Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                              --------->WRKY38(1)                                                                            --------->WRKY45                                                                          <----------DOF2                                                                        <------NtERF2                                                                       <---------RAP2.3(1)                                                                       ------>NtERF2                                               <---------ARR14(2)      <---------ERF1                                          --------->ANAC58            <---------ANAC46                                          --------->ANAC46            <---------DEAR3(1)                                          --------->ANAC58            <---------RAP2.6(2)                                        ------>ZmHOX2a(1)             <---------RAP2.3(3)         ---                                     <------ZmHOX2a(2)                <---------RAP2.3(2)        ---- ---AHL20(2)                      <---------ANAC58                   --------->RAP2.6(3)       <----- ->YAB1  --------->ALFIN1         <---------ANAC58                   <---------LBD16           <-----   acttgatggaggtgttcgacacaaaaacacagacttgcgatcctaagccaatcccttgcagcgagacatttggcggctttgactacaaaactctatgtct  9475800            --------->O2     --------->HSFC1(2)     <---------HSFB2a(1)     <---------HSFC1(2)                                                                          <---     --------->HSFB2a(1)                                                                      <------   ---------->DOF2                                                                    <---------MYB59 ------>MYB52(1)                                            <---------YAB1      <-----------RAV1(1) ------->HVH21   <------ZmHOX2a(1)                       <---------YAB1  --------->ZAT18   --------->AHL20(2) ----ANAC58 <---------O2                         <---------WOX13(1)      <---------ZAT18   --------->YAB1 ----ANAC58 --------->ANAC46                  ----------->ARR10   ---------->DOF2 <---------RAP2.6(2)   tgacggaaagttccacgtaggaccagtacctgttgataaaacaaggattagattggctgattatggtggaaagagggcagttttgtggcctaataatatt  9475900                        <---------ZAT14                        --------->At4g35610                        <---------At4g35610                        --------->ZAT14                        --------->ZAT18                       --------->ALFIN1                     <---------ANAC46                                                     -----------                     <---------ANAC58                                                     <---------ANAC46                     <---------ANAC58                                                 <---------ZAT14                   <---------ANAC46                                                   --------->ZAT14                   <---------ANAC58                                                   --------->REM1(2)                   <------MYB83                                                  <---------ANAC58                   <------MYB46(1)                    ----------->GT1            <---------ANAC58                   <---------ANAC58          <----------ID1                      <---------ANAC46                  <---------AtMYB61       --------->DAG2                    <---------ANAC58              --------->ATHB12           ---------->DOF2                    <---------ANAC58           <---------At4g35610    <---------YAB1     --------->ALFIN1       <---------ANAC46 --------GT1 <---------YAB1    <---------ARR14(2) --------->DAG2     ---------->DOF2 <---------ANAC46 ---ICU4<------ZmHOX2a(1)      --------->ARR14(2)---------->DOF2<---------LBD16<---------MYB46(3)   cactcgcttaggaagatgatttggtgtgcagaggttacgcttgaaaagcgcaaaagtggtgaaatatgggggaaagttgagtggtttgtgtagagtatat  9476000                                                                   --------->YAB1                     --------->TOE2(3)                             --------->AHL20(2)                    --------->ATHB12                               <---------AHL20(2)                    --------->YAB1                             <---------YAB1                --------->AHL20(2)                       <---------AHL20(1)        ----------->GT1     --------->TOE2(3)            --------->AHL20(1)   <---------TOE2(3)<---------ICU4                       --------->ARR11(3)                   ------- ---------->DOF2<---------AHL20(2)                      <---------AHL20(2)          -------->ATHB1 --------->MYB52(1)<---------ATHB12              <-----------GT1  --------->ICU4--------->AHL20(2) >GT1<------ZmHOX2a(1)<---------YAB1      <---------TOE2(3)  ----------->GT1   <---------ATHB12   aagtaaaggatagtttaataaatcattaatccctaattcattctaatgtagtcactatatatattgtaattatatcatctaatgaattattcagccttca  9476100                                                                                  <----------DOF2                                                                            <---------YAB1                                                                         --------->ICU4                                                                         <---------YAB1                                                <---------MYB52(1)     --------->YAB1                                   --------->TOE2(3)            <---------ICU4 <-----------GT1                                   --------->TOE1(3)         --------->YAB1<---------AHL20(1)     <--                          <------ZmHOX2a(2)   --------->ANAC46 <---------YAB1 <<<<<<<<<<GT-3b     ---                     <-----------GT1          --------->RAP2.6(2)    <-----------GT1*TSS        <---- ----->CBF       <----------DOF2   <---------MYB59         <-----------GT1<---------ICU4        <----   atactatatggtatcagagctttaaacgatccctaaacctaaatctagccgctactctgtttttcatcatttttcattatttttctttctcttcaatggc  9476200                                                                    ======================bZIP_DOF                                                                    <---------TGA1a                                                                    --------->TGA1a                                                                    --------->ANAC46                                                                    --------->ANAC58                                                                    --------->ANAC58                                                                    --------->O2                <----                                                     <---------TOE2(3)                         <-----                                               <---------YAB1 ------>MYB46(1)                <------NtERF2 -------At4g35610                            <---------ICU4   ------>MYB83                   -------- ------>At4g35610         --------->MYB46(3)--------->ICU4  <---------MYB59             --------->ALFIN1 -----ANAC58            <-----------GT1 --------->TOE2(3)   <---------MYB46(2) <----------DOF2<------ -----ANAC58    <---------At4g35610    --------->ANAC46  <-----------GT1 ------>ZmHOX2a(1)   --------   ttctgagactgtcattacatctgattcaaccagtcttctcaacgtcaatatgactaatgttaccaaactcacgtcctctaactttctcatgtggaggcgt  9476300                                                        <---------ANAC58                                                ------>NtERF2          --------->AtMYB61                                              --------->At4g35610      --------->YAB1              --                                             <<<<<<<<<AtERF-3         --------->MYB46(3)          <--                                             <<<<<<<<<AtERF-4    --------->ANAC46                ----                                             <---------ATERF1(1)------->PIF5                    <----                                             ------>NtERF2   <---------ALFIN1                   -----                                            <---------RAP2.6(2)--------->At4g35610           <-------                                --------->DEAR3(1)      <---------ANAC58<-----------HVH21  --------->ARR14(2)                           ------>ZmHOX2a(2)<---------DEAR3(1) --------->ZAT2              <---------ARR14(2)       <---------ARR11(3) <------ZmHOX2a(2) <---------RAP2.3(2)----------->RAV1(2)     --------->ZAT18 --NtERF2                <---------ARR11(3) <---------RAP2.3(3)<---------ZAT2          <---------ZAT14 ------HVH21             --------->ARR11(3)--------->RAP2.6(3) ================================RAV<-- ->ATERF1(1)     --------->MYB46(3)      --------->WRKY12<---------SPL7------->GAMYB   --------->ZAT14 ---ANAC46     --------->MYB52(1)        ----------->HVH21 --------->SPL7              <---------ZAT18 ->RAP2.3(1)--------->ANAC46----------->HVH21<---------RAP2.3(1)<-------PIF5       <-----------RAV1(1)   caagttcaagctctactcaacggctacgatctcaccggctacattgacggctccattgtcgtcccacctgcaaccatcactgcaaatggtgcagttacgg  9476400            --------->ANAC58          ---------->DOF2    ==================================HOX2a_HOX2a                                           ---------    ------>ZmHOX2a(1)                          --------->ZAT18                             <---------HSFB2a(2) ------->WOX13(1)                              --------->ZAT14                             --------->HSFB2a(2) -------WRKY38(1)                              <---------ZAT18                         ------>ZmHOX2a(1) ----->WRKY18(1)                               <---------ZAT14                      <------ZmHOX2a(2) -------HVH21                  <------ZmHOX2a(2)                                   <---------ARR14(2) ---->At5g28300               <---------ARR11(3)                                   --------->ARR14(2) --At5g28300--------->ANAC58  --------->ARR11(3)                                   <---------GLK1(2) -------WRKY12       ---------->DOF2      <---------At5g28300                   --------->MYB46(3)  -   tcaatcctgccttcaagcactggcaaaggcaagatcaactcatttacagtgctctactaggcgctatttcaatctcggttcaaccgatcctctcccgaac  9476500                                                                                      --------->ANAC58                                                               --------->MYB46(3)  ==================                                                  --------->At4g35610        ----------->RAV1(1)                        --------->At4g35610       ----------->RAV1(2)    <----------ID1              >>>>>>>>>SARD1                      <---------At4g35610  --------->YAB1 --------->ANAC46              >>>>>>>>>CBP60g                     <---------ZAT2       <---------ICU4 --------->ANAC58       --------->At4g35610                        --------->ZAT2 ----------->RAV1(1) --------->WOX13(1)   <---------ARR11(3)   <---------At4g35610       ===========================RAV   <------ZmHOX2a(2) >LBD16<---------At4g35610   <---------WOX13(1) <-----------RAV1(2) <---------ICU4--------->ARR11(3) ---------->RAV1(1)     <---------ZAT2          =============================RAV  --------->AGP1    <   aacaacatctgctgaaatttggactaagctgatggacacatatgctaaacccagctggtctcacatccaacaattacgacaacagatcaagcaatggaag  9476600        --------->ARR14(2)        <---------ARR14(2)       ------>MYB46(1)       ------>MYB83     --------->AtMYB61    --------->ANAC58               <------MYB83    --------->ANAC58               <------MYB46(1) ======HOX2a_HOX2a              <---------ANAC58                      --------->ANAC58 ------ZmHOX2a(1)               <---------ANAC58  <<<<<<<<<<WRKY26    --------->ANAC58 <------ZmHOX2a(1)   aaggacaccaaatccatcgatgaattcttccaaggcttggtgatgcgatttgatcaactagctctccttggcaagccgatggagagtgaggaacagatgg  9476700  Previous    Next  AGI:  At1g27285.1    Description:  transposable element gene. copia-like retrotransposon family, has a 0. P-value blast match to GB:AAC02666 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana) Range:  from: 9476184    to: 9480503    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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