Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                    --------->TOE1(3)                                              <-----------GT1                                           <---------ZAT6           <---------GLK1(2)                                       ==============================bZIP_DOF                                       --------->TGA1a          <---------MYB52(1)                                       <---------TGA1a    <---------DAG2                                  <---------ZAT18 --------->TOE2(3)<---------At4g35610                                  <---------At4g35610     <----------DOF2 >DOF2                            --------->At4g35610  <-----------GT1              --------->AtMYB61   gcctcatcttaagctataacatagacagtctatttgtgctcacttgtgttacccttaatactttttgttagcttctctctataagaccaatactcaattt  9516800                 <----------DOF2          <---------YAB1                           <---------TOE1(2)        <---------ICU4              --------->GLK1(2)       --------->ICU4              <---------GLK1(2)       <---------YAB1          ---------->DOF2   --------->TOE2(3)                --------->ARR11(3)     --------->YAB1        --------->At4g35610 <---------YAB1               ----------->GT1    <---------YAB1       <---------WOX13(1)<----------DOF2  <---------WOX13(1)    <---------ARR11(3)   ttaagtatgatgattatcggtttttggattgctgaaagaatctctctttatccttggtattgatagatgaataactcatagtaaaatcttgaaatatgtt  9516900                                                              --------->YAB1                                                             <---------AHL20(2)                                                            <---------AHL20(1)                                                            --------->AHL20(2)                                            --------->YAB1  <---------AHL20(2)                                      --------------------->WRI1                                 <------NtERF2              --------->AHL20(1)                 ------                                ------>NtERF2              --------->YAB1                <---------YAB1                               --------->DEAR3(1)         <---------YAB1         <---------REM1(2)                             <-----------HVH21    ------->GAMYB                  --------->ZAT14                    ----------->GT1   <---------MYB52(1) --------->AHL20(2)      <---------ZAT14   ttagagatggattagttaagacttgttaaatcgtcgcccagtttgttcataacgctcattaatataatgaccaatacatcgactacacagtctgataaaa  9517000                                                          --------->ZAT6                                                        <-----------GT1                                                      <---------MYB52(2)                                                     --------->ANAC58                                                     --------->ANAC58                                               ---------->DOF2                                           --------->ANAC55(2)                                           --------->ANAC58                                           <---------ANAC55(2)                                           <---------ANAC55(1)                        --------->HSFC1(2) <---------ANAC58                                     -----                        <---------HSFC1(2) <---------ANAC58             ----------->GT1        <-----                        --------->HSFB2a(1)--------->ANAC58   xxxxxxxxxxxxxxxxx>smallRNA(fl3)--------                        <---------HSFB2a(1)<---------ANAC46  <----------DOF2               ----------                      ---------->DOF2     <-----------------------TaNAC69(2)              --------->ANAC58 --->MYB52(1)      <---------HSFB2a(2)<---------YAB1 ----------->GT1  <---------MYB52(1)  --------->ANAC58   cggatggattagttttgaactcgagaaagttcgaaatgttatgttacgtaagagcaagtaacactttcattcgtttgtaaaacccaaaacagacccaatc  9517100      --------->YAB1     <---------YAB1                   <-----------TGA1   --------->YAB1                     <-----------HVH21   <---------ICU4       --------->ANAC58  <---------ATHB12      --------->ANAC58                      ----------->GT1           *TSS ---->YAB1            --------->MYB52(1)       --------->ALFIN1                         ------------>CBF ----ATHB12        ---------->DOF2--------->YAB1--------->ZAT18                   ------------>CBF--- ->WOX13(1) --------->ANAC46     <---------HSFB2a(1) --------->ANAC58          --------->At4g35610--- -->CBF   --------->MYB52(1)     <---------HSFC1(2)  --------->ANAC58          ----------->RAV1(2)---   ataaatcatcataaacggcccaaaagacggaaggaatcatcgtcactaagtgggcaaacaaaaatggtgaaactgcaaaacacctgcaatttcaattttc  9517200                                                                                                  <--  <---------ARR14(2)            <---------MYB46(3)                                           <-------  --------->ARR14(2)     <---------GLK1(1)                                                   ========  --------->GLK1(2)      --------->bZIP60(1)                                                 -------- <---------GLK1(1)       <---------bZIP60(1)                                                 <------- ------>ANAC46           --------->GLK1(1)              --------->ANAC58              <------ZmHOX2a(2) ------>ANAC58    <---------ZAT14   ------>ZmHOX2a(2)   --------->ANAC58        --------->ANAC46  <-- ------>ANAC58    --------->ZAT18 <---------ARR14(2) --------->WRKY18(1)   --------->ARR14(2)--------   aaggaatccgaaatggagagtggtctgatatcagtggatcgatggagaaatggaagtcaagcctacttcttgactcatatacactccgatcacactcgtg  9517300                                               --------->ABI4(1)                                               ------>NtERF2                                              --------->DREB2C(2)                                              --------->DEAR3(1)            <------MYB46(1)                   ------->GAMYB            <------MYB83                     --------->DEAR4(2)           <---------AtMYB61                --------->ABI4(1)         <------NtERF2                     --------->DEAR3(1)         <-------GAMYB                     <---------ALFIN1       <---------ANAC46                    --------->AtMYB61      <---------LBD16                    --------->SPL7    <---------DEAR3(1)                  <---------ALFIN1   <---------LBD16                      --------->ANAC46 -------ANAC58                        --------->ANAC58                             --------->AtMYB61 --TGA1a<---------MYB46(3)            --------->ANAC58                   <---------TOE2(2) ================MYC_MYB              --------->ANAC46                   --------->LBD16            - ->TGA1a<---------SPL7               <---------LBD16                    <-----------RAV1(2)        <- --O2------>NtERF2              <---------ZAT6<---------ALFIN1         <---------LBD16            <-- -------ANAC58           ------>ZmHOX2a(1)--------->MYB46(3)       <---------MYB52(1)       <-------- ->O2--------->LBD16 <---------ARR11(3)--------->LBD16    <-----------GT1<---------TOE1(2)  <--------   gcctctccggcggatggtcccaaggtcctctctactgttcccgcaccaccgcctctctatttccctcccgtttcccaggtttcgacctctccttgcttcg  9517400                                                    ------>NtERF2                                                   <---------ARR14(2)                                                   --------->PCF2                                                   <---------TCP20 <---------ALFIN1                                                   <---------TCP16(1)                                                   --------->ARR14(2)                                                 --------->LBD16 ------>NtERF2                                                 <---------ATERF1(1) <---------SPL7                                  ------>NtERF2<---------ATERF1(1) -------->DEAR3(1)                             <---------LBD16------>NtERF2 -----NtERF2    ------>ZmHOX2a(1)             ------>ZmHOX2a(1) --------->DEAR3(1) ---------HVH21 --------->LBD16           ------>ZmHOX2a(1)   <------NtERF2                        -- -ANAC58       <---------LBD16     --------->At4g35610      <---------ZAT18                <---------ALFIN1 -ANAC58  <----------DOF2          <---------At4g35610<---------ALFIN1                    --------->MYB46(3)   cgtcgtccctctcttttcctggacatctctctccctccgctctccttcctccggctccacagtccgcctccatctcatggccatcgatgctcaccactgt  9517500                                                                                        --------->TOE2(3)                                                                                       <-------TEIL                                                                                       ------>ZmHOX2a(2)                                                                                      <------ZmHOX2a(2)                                                                                     <---------ARR14(2)                                         <---------DAG2                          <--------P                                         <----------DOF2                      --------->ALFIN1         ---------->DOF2  <---------------AGL15                             <-----------RAV1(1)       <---------YAB1     --------------->AGL15                    <---------ANAC58  --------->ARR14(2)     --------->YAB1      ----------------->AGL3   ----------->GT1  <---------ANAC58<------MYB83    <---------YAB1       <-----------------AGL3   <---------MYB46(3) ----------->GT1<------ZmHOX2a(1) ---->ZmHOX2a(1)         <-----------------AGL2  --------->ALFIN1  <---------ANAC46<------MYB46(1)   cctggtatgataaaagtctaatctatttctatataaggcttcgctttctcagtggtgaaatttgaatttgctggtataatgtggtaggatccataatgtt  9517600                                                      <---------YAB1                  <---------TOE2(2)                --------->GLK1(2)               <---------ANAC46                   <---------GLK1(2)              <---------LBD16                     <---------GLK1(1)            <---------GLK1(1)             <---------LBD16           --------->ARR11(3)         --------->HSFC1(2)     --------->LBD16              --------->ZAT14 --------->ARR14(2)          <---------ALFIN1     <---------LBD16         <---------ZAT14 <---------MYB52(1)            <<<<<<<ZML2    <---------ANAC46         <---------REM1(2)--------->ALFIN1<-----------RAV1(2)    <---------LBD16          --------->ZAT14--------->LBD16  --------->At4g35610    <---------ANAC58        <<<<<<<<<<<<<<<<<LFY  <---------ARR14(2) ------->TEIL        <---------ANAC46    <---------ANAC58     <-----------GT1 --------->MYB52(1)  <---------At4g35610        <---------At4g35610   <---------LBD16<---------TOE1(2)   <---------HSFC1(2)    <-----------HVH21--------->MYB46(3)   tttgttccggggagatttcggatgttttctctacactggagacttccggtgggattctgatgcatcagacgaagctagaaccactctcgttgctgctatt  9517700  Previous    Next  AGI:  At1g27400.1    Description:  60S ribosomal protein L17 (RPL17A). Identical to 60S ribosomal protein L17-1 (RPL17A) [Arabidopsis Thaliana] (GB:Q93VI3;GB:Q9FZJ5); similar to 60S ribosomal protein L17 (RPL17B) [Arabidopsis thaliana] (TAIR:AT1G67430.1); similar to ribosomal protein [Petunia x hybrida] (GB:AAL09401.1); contains InterPro domain Ribosomal protein L22/L17, eukaryotic/archaeal; (InterPro:IPR005721); contains InterPro domain Ribosomal protein L22/L17; (InterPro:IPR001063) Range:  from: 9515122    to: 9516927    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g27410.1    Description:  DNA cross-link repair protein-related. similar to SNM1 (SENSITIVE TO NITROGEN MUSTARD 1) [Arabidopsis thaliana] (TAIR:AT3G26680.2); similar to SNM1 (SENSITIVE TO NITROGEN MUSTARD 1) [Arabidopsis thaliana] (TAIR:AT3G26680.1); similar to SNM1 (SENSITIVE TO NITROGEN MUSTARD 1) [Arabidopsis thaliana] (TAIR:AT3G26680.3); similar to unnamed protein product [Vitis vinifera] (GB:CAO41273.1); contains InterPro domain DNA repair metallo-beta-lactamase (InterPro:IPR011084) Range:  from: 9517188    to: 9519012    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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