID1    ------------>CBF<---------ARR11(3)          --------   tggttatttggttatatctatgtgtgattctttgttcttttttccattgaattcaatagctgactaagatctctgccttttatcttcaatagttgctcaa  9615000         --------->YAB1         <---------ANAC58                                 <----------DOF2         <---------ANAC58                            ------>MYB83                                   -         --------->ANAC55(2)                         ------>MYB46(1)                    --------->ARR11(3)      <----------DOF2      <---------ANAC58      -------->P                             <---------ARR11(3)  ---------->ID1           <---------ANAC46     <-----------GT1                         --------->AHL20(1) ---------DOF2             <---------ANAC58  --------->ARR11(3)                        --------->RVE1(1) -------ICU4  --------->YAB1                 <---------ARR11(3)   <---------AHL20(2)   --------->CCA1(1) ---->CBF<---------ANAC55(2)      <---------TOE2(3) --------->WOX13(1)       <-----------RAV1(1)   <-   tcttttcgctttcgtaacataatttagtttcttgttgatgtttttgatatctaccaatctcttttcaatttatgtctatatgttgctaaatatcttgttc  9615100                                         <------NtERF2                                        --------->LBD16                                       <---------ANAC58         --------->TOE2(3)  --------->GLK1(2)      --------->GLK1(1)----------->GT1 <---------DEAR3(1)  <---------WOX13(1)  --------->ALFIN1 <---------ANAC46                ---------->DOF2 -------->ATHB12 <-----------RAV1(2)   <---------ANAC58   --------->ATHB12                 <--------- --------ATHB12  <---------LBD16      <---------LBD16    <---------ATHB12      ----------->GT1   aatgactgatttcttaaactcagggtggaaattctgccatggcggagcatttggcttcaatctttggtactgagaaagacagagtgaattgccctttcta  9615200                  <------NtERF2                  <---------MYB52(1)                 <-----------HVH21                 <---------RAP2.6(3)                 ------>NtERF2                 <-----------TGA1            <----------DOF2                            -------->P--------->ANAC46           <---------ANAC58                            ------>MYB83           <---------ANAC58      <---------ANAC58      ------>MYB46(1)       <----------DOF2           <-------GAMYB         <---------ANAC58     ------>ZmHOX2a(1)   ------>ZmHOX2a(1)           --------->ATERF1(1)  --------->ZAT2      --------->SPL7<---------ALFIN1    --------->ARR14(2)          --------->ABI4(2) <-----------HVH21 --------->ZAT6    <---------ARR14(2)  ----------->HVH21        --------->DEAR3(1) <---------ALFIN1   --------->ATHB12  --------->ICU4              ------->GAMYB  --------->LBD16                    --  <---------YAB1--------->bZIP60(1)          --------->MYB46(3)--------->ANAC46             --------- -DOF2    <---------MYB46(3)  <---------MYB52(1)--------->MYB46(3)----------->RAV1(1)    ------->TEIL   cttcaagattggcgcttgccgtcatggtgaccggtgctcgcgtcttcacaaccgtcctaccatctccccaacactccttctttcaaacatgtaccaaagg  9615300                                                                                        <----------DOF2                                                                                       ------>ZmHOX2a(2)                                                                                      <------ZmHOX2a(2)                                                                                      ===============                                                                                      <---------RVE1(1)                                                                                     <---------ARR14(2)                                                                                     <---------ARR14(3)                                                                                     <-----------ARR10                                                                                     --------->ARR14(3)                                                                                     --------->ARR11(3)                                                                                     --------->GLK1(2)                                                                                     <---------ARR11(3)                                                                                     --------->ARR14(2)                                                                          --------->GLK1(1)                                         ----------->HVH21                <---------GLK1(1)                                       --------->ANAC46                  <---------ARR14(2)        <-                                     --------->AtMYB61      <------ZmHOX2a(1)       <------ZmHOX2a(1)                                     <---------ALFIN1       ==================================HOX2a_HOX2a     <---------ICU4                 <---------ATHB12     <-----------RAV1(2)  <----------DOF2     ---     --------->ATHB12               <---------MYB55(2)  <-------TEIL    ======================HOX2a_HOX2a    --------->ICU4                  --------->MYB46(3) --------->CCA1(2)<------ZmHOX2a(1)       <----    <---------YAB1                 ------>MYB46(1)     --------->GLK1(2)=====================HOX2a_HOX2a <<<<<<<GRF7               ---------->CDC5      --------->ANAC46      <---------TOE2(3)============== --------->HVH21 <---------ANAC46  ------>MYB83--------->LBD16    <----------DOF2 <---------TOE2(3)<- ->DOF2     ----------->RAV1(2)    -------->P<---------LBD16=================================HOX2a_HOX2a   cctgacatgattacccctggtgttgacgctcagggccaaccactcgacccgcgtaagattcaggagcactttgaggatttctttgaggatctttttgagg  9615400  Previous    Next  AGI:  At1g27640.1    Description:  unknown protein Range:  from: 9614450    to: 9614893    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g27650.1    Description:  ATU2AF35A; RNA binding. similar to ATU2AF35B, RNA binding [Arabidopsis thaliana] (TAIR:AT5G42820.1); similar to ATU2AF35B, RNA binding [Arabidopsis thaliana] (TAIR:AT5G42820.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO66301.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain U2 auxiliary factor small subunit; (InterPro:IPR009145) Range:  from: 9614538    to: 9616344    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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