Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                  --------->TOE2(3)                <-----------------AGL3              <---------ARR11(3)              --------->ARR14(2)                           <---------ARR14(2)              <---------ARR11(1)               <---------MYB46(3)             <---------CCA1(2)                <---------AtMYB61        --------->ANAC58                      --------->ALFIN1 ------>ZmHOX2a(1)        --------->ANAC46                      <---------ZAT6<------ZmHOX2a(2)        --------->ANAC58                <---------YAB1     --------->ARR14(2)      <---------ALFIN1         --------->TOE1(3)        ==============HOX2a_HOX2a    <-----------HVH21          --------->TOE2(3)        <------ZmHOX2a(2)            --------->YAB1    ------>ZmHOX2a(1)       -------->P-------->HAHB4   --------->ARR11(3)            --------->AHL20(2) ---->ZmHOX2a(1)--------->TOE1(3)    <---------ATHB12  <---------ARR11(3)    <-------TEIL       <----   cctctccttcacgccaaatcttaaaatggctacccttaaatgattctagtggtggaagatcgatcctcttctcgctaaatacatctataatatagagttt  9567500                --------->ANAC46             ----------->RAV1(1)             ===========================RAV            --------->AtMYB61             <------ZmHOX2a(1)           --------->MYB46(3)           --------->LBD16      --------->ARR14(2)                <---------TOE1(2)      --------->GLK1(2)          --------->ZAT2      <---------ARR14(2)         <---------At4g35610                                ------>MYB83      <-----------ARR10          --------->At4g35610                                ------>MYB46(1)     <---------GLK1(2)      ----------->RAV1(2)                           --------->ANAC58        ---  --------->HSFB2a(2)      -------->P  <---------LBD16        <-----------GT1       -------->P  <----  <---------HSFB2a(2)    <---------MYB111(2)             ---------->DOF2  --------->ANAC58      <---- ---TEIL  -------->P     <---------MYB111(1)          --------->LBD16<---------DEAR3(1)    ----------   cattcgagaatctaccaccagaaaccacttacctgagcttcccaggaatcgataccctgaaaagtcactcttcggctcgtaaaccctaccatcttctggg  9567600                                                             --------->At4g35610                                                             <---------At4g35610                                                 <---------RAP2.6(2)                                                ------>ZmHOX2a(2)                                                <---------LBD16                                               --------->ARR14(1)                                               --------->CCA1(2)                                               <------ZmHOX2a(2)                                              <---------ARR14(2)                                              --------->ARR14(2)                                              --------->ARR11(3)                                              --------->ARR11(1)                                              --------->ARR14(3)      <----------ID1                          <---------ARR14(3)      --------->ANAC46                        <---------ARR11(3)      --------->ANAC58            --------->At4g35610<----------DOF2      --------->ANAC58         --------->At4g35610--------->LBD16             --------->ANAC58 -------->GT1             --------->WOX13(1)  --------->AGP1 <------NtERF2 <---------SPL7 ---GAMYB--------->MYB46(3)  --------->YAB1  <---------GLK1(1)       ---------->DOF2 -----ANAC46         --------->At4g35610     --------->GLK1(1)      --------->YAB1       --------->MYB52(1) ->RAV1(2)   --------->YAB1 <---------ATHB12----------->ARR10<---------ZAT14  --------->ANAC58   ttgtaaatacgacaaccatactcttctgcaatcagcatcagcaatggagatccggcttttggctgcagaatcaaagtcgaacgcagagacttaacaggct  9567700                                              <----------DOF2                                           --------->LBD16                                          <---------RAP2.6(2)                                         ------>ZmHOX2a(2)                                         <---------LBD16                                        <------ZmHOX2a(2)                                        --------->CCA1(2)                                        --------->ARR14(1)                                       <---------ARR14(2)                                       --------->ARR11(3)                                       <---------ARR11(3)                                       <---------AGP1                                       --------->AGP1                                       --------->ARR11(1)                                     ----------->ARR10                                   ------>ZmHOX2a(2)                                  <------ZmHOX2a(2)                                 --------->ARR14(2)                                 --------->ARR11(3)                                 <---------ARR11(3)                                           <------                                 <---------ARR14(2)                                          <-------                                 --------->AGP1                                            --------->ARR11(3)                                 <---------AGP1                                            <---------ARR11(3)                    --------->MYB52(2) --------->ARR14(2)              --------->AtMYB61   --------->ARR14(2)                   <-------TEIL <---------CCA1(2)             ---------->DOF2        --------->TOE2(3)      ===================================HOX2a_HOX2a  --------->At4g35610        --------->MYB46(3)      <------ZmHOX2a(1)        ----------->ARR10      <---------At4g35610  ----------->RAV1(2)-------      ====================================HOX2a_HOX2a <------NtERF2    <---------ALFIN1    <---------ARR14(2)   caaaatcaggaatactcgatgttcgtttgagcgtagatctagatccggcttttggcagcaaattcaaagtcgaacacccctgaacagcctcaatatctgg  9567800                                  <---------ARR11(3)                                  --------->ARR11(3)                         ------>ZmHOX2a(2)                        <<<<<<<<<GATA-1                        <------ZmHOX2a(2)                        <---------GLK1(1)                                                       <----                        <<<<<<<<<GATA-2                                                         <----                        <<<<<<<<<GATA-3                                                         <----                        <<<<<<<<<GATA-4                                                        <-----                       <---------AGP1                                                 <---------ANAC46                       <---------ARR11(3)                                            <------NtERF2                       --------->ARR14(2)                         <----------DOF2  <---------DEAR3(1)                       <---------ARR14(2)                     <---------ANAC46    <------ZmHOX2a(1)          --------->MYB52(2)    <---------MYB52(1)            <---------ANAC58  <---------TOE2(3) ---HSFB2a(2)          --------->ARR11(3)            <----------DOF2      <---------TOE2(3)  *TSS---- --LBD16 <-------TEIL <---------CCA1(2)     <---------MYB52(1)<---------ANAC58 <XXXXXXXXXXXXXXXXXXXXMIR870 -->HSFB2a(2)        ----------->ARR10    <XXXXXXXXXXXXXXXXXXXXXMIR2936   <---------YAB1<---------MYB52(1)   aaaactcgatgttcgtttgagcgtagatctctccattatctcgtctgttttttttcttttaatgtcgtctttcgataagattgaggaggcgttaagttgc  9567900                                                          <---------AHL20(2)                       --                                                          <---------AHL20(1)                       --                                                          --------->AHL20(1)                       --                                                         --------->YAB1                            <-                                       ----------------->AGL2                                      --                              <---------MYB55(2)         --------->AHL20(2)                        --                              --------->MYB46(3)         <---------AHL20(2)                       <-- <------------CBF           --------->ARR14(2)       <---------ARR11(3)                       ------- -----ANAC58               <------ZmHOX2a(1)   ------->GAMYB     <-----------GT1             <-------TEIL -----ANAC46             --------->MYB59    --------->MYB52(1) <---------AHL20(2)      --------->ANAC46 -----ANAC58        <---------YAB1<---------ALFIN1 --------->ANAC58                 --------->ARR14(2) ----LBD16       <---------YAB1--------->AtMYB61   --------->ANAC58                 <---------ARR14(2) ----->LBD16  <---------ARR11(3) ----------->RAV1(2) --------->AHL20(2)        ------------>CBF<-----   gcatattgaaatggaagacattatagttaggaaccaccaggcccagtaacagcaagaaattatattttaacgggtctatggcccaatatacgacgtccat  9568000         ----------->GT1         <---------ANAC58         <---------ANAC58    ------>ZmHOX2a(2)   <------ZmHOX2a(2)  <---------ARR14(2)  --------->ARR14(2) ------->ANAC58                                       ----------->GT1 ------->ANAC55(1)                               --------->AHL20(1)                         <-------- ------->ANAC55(2)                               <---------AHL20(1)                       --------->AHL20(2) --------ANAC55(2)                               --------->ARR11(3)                      <---------AHL20(2) ------->ANAC46                                <---------TOE2(3)                         <---------AHL20(1) ------->ANAC58                    <---------YAB1<---------AHL20(2)           ----------->GT1 -------LBD16         <---------YAB1     <---------YAB1                 <---------WOX13(1)<---------AHL20(2) -->WOX13(1)          <-----------------AG  <---------WOX13(1)   <---------YAB1          --------->AHL20(1) ------HVH21         <-----------GT1--------->YAB1   <---------TOE2(3)--------->ATHB12   --------->AHL20(2)   cacggatcgtttcgttacaaaattttcatttttggttatcattttgattaatattttggttaaaattttgtttgattggactgtatatcaatttatttta  9568100                                                   <---------ARR11(3)           ------>ZmHOX2a(1)                                               <---------ANAC58                --------->TOE2(3)                                               <---------ANAC58                --------------->AGL15                                             <---------AHL20(2)                <---------------AGL15                                        <---------AHL20(1)                    <-----------------AG                                        --------->AHL20(1)                    ----------------->AG                                        <---------AHL20(2)                    ----------------->AGL1                                       --------->YAB1            --------->ARR14(2)         <<<<<<<<<                                       <---------AHL20(2)        <---------ARR14(2)        <------MYB83            --------->AHL20(2)         --------->AHL20(2)        <---------GLK1(2)        --------->MYB59     --------->AHL20(2)            <---------AHL20(2)        <---------TOE2(3)<-----------------AGL2     <---------AHL20(2)            --------->AHL20(2)   <---------AHL20(2)    <-----------------AGL3    <---------AHL20(1)           --------->ANAC55(2)   --------->ICU4  <----------DOF2    <---------AtMYB61   --------->YAB1                <---------ANAC55(2)   --------->AHL20(2)     <-----------------AGL1 -YAB1--------->AHL20(2)    <---------YAB1   <-----------GT1<-----------GT1 <-----------GT1<------MYB46(1)   gtttaaaataattttaaaatataaaacaatatgatacttaattatattttcttgatatttattaacatattctctttttttcctcaattggtttggtttg  9568200                ------>ZmHOX2a(1)                                             ----------->GT1               --------->TOE2(2)              <----------DOF2            --------->AHL20(2)               --------->TOE1(2)              <---------DAG2             <---------AHL20(2)   --------->ANAC58                  --------->GLK1(2)                  <---------AHL20(2)   --------->ANAC46   <----------DOF2<---------ARR11(3)                 --------->AHL20(2)   --------->ANAC58   <---------DAG2--------->RVE1(1)            <---------AHL20(2)<---------ANAC58 <MYB80  --------->AHL20(2)       --------->AHL20(2)            --------->AHL20(2) <---------ANAC58   attacacgatataaaatcctatgactttttaaaaaaaaaaatctgaaacttttttgtttagctagatttattttttaaattagtaacttgtgtttctctc  9568300                                                                                                   <-                                                                                                   --                                                                                            <--------                                                                                        --------->ARR11(3)                                                                                        <---------ARR11(3)                                                         ----------->GT1                <---------ARR14(2)                                                    ----------->HVH21                   --------->ARR14(2)                                                  <---------ANAC55(2)                --------->YAB1<-                                                  <---------ANAC58               <---------AHL20(2)<-           <----------DOF2                        <---------ANAC58               --------->AHL20(2)<-       <-----------GT1           <----------DOF2  <---------ANAC46      <---------ICU4  <---------GLK1(2)   aaaaactaaaaaccttttagcacataaactatcaactttctaacatgtgatttcgtgaagggtttttagtttaaaaattgcatttaatcagattttcatt  9568400  Previous    Next  AGI:  At1g27540.1    Description:  F-box family protein. similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G27580.1); similar to At3g03730-like protein [Arabidopsis lyrata] (GB:ABY60296.1); contains InterPro domain Protein of unknown function DUF295 (InterPro:IPR005174) Range:  from: 9566319    to: 9567893    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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