Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                   <---                                                                                                 <---                                                                                              ------- ------>ATHB51         --------->ETT(2)                                                       ------- ------>YAB1   <---------YAB1                                                                -------- ------ATHB12 --------->TOE2(3)                                  ------->GAMYB               -------- ->MYB46(3)  --------->YAB1                             ----------->GT1             <---------LBD16<-   taatcgaacaaaaaatcatcaatagtagacagagtttagatggatagaaccttgagaagagaaacaacgctctcgacttcttcaatctcggagaagtgac  9558000                                                                    <------NtERF2                                                                   ------>NtERF2                                                                  --------->RAP2.3(2)                                                                 --------->RAP2.3(1)                                                                 <------NtERF2                                                                 --------->RRTF1(1)        ===============================HOX2a_HOX2a              <---------ORA47(2)        <------ZmHOX2a(2)                                       <---------RAP2.3(1)      ------->GAMYB                                             <---------ATERF1(1)     <---------ATHB12                                          <---------RAP2.3(2)     --------->MYB46(3)                                        <---------DEAR3(1)  --------->TOE1(2)                                            <---------RRTF1(3) ------DEAR3(2)                                               <---------At4g35610 ------MYB46(3)                                               --------->At4g35610 ----->AtMYB77                                               ------->GAMYB                       <--- -->MYB52(1)                                                --------->MYB46(3)             --------->ALFIN1 --->TGA1                                         --------->At4g35610                 ---------->DOF2 --->HVH21                                        --------->ZAT2<---------DEAR4(2)--------->At4g35610 --------ARR14(2)               ------>ZmHOX2a(1) <---------At4g35610             <---------At4g35610   ggttccaacgatcccaatcccaatcccacttatcctcactcgaactagtatcagctccatcaacagcggcgcaatttcgcagacagcttaaagatggggc  9558100                                                                                   <---------ZAT2                                                                                   --------->ZAT2                                                    <-------TEIL                   --------->GLK1(1)                                                    <---------LBD16                <---------GLK1(1)                                                   --------->CCA1(2)          --------->ETT(2)                                                   --------->ARR14(1)      <---------MYB46(3)                                                  --------->ARR14(2)       <------MYB46(1)                                                  <---------ARR14(2)       <------MYB83 --------->LBD16                                                  --------->ARR11(1)      <---------AtMYB61                                                ----------->ARR10       <-------GAMYB <---------LBD16                                              <---------MYB52(1)       <---------MYB46(3)                                        --------->ETT(2)               --------->MYB52(2)           <--------P                   --------->WRKY38(1)            <-----------RAV1(1)        <--  <---------ZAT6                        --------->WRKY12           <---------ANAC58--------->At4g35610 <---------TOE2(3)                   <---------ANAC58              <---------ANAC58<---------At4g35610 <---------TOE1(3)                   <---------ANAC46 ----------->GT1  --------->MYB55(2)  <--------- -------DOF2<-------TEIL             <---------ANAC58 --------->LBD16<---------MYB52(1) ------>NtERF2   tttagggttacaggttgatatagaagaagcgaaggaatgtcgtagaccgatagatacggagaaatttgtgcgtttgttggtcgagagctccggctttaga  9558200                                                                                                 ----          ----------->HVH21                                                                     <----        <---------At4g35610                                                                     <----    --------->HSFB2a(2)                                                           <------ZmHOX2a(1)    <-----------RAV1(1)        <------ZmHOX2a(1)                         <------NtERF2          -----   <---------LBD16 ----------->GT1       --------->AHL20(2)             ------>NtERF2         ------- -------GLK1(2)  <------ZmHOX2a(1)      --------->ICU4                 --------->ETT(2)     <-------- -DOF2  --------->At4g35610  <---------TOE2(3)    <---------RAP2.6(3) ---------->ID1  --------->DOF5.7(2)   gaatttctggggctgaagaggatgtgaaattgaggaacagcgattatttggccgataagacatggttgagttgtcgccatcggaggacgttatcaccgga  9558300    <---------At5g28300  ----------->HVH21 ----->GLK1(2)                                                                --------->TOE2(3) -----ARR14(2)                        --------->bZIP60(2)              <----------DOF2 -----GLK1(2)           <----------DOF2                             <-----------GT1 ---->ARR14(2)     <----------DOF2<-----------GT1                  <-----------GT1 -->LBD16--------->ZAT2<---------ANAC58               *TSS    <------MYB46(1) <----------DOF2 -LBD16  <---------ZAT2<---------ANAC58     <------ZmHOX2a(1) <------MYB83 <-----------GT1          -   atctctcaccgtgctgagaggctttgctttagtttttgacacctcaggacatgtatggatggataggttttaacttttaactttagctagagatggttta  9558400                                                                                                  <--                                                                                                  ---                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                               ------                                                                                               <-----                                                                                    <---------DAG2<--                                                                                    <----------DOF2 -                                                                                  <---------------AGL15                                                                                  --------------->AGL15                                                                                 ====================                                                                                 <-----------------AG                                                       <---------AHL20(2)        <-----------------AGL1       <------MYB46(1)                             --------->YAB1                <-----------------AGL3       ----------->GT1                            <---------YAB1                 <-----------GT1 ----       <------MYB83 --------->AtLEC2              <---------ATHB12             <-----------GT1<------      --------->MYB59                            <---------TOE1(2)        <---------MYB52(1)  ------- ----------->CBF------------>CBF                ------>ZmHOX2a(1)       --------->HSFB2a(2)   -------   agggcaatttggtaaaatagcaatgcaaaggctgagtttttcttattttcctatgattttttttttttttggttctggtattttcactttttgggaacca  9558500       <---------ARR11(3)       <---------AHL20(1)   --------->YAB1  <---------ATHB12 ------>MYB83 ------>MYB46(1) -------MYB55(2) ------>MYB46(3)                  <---------At4g35610 ----->ANAC58                 <-----------GT1 ---->P--------->ARR11(3)  --------->ARR11(3)                 <----------ID1 -->MYB83 <----------DOF2  --------->AHL20(1)           ----------------->AG ----->ANAC58              <---------ICU4               <---------------AGL15 --->AtMYB61               <---------ARR11(3)           ============================================= ----MYB111(1)             <---------AHL20(1)           ----------------->AGL1 -------ATHB12           <---------AHL20(2)            <-----------------AGL1 -------->WOX13(1)       <---------AHL20(1)      <---------MYB52(1)      <---------YAB1 =======================================================================MADS_MADS                 --- -->MYB46(1)            --------->YAB1         <---------ANAC58        --------->YAB1        <------- ---MYB52(2)           <---------YAB1          <---------ANAC58----------->GT1 ---------->DOF2   ---- -->DEAR3(2)        <---------AHL20(2)      <----------DOF2---------->DOF2 <------------CBF  -------- -->MYB46(3)       --------->AHL20(2) <----------DOF2 <-----------GT1  ----------->GT1 <----------ID1   accaatcaatatcttttaaaattttataatattttctgctctttgactttcgttttttaccaaaagggcaaaatggtaattgaaagaagggaacaaatcc  9558600                                                <---------ARR14(2)                                               <------NtERF2                                               --------->ATERF1(1)                                              --------->LBD16                                              <---------ATERF1(1)                                             <---------ANAC46                                             <---------DEAR3(1)                                            <------NtERF2                                            <---------LBD16                                            ------>NtERF2                                            --------->ATERF1(1)                <---------bZIP60(2)        <---------ATERF1(1)          <---------ARR14(2)              <---------DEAR3(1)    <---------YAB1    <---------HSFB2a(2)                  <---------LBD16     --------->ICU4 =============MADS_MADS                 <---------TGA1a    <---------At4g35610 ------------>AGL15   *TSS              <---------O2     <------NtERF2                            <-- --ARR14(2)    <---------TOE2(3)     ----------->HVH21  --------->LBD16                          <--- ----->LBD16 ----------->HVH21     <------ZmHOX2a(2)   <---------ANAC46  --------->AHL20(2)   ------>ZmHOX2a(1) ->ARR14(2)  ----------->TGA1    <---------GLK1(1)    <---------LBD16 --------->YAB1     <----------DOF2   ccagttagagaagaactgacgttgttctaatcgagagatcagacgcggcggagactggcggagatgatgaattcataaattccttcttctcctttcctct  9558700                         <---------GLK1(2)                               <---------ANAC58                        --------->ZAT2                                   <---------ANAC58                        <---------At4g35610                          <---------At4g35610                 --------------------->WRI1                   <-----------ARR10             <---------ANAC58     <---------ICU4             <------NtERF2   <---------ANAC46         <---------WOX13(1)<-------TEIL<---------ANAC58      <---------CCA1(2)       --------->ATHB12 --------->At4g35610---------->ID1  <---------ANAC58  <---------ANAC58      <---------YAB1    <---------ZAT2 <---------ANAC58    <---------ANAC58  <---------ANAC58 --------DOF2<---------ANAC58    --------->ICU4        ------>ZmHOX2a(1)--------->ZAT2              < ---------------------ANAC81 <-----------TGA1 ------>ZmHOX2a(1)      ------>ZmHOX2a(1)     <---------   cttttcatttgattggcttcttacacagcttcgtcatcatgtcttgtcctatccatcctaggcgtctcttcctctgcttgcttatttctctcactttctt  9558800   --------->WRKY38(1)   --------->ETT(2)   <---------ETT(2)   --------->DEAR3(1)                                                                     --------->AHL20(2)   --------->WRKY12                                                                      <---------AHL20(2)  --------->ATERF1(1) <---------ARR14(2)                  --------->ANAC58              --------->YAB1  <------NtERF2       --------->ARR14(2)                  --------->ANAC58         --------->AHL20(2) ---------DEAR3(1)<---------At4g35610                    --------->ZAT18    ----------->GT1 -DOF2   <-----------HVH21   --------->WRKY18(1)    ---------->DOF2 ------->TEIL --------->ICU4   <--   cgtcgtcgacccttcatcgcagcatatcgaggtcaagaagaaacaaatgcgagagaaagtacgcgagatgtatgtaagcagtgatttttatattaattct  9558900  Previous    Next  AGI:  At1g27510.1    Description:  similar to EX1 (EXECUTER1) [Arabidopsis thaliana] (TAIR:AT4G33630.1); similar to EX1 (EXECUTER1) [Arabidopsis thaliana] (TAIR:AT4G33630.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO64344.1) Range:  from: 9554732    to: 9558354    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g27520.1    Description:  glycoside hydrolase family 47 protein. similar to glycoside hydrolase family 47 protein [Arabidopsis thaliana] (TAIR:AT5G43710.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64392.1); similar to hypothetical protein OsI_008710 [Oryza sativa (indica cultivar-group)] (GB:EAY87477.1); similar to hypothetical protein OsJ_008052 [Oryza sativa (japonica cultivar-group)] (GB:EAZ24569.1); contains InterPro domain Glycoside hydrolase, family 47; (InterPro:IPR001382) Range:  from: 9558622    to: 9562368    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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