Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                  --------->ARR11(3)                                                                               --------->YAB1                                                                              <---------YAB1                                                                            <---------ICU4       <------MYB46(1)                                                      --------->YAB1       <------MYB83                                                        --------->ICU4     <---------WOX13(1)                                                  --------->YAB1     ------>ZmHOX2a(2)   --------->ATHB12                                                     <---------YAB1     <---------  <---------YAB1--------->AHL20(2)  <---------YAB1                    --------->YAB1   <---------WOX13(1) --->ID1    <---------YAB1  ----------->GT1                     --------->AtLEC2<---------ARR11(3)   atttttgattggtttttattaaacacaaaatggataatatgatgagtttaaaaacagtctttctccatgctagtatgataatgatattgactgatcgatg  9610700                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                               <-----                                                                                               <-----                                                <-------TEIL                                   <-----                                                --------->SPL7                                 ------                                                ------->TEIL                             --------->AHL20(1)                                              <---------SPL7                             <---------AHL20(1)                                              --------->TOE2(2)                       --------->AHL20(2)                                            --------------->AtSPL3                    <---------AHL20(2)                                            <---------------AtSPL3                  --------->AHL20(2)                                           --------->MYB52(1)                       <---------YAB1                                        --------->TOE1(3)                           <---------AHL20(2)                                       --------->At4g35610                         --------->TOE2(3)                                       <---------At4g35610                       --------->ICU4------  ---------->DOF2                  <----------DOF2                            --------->AHL20(2)<---- ------------WRI1                  --------->TOE2(3)                          <---------AHL20(2)-----   aattcaaaggaatacatgttttagtttagttcatcaactttagcttaacgtacggttcttaaatcgaagccaaaattcaaataaatattaatatatatcc  9610800                                                    --------->ATHB12  --------->MYB59                                   <--------ATHB1 ----------->AGL1                                  --------->ICU4                       ----------->GT1 ------------AG                                    <---------YAB1                       <---------ZAT6 ----------->AGL3                       --------->AHL20(2)                          ---------->DOF2 ------------AGL1                       <---------AHL20(1)                      <---------MYB46(3) ------------AGL2                    --------->AHL20(2)                    <---------AHL20(2) ------------AGL3              --------->YAB1      <---------ATHB12        --------->AHL20(1) ----------->AGL2         <---------DAG2<---------AHL20(2)                 --------->AHL20(2) ----------->AG--------->YAB1 <---------YAB1  <-----------GT1              <---------AHL20(1) -----------AGL15         <----------DOF2   --------->AHL20(2)             <---------ARR11(3) ---------->AGL15 <---------GLK1(2) --------->AHL20(2)                     --------->ARR11(3)   aattttggtaatctctatcagattatagctttatgaaaataaaaaatttaacaatgattcaaattgctaaatgctaatatattggttaaagtgttatttt  9610900                                                                                   <---------AHL20(2)                                                                                  --------->AHL20(2)                                                                                 <---------AHL20(2)                                                                              --------->AHL20(1)                                                                     --------->ANAC58                                                                     --------->ANAC58                                                                   --------->MYB52(1)                                                          ------->GAMYB       <---------ARR11(3) <---                                                          ----------->RAV1(1) <---------AHL20(1) ----              <---------TOE2(3)                     --------->TOE2(3)--------->ANAC46           -----  ---------->DOF2    --------->ZAT6        <---------ICU4--------->MYB46(3)   --------->AHL20(2)<----   ctgcaaaagttcaaataatgttaagactatttctatgtagtttgatcatttcaatctcaaccacataaaaaacgacactatatattaattcgaagcccat  9611000                                 ---------->DOF2                         ------------>CBF                              --------->ARR11(3)            <---------YAB1    --------->YAB1              <---------YAB1<---------CCA1(1) --------->ANAC58         --------->ARR14(2)  <---------ATHB12             ----------->TBP    <-----------GT1         <---------ARR14(2)  <<<<<<<<<ARR1             <---------AHL20(2)   <-----------GT1        --   --------->ATHB51   <---------ANAC46          <---------ARR14(2)     <---------ARR11(3) --------->ANAC58 ------ARR14(2)       <---------ANAC58         --------->GLK1(1)     --------->MYB59      *TSS    --- ----->ARR14(2)       <---------ANAC58 ---------->DOF2--------->AHL20(2)<---------RVE1(1) --------->RAP2.6(2) ---->GLK1(1)     <------------CBF--------->DAG2--------->ARR14(2)   ----------->ARR10--------->MYB59 -----CCA1(2)  <---------YAB1<<<<<<<<<ARR2     <---------CCA1(2) <---------ZAT6 <----------DOF2<-----   atccattatcgaatatgatgaattgcttacaatcataaagtcaaagcccatatccattttataaatagagttagatatttatcttttttaggtcgcaaca  9611100         <----------DOF2        ------>ZmHOX2a(2)                                                         ------>MYB83       <---------RVE1(1)                    ----------->GT1                       ------>MYB46(1)       <------ZmHOX2a(2)                <---------ZAT2                            --------->AtLEC2      --------->ARR11(3)                --------->ZAT2                            --------->ANAC46      <---------AGP1                    --------->At4g35610                       --------->ANAC58      --------->AGP1                    <---------At4g35610          <---------DAG2              ----      <---------ARR11(3)               ----------->RAV1(1)        --------->ARR11(3)             ---- ------->LBD16                     --------->DAG2                 <---------ARR11(3)           <----- ------>ANAC46                    ---------->DOF2             ---------->DOF2     --------->ANAC58 ----ALFIN1    --------->LBD16 --------->YAB1       <-----------GT1  <----------DOF2--------->YAB1   ccgcaatagatcttttccccaagtttcagacaaacataaagcagcagagaaaattttcaagtttcaaagagcttttccctcaccaagcaaaatttgggtt  9611200                                        <----------DOF2                    <---------CCA1(2)                                    ------>ZmHOX2a(1)            <---------At4g35610            -----                                  <---------ICU4                 =============HOX2a_HOX2a    ------>NtERF2                            --------->TOE2(3)                    ------>ZmHOX2a(1)          --------- ----->MYB52(2)     ----------------->AG--------------------->WRI1     ------>ZmHOX2a(2)    <-------- ------->GT1  <-----------GT1<---------MYB52(1)             --------->WRKY12          --------->WOX13(1) ---P--------->TOE2(3)     ----------->GT1                <-------GAMYB==============================   agtgaaatctcaaattttgctatccaatttcgttaatccttcctttgttagagtcgatttcgttgtcctctgatctcatctcttgaatcaatcggctcct  9611300                            -------->HAHB4                        <---------AHL20(2)                            <---------ICU4                       --------->AHL20(2)                            <---------AHL20(2)               --------->AHL20(2)                           --------->ICU4                    <---------AHL20(2)                           <---------YAB1                   <---------AHL20(2)                           <---------ATHB51          <---------ANAC46                      <---------ANAC58               <---------ANAC58                      --------->ANAC55(2)            <---------ANAC58                       <--------    <----------DOF2   ----------->GT1                <---------ANAC55(2)                    <--------    ------>ZmHOX2a(1) <---------ANAC58            --------->GLK1(1)                         <--------   --------->TOE2(3)  <---------ANAC46           --------->ARR14(2)          ------>ZmHOX2a(1) ------ ->ZmHOX2a(1)         <---------ANAC55(2)        <---------ARR14(2)       ------>NtERF2     <-------- >ARR14(2)   ==============================HOX2a_HOX2a      --------->AHL20(2)     <---------AHL20(2) -ARR14(2)   ------>ZmHOX2a(1)               <---------At4g35610 <---------AHL20(2)--------->AHL20(2) ==HOX2a_HOX2a   --------->ANAC55(2)------>ZmHOX2a(2)----------->GT1     --------->DEAR3(1) ---------   ctaatcctttacctccttcacgtttcgtaattattcgatctgttttctgcagatttcgtgaatttaatttaatcgcctcctcgattttaatatttcgtga  9611400                     <---------ANAC58                     <---------ANAC58                                           <---------ANAC46      --------->ARR14(2)          <---------ATHB51                      --------->ARR14(2)      --------->GLK1(2)           --------->ICU4             --------->At4g35610<---------ANAC58      <---------ARR14(2)  <---------REM1(1)       <---------AHL20(1)    <---------ARR14(2)     <---------GLK1(2)    <-----------RAV1(1)     --------->AHL20(1)    <---------GLK1(2) -ANAC46           --------->ARR11(3)            --------->AHL20(2)   ----------->ARR10 -ANAC58         --------->HSFC1(2)            --------->AHL20(2)   <------ZmHOX2a(2) -ANAC55(2)      <---------HSFB2a(1)         --------->AHL20(2)  ----------->ARR10 --->ATHB12      --------->HSFB2a(1)   <----------ID1        <---------At4g35610<---------ANAC58 -ANAC58 <-----------RAV1(1)   ----------------->AGL1        --------->ZAT2     ----------->GT1 >ANAC55(2)      <---------HSFC1(2)    ----------->GT1       <---------ZAT2    ---------->ID1--------   tttgatagaatctgttggaaatttcttgatgttgcgataatgggtcaaaaaatatatatgtgaagctgagatcagatttgtgtcgtattatgtcccaaag  9611500                                               <---------ARR11(3)                                               <---------ARR14(2)                                               --------->ARR11(3)                                               --------->GLK1(2)                                          --------->At4g35610                                          <---------At4g35610                                      <-----------HVH21                                 <---------CCA1(1)                                 <---------RVE1(1)                     <---------ANAC58                                --------->ARR11(3)                     <---------ANAC58           ------->TEIL         <---------ARR11(3)                <---------ANAC58            <------           --------->GLK1(2)    <---------ARR14(2)    <---------At4g35610    --------->MYB52(2)     -   <-----------GT1     <---------------AGL15   --------->ARR14(2) <---------ANAC58   --------->ATHB12 -->DOF2<---------ATHB12        --------->ARR14(2)    --------->At4g35610  <---------MYB52(1) <------   ctatttaacaatgaatctgtgtttgctatttgcagatatttgtcagcaaaatctgcagctaaattgggacttgtcttgttagttcaaagattgaaacttt  9611600  Previous    Next  AGI:  At1g27630.1    Description:  CYCT1;3; cyclin-dependent protein kinase. Identical to Cyclin-T1-3 (CYCT1-3) [Arabidopsis Thaliana] (GB:Q8LBC0;GB:Q9SFZ4;GB:Q9SFZ5;GB:Q9SXC3); similar to cyclin family protein [Arabidopsis thaliana] (TAIR:AT5G45190.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61109.1); contains InterPro domain Cyclin (InterPro:IPR006670); contains InterPro domain Cyclin-related (InterPro:IPR013763); contains InterPro domain Transcription regulator cyclin (InterPro:IPR015429); contains InterPro domain Cyclin, N-terminal (InterPro:IPR006671); contains InterPro domain Cyclin-like (InterPro:IPR011028) Range:  from: 9611090    to: 9614323    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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