Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                       --------------->AGL15                                                     <---------------AGL15                                                    <-----------------AGL2                                                    ----------------->AGL2            --------->ANAC58                                                    ----------------->AGL3       --------->ATERF1(2)                        >>>>>>>>>ARR2               <-----------------AGL1       ------->GAMYB <-----                        >>>>>>>>>ARR1               ----------------->AG        --------->DEAR3(2)                       --------->ATHB12             ----------------->AGL1      --------->MYB46(3)                      <---------YAB1            <------ZmHOX2a(1)     <-------TEIL    ----------->GT1 ->GT1        <---------AHL20(2)       ---------->DOF2               --------->CCA1(2)--------->ANAC58   atgagttgagttttgtttatttgtatgattgtaacttataagaaagagaaggattccaaaatgggtagaagattcaaactcaaccggcaagtaaaaatcg  9394600                            <---------WOX13(1)                            <--------P                          <------MYB83                          <---------MYB46(3)                                                       --                          <------MYB46(1)                                                          <-                         <---------AtMYB61                    <---------MYB46(3)                -----                <---------ARR14(2)                 --------->ANAC58                             -----                --------->ARR14(2)             --------->ANAC46                                ------               <---------MYB52(1)    --------->ATHB12         --------->MYB52(2)               <-----               <-----------HVH21    <---------YAB1 --------->ANAC58  <-------PIF5             <------              --------->LBD16      <-----------GT1 --------->ANAC46  ------->PIF5             <------      --------->TOE2(3)  --------->MYB59       --------->ANAC58     <---------ANAC58        --------- -----ID1   <---------LBD16<-------GAMYB       --------->ANAC58     <---------ANAC58      -----------   acaaaaattcttaatccggttactggtttggttgatttttcattgccataagcaagccatacgtttgtggacgtgctaatagttgatgctagtctccgta  9394700        <---------ANAC58  <-------TEIL ------->At4g35610 --------At4g35610 ---->SPL7 ----->DOF2 --->SPL1(1)                                                                              --------->ANAC46 ----SPL1(1)                                                                  --------->GLK1(2)     - ---SPL1(2)         <---------MYB52(1)                                        <-----------ARR10     - ---SPL7<---------ANAC58                                              --------->LBD16     --------->ANAC58 ------>AtSPL3    ----------->GT1               <-----------HVH21    <---------LBD16      --------->ANAC58 ------->SPL14 ------------>MYB.PH3(1)--------->GLK1(2)  ------------>CBF <--------P    <---------ALFIN1   cagctacatagcgttgtaaaccgttacaaatcaaattcagactctgtttccttcacatgaacaattcgattccctggtagaatctaatccccaagccaaa  9394800                                                                                                 ----                                                                                               <-----                                <---------ALFIN1                                              -------                              <---------At4g35610                              <-----------HVH21-----                 --------->ANAC46                                         ---------->DOF2   <--------                --------->RAP2.6(3)              <---------ANAC46     <---------YAB1        <--------           --------->ZAT14   --------->ANAC46    <---------ANAC58   <---------ICU4         --------->WRKY18(1)       <-----------GT1<------NtERF2              <---------ANAC58   <--------HAHB4        <---------- -------->TOE1(3)--------->ANAC58     <---------MYB46(3)           <---------YAB1  --------->ANAC58 -------->TOE2(3)--------->ANAC58  <----------DOF2                 --------->ICU4  --------->ANAC58   aaccctaataaacttcactacggcatcgtttcagccactttggttcaaatttcgtggtatttgtgtccgattattagaaagtgtcacgaccaggtcaacc  9394900                       --------->WOX13(1)                     ------------>CBF                  <---------ARR11(3) ----->LBD16  <---------O2        <---------ARR14(2)                                             ---- ----LBD16    --------->ANAC58    --------->ARR14(2)                                      --------->At4g35610 ->P --------->AGP1--------->GLK1(1)           --------->AHL20(2)                         <---------At4g35610 -->GAMYB     --------->O2 <---------At5g28300 --------->YAB1     <---------WOX13(1)  <-----------HVH21 -WRKY12 --------->ANAC58 --------->YAB1  ------------>CBF       <------------CBF    --------->ANAC46 -WRKY38(1)   --------->ANAC58--------->At5g28300               --------->ATHB12 --------->GLK1(1) -HVH21  --------->ANAC58<---------ATHB12----------->RAV1(1)  <---------WOX13(1) <---------GLK1(1)   ggagacagaactagccacgagatttcaatcacggtgtatcgtccaacaattaaaacaaacccagattgattgattccactgagaaatccgtcagaagcgg  9395000                                                                             <---------SPL7                                                                            --------->ANAC58                                                                         <---------SPL7                                                                       <---------------AtSPL3                                                                      <---------ANAC46                                                                     <---------At4g35610                                                                     <---------ZAT2                                                                    <---------AtMYB61                                                                    --------->ALFIN1                                                                  <---------ANAC58            -------                                                                  <---------ANAC58     <---------MYB52(1)                                                                  <---------ANAC46    <-------GAMYB                                           >>>>>>>>>TBF1       --------->ALFIN1--------->SPL7 -------                   --------->At5g28300  >>>>>>>>>TBF1        <---------ZAT2 --------->ANAC58  <------            <------NtERF2     <---------ZAT2  >>>>>>>>>TBF1  --------->ZAT2--------->SPL7--------->MYB59          ----------------->AGL1 --------->At4g35610         <---------At4g35610  ------------>AtMYB77 ----------------->WRI1       <---------At4g35610            --------->At4g35610 ----------->HVH21---   tttgaaagaatggccgaacacggtgagactcaagctgatgaagaagaagaagaacaagtatggagctggggtgctggtacggacggacagttagggacga  9395100                                                                                    --------->TGA2(2)                                                                                   <-----------TGA1                                                                                   <-----------HVH21                                                                                  --------->ANAC58                                                                                  --------->ANAC58                                                                                  --------->ANAC55(1)                                                                                  <---------ANAC55(2)                                                                                  --------->ANAC55(2)                                                                                  --------->ANAC46                                                                                  <---------bZIP60(1)                                                                                  --------->bZIP60(2)                                                                                  --------->O2                                                                                  ===================                                                                                  <---------O2                                                                                 <-----------STF1                                                                             ------>NtERF2                                                                             <---------At4g35610                                                                             --------->At4g35610                                                                            --------->DEAR3(1)                                                                           --------->ATERF1(1)                                                                           --------->RAP2.3(1)                                                                           <------NtERF2                                                                           --------->DEAR4(2)                                                                          <---------RAP2.3(1)                                                                          <---------DEAR4(2)                                                                          <---------RAP2.6(1)                                                                          <---------ERF1                                                                          ------>NtERF2                                                                          <---------ATERF1(1)                                                                          <---------RRTF1(1)                                                                          <---------ORA47(2)                                                                         <---------RRTF1(2)                                                                         --------->ATERF1(2)                                                                         <---------DEAR3(1)                                                                         <---------RRTF1(3)                                                                         <---------RAP2.6(2)                                                                         <---------DREB2C(2)                                                                         <---------RAP2.3(3)                          <---------GLK1(2)                              <---------ANAC58                         <---------HSFC1(2)                              <---------ATERF1(2)                         --------->HSFB2a(1)                             <---------ANAC46                         --------->HSFC1(2)                              <---------RAP2.3(2)                         <---------ZAT2--------->bZIP60(1)               <---------ANAC58 --------->ZAT2          --------->ZAT2<---------bZIP60(1)              <---------ABI4(1) --------->At4g35610     --------->At4g35610                            --------->ATERF1(1) <---------At4g35610     <---------At4g35610                         ----------------------->TaNAC69(2) -->ANAC58            <---------At4g35610                           <-----------RAV1(1)    <--------- -->ANAC58            --------->LBD16  <---------TGA2(1)          <---------ANAC58--------->TGA1a   < ----ID1             --------->ANAC46  --------->TGA2(1)          <---------ANAC46--------->bZIP60(1) ------->DOF2       <---------LBD16 ----------->HVH21             <---------ANAC58<---------TGA1a   -   caaagctgcaagacgagcttcttccgcagcttctctctctgacatcacttccttccatatcaatgctcgcttgtggcggcgctcacgtcatcgctttgac  9395200                                                                     --------->YAB1                                                                     <---------ICU4                                                                     -------->HAHB4                 --------->RVE1(1)                                  --------->ICU4  --------->ALFIN1                <---------ARR11(3)                               --------->AHL20(2)<-------PIF5                --------->GLK1(2)                                <---------YAB1 <-----------RAV1(2)                --------->ARR11(3)                    --------->ANAC58    <---------DAG2---------->DOF2               <---------GLK1(2)          <---------MYB46(3)     <---------AHL20(2)------->PIF5 =bZIP_DOF------>MYB83                    <------MYB83--------->ANAC46    <----------DOF2 -DOF2    ------>MYB46(1)                 <------MYB46(1)       <---------AHL20(2)<---------At4g35610 ---------HSFB2a(2)                   <---------MYB46(3)        --------->AHL20(2)<---------ZAT2 -------->HSFB2a(2)         ---------->DOF2           --------->ANAC58 <---------YAB1----------->GT1   ttctggtaaacctcccaaaatctctctgatcaaaggaatgttgttggttttagtccaagtaaacattttaattatgctttttgcaggtggtaaagtcttc  9395300                          --------->MYB59                        <---------MYB52(1)                        <<<<<<<<<MYB2                                        ----------->HVH21                        <<<<<<<<<MYB1                                  <----------DOF2                       <-------GAMYB                               <---------CCA1(2)                      --------->MYB52(2)             <----------DOF2------->TEIL                   <-                   <-----------HVH21       ------>ZmHOX2a(1)   <---------ANAC58                    <-              --------->ARR11(3)          --------->TOE2(3)---------->DOF2 <----------DOF2 <---------YAB1          <------ZmHOX2a(1) <------ZmHOX2a(1)  <---------ICU4  <---------ANAC58         <---------MYB52(1)   acatggggaagaggaagctctggtcagttaggacatggagacatcctcaacattactttgccaaagcttgtatctttctttgacgactctgttattactc  9395400                                                  <---------GLK1(2)     --------->ZAT2                               --------->ARR11(3)     <---------ZAT2                               <---------ARR11(3)     <---------At4g35610                     --------->YAB1     --------->At4g35610                  --------->TOE2(3)  --------->At4g35610                    <---------ICU4                                      <-------  <---------At4g35610                   --------->ICU4                              ------>ZmHOX2a(2) <-----------RAV1(1)              <---------TOE2(3)                               <---------ARR11(3) --------At4g35610                <---------TOE1(3)                         --------->ARR11(3) --------ZAT2                    <-----------RAV1(2)      <-----------GT1   <---------ARR11(3)  <----   aagctgctgctggatggagtcattctggttttgtttcaggtaaacattaatagatttttgtaactgatttaagaccaagagcttgatctatctccgtttt  9395500  Previous    Next  AGI:  At1g27050.1    Description:  ATHB54 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 54); nucleic acid binding / transcription factor. Identical to Homeobox-leucine zipper protein ATHB-54 (ATHB-54) [Arabidopsis Thaliana] (GB:Q9LFY2); similar to ATHB-1 (Homeobox-leucine zipper protein HAT5), transcription factor [Arabidopsis thaliana] (TAIR:AT3G01470.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41024.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain Helix-turn-helix motif, lambd Range:  from: 9391877    to: 9394578    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g27060.1    Description:  regulator of chromosome condensation (RCC1) family protein. similar to Ran GTPase binding / chromatin binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G12350.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41023.1); contains InterPro domain Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); contains InterPro domain Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091) Range:  from: 9395010    to: 9396660    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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