Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                 --------->ANAC58     --------->ANAC46     --------->ANAC58     --------->ANAC58   ---------->DOF2 ----->ZmHOX2a(2) ------->GLK1(1)                                                                  <---------ARR14(2) -----ZmHOX2a(2)                                                                  --------->ARR14(2) ------>ARR14(2)                                                                  --------->GLK1(2) -------ARR14(2)                                                    <---------ANAC58 ------>AGP1   --------->ANAC58                                     ----------->GT1 -------ARR11(3)                                --------->ANAC46    <---------ANAC58          ------- ------>ARR11(3)                       --------->ANAC58             <---------ANAC46         <------- -------AGP1   --------->ANAC46        --------->ANAC46  --------->ATHB12        <---------GLK1(2)  - ------CCA1(2) --------->AtLEC2        --------->ANAC58 <---------YAB1<---------YAB1    <---------WRKY12   gatctcaaagcaatcccatgcaatccctcaccaattgaaacacacaattcacgagaacatgatttaagagtcgtgataaacgagaatcggtccaaggtca  9321100     <---------At4g35610     --------->At4g35610  <---------MYB52(1)                                                       <---------ZAT6 <----------DOF2                             ---------->CDC5          --------->YAB1 -->WRKY18(1)                            --------->LBD16             <---------YAB1             <---- ----HVH21     <---------MYB46(3)        ------>NtERF2      --------->ARR14(2)                  <---- -------->TOE2(3)                      <---------LBD16      <---------ARR14(2)       ---------->DOF2   aacctttagctctcaattggttgaaaacagaaaatgctcgctccggctcatcgctaatcgagtaacctctgatcatagtgttgaacataaagagattagt  9321200                             <---------ARR14(2)                             --------->ARR14(2)                <---------ANAC58                          <---------ANAC58            --------->ANAC58                          <---------ANAC58            --------->ANAC58                     --------->ANAC46                --------->DAG2                <---------ARR11(3)                  ---------->DOF2                    <-----------HVH21                --------->ARR14(2)               <------ZmHOX2a(1)  --------->ZAT18    --------->REM1(2)  <----------ARF1<------ZmHOX2a(2)         <---------ZAT14     <---------ANAC58      ------>ZmHOX2a(1) -------RAV1(1) <---------ARR14(2)         <-------TEIL       <---------HSFC1(2)    <---------ANAC58 -----ZAT6      --------->ARR11(3)         --------->ZAT14    --------->HSFC1(2)    <---------ANAC58   gttggagacatgctcgaagatcgacgaagcgtatcgaatgtcaagtacagaggaaaaagcaagaagcttgctcactgcgaaatcgtccttgtcgagtccc  9321300                                  <---------DEAR3(1)       <-------GAMYB                           <---------HSFC1(2)             ------>ZmHOX2a(2)                           --------->HSFB2a(1)          --------->ARR11(3)                           --------->HSFC1(2)           <---------ARR11(3)                           <---------HSFB2a(1)     --------->TOE2(3)                      <---------HSFC1(1)         --------->ARR11(3)             <---------ANAC46                      --------->HSFB2a(2)        <---------ARR11(3)     ----------->HVH21  <-----------GT1     <---------HSFB2a(2)    <---------AtLEC2        --------->GLK1(2)   gttttcaccatgtaaccatgaattcgagaaacttcgacggtgtctctgcaagaccttagatcgttgataagtttctgacattgtggagacaacaacgatt  9321400                                        --------->ANAC58                                        <---------ANAC55(2)                                        <---------ANAC58                                        <---------ANAC58                                        <---------TGA2(1)                                        --------->ANAC55(2)                                        --------->TGA2(1)                                        --------->ANAC58                                        <---------ANAC46                                        <---------bZIP60(1)                              --------->ANAC58                                       ----------->STF1                                  --------->ANAC55(2)                  --------->ANAC58    <---------TGA2(2)                                  --------->ANAC55(1)                  --------->ANAC58   ----------->HVH21                                   <---------ANAC55(2)                  --------->ANAC46   ----------->TGA1                                    --------->ANAC46           --------->ANAC58         <-----------HVH21                             <--------------OsCBT           --------->ANAC46        <---------ANAC58                               <---------KAN4(2)           --------->ANAC58        <---------ANAC58                             <------NtERF2          <---------LBD16          <---------O2                                --------->LBD16        ----------->HVH21          --------->O2                            <---------DEAR3(1)       --------->SPL7       ----------->RAV1(2)                        --------->DAG2    --------->ANAC58      ------>ZmHOX2a(1)    ------>NtERF2--------->bZIP60(1)    ----------->GT1--------->LBD16--------     --------->TOE2(2)    <---------ANAC58               --------->At4g35610 <------NtERF2  <--------     --------->TOE1(2)    <---------RAP2.6(2)  >>>>>>>>>>>>>>>>>LFY   ---------->DOF2   <---------LBD16  --------->GLK1(2)       <---------ANAC58 --------->ARR14(2)---------->DOF2 <---------LBD16--------- <---------GLK1(2)--------->ANAC55(1)<---------MYB52(1)  <---------At4g35610----------------------->TaNAC69(2)   caagattcctacgacggaacacgaaattgcgcctgagccgtgacgtaatcgccaatgtcatcagaaagaaaaaaaagtcgccggaataaacacggatttg  9321500                                                                          ---------->DOF2                                                                    =================================                                                                    =================bZIP_DOF                                                                    <---------TGA1a                                                                    --------->O2                                                                    --------->ANAC55(2)                                                                    <---------ANAC55(2)                                                                    <---------ANAC46                                                                    <---------ANAC58                                                                    <---------ANAC58                                                                    <---------ANAC55(1)                                                                    ================================bZIP_DOF                                                                    <---------O2                                                                    <---------bZIP60(2)         --------->AHL20(2)                 <----------DOF2         --------->TGA1a      --------->TOE1(3)           --------->ANAC55(2)            <---------MYB52(1)      --------->TOE2(3)           --------->TOE2(3)--------->MYB59 <-----------------------TaNAC69(2)    <---------TOE1(3)            <-----------------AGL1          --------->ARR14(2)    <---------TOE2(3)            ----------------->AG            <---------ARR14(2)            ------ ->GLK1(1)                       ----------------->AGL1    --------->ARR14(2)              <--------- -ARR14(2)                <----------DOF2   ==================================bZIP_DOF   <----------DOF2 >ARR14(2)         <------------CBF------>ZmHOX2a(1)       <---------ARR14(2)          <---------ZAT18   ttttttaagcttaaaatatcaaattgggctttagttccttaatgggccttattttggtccaaatccagttacgtggcaaagagaattagggctctttgtt  9321600                                      <<<<<<<<<TBF1  <<<<<<<<<TBF1                                <<<<<<<<<TBF1  <<<<<<<<<TBF1                        <---------ATHB12                     <----------DOF2 *TSS<<<<<<<<<TBF1                             --------->ANAC58                 --------->ANAC58  <<<<<<<<<TBF1  <<<<<<<<<TBF1                    --------->ANAC58                 --------->ANAC58<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------ARR14(2)                 --------->ANAC55(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         --------->WOX13(1)               <-----------GT1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   --------->ARR14(2)       ------      --------->AHL20(2)     <<<<<<<<<TBF1  <<<<<<<<<TBF1         --------->HSFB2a(2)          <----- =bZIP_DOF --------->DAG2  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <---------HSFB2a(2)<---------WRKY38(1) ---->ID1 ---------->DOF2 <<<<<<<<<TBF1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     --------->MYB46(3) -DOF2<---------AHL20(2)<------------------------ANAC81 <<<<<<<<<TBF1<------ZmHOX2a(1)  --------->ANAC46   cttcttatttaaaaaagttacgcctttcttcttcttcttcttcttcttcttcttcttcttcttcatttctaggattcgaaacaacaatcaacgcgatggg  9321700                     --------->GLK1(2)                           <-------TEIL<---------CCA1(2)      --------->At4g35610                                    ----------->ARR10<---------ARR14(2)      <---------At4g35610                     ------>ZmHOX2a(2) --------->ARR14(1)            <------ ----->HVH21       <---------AHL20(2)       <---------ARR11(3) --------->ARR11(1)  <---------ARR14(2) -----ID1  <---------WOX13(1)               --------->ARR11(3) <---------GLK1(2)   --------->ARR14(2)   acgaagtaagcagattgctaaataatctatttctctgaatgtaatcgatcttctatggatagatagattcgttctctgcatatcgtatttgctagggtct  9321800                                        --------->TOE2(3)                                       ----------->GT1                                       --------->YAB1                                    <---------GLK1(2)                                    --------->ARR14(2)                                    <---------ARR14(2)                                   <------NtERF2                                                <----                                  --------->LBD16                                              ------                                 --------->LBD16                                               ------                                <------NtERF2                                                <<<<<<<<                                <---------LBD16                                              <-------                               <---------RAP2.3(1)                   <-----------GT1 <-------TEIL                               ------>NtERF2                  --------->ANAC58    <------MYB83 ------          <---------YAB1      <---------DEAR3(1)              --------->ANAC58    <------MYB46(1)  <-         ------>ZmHOX2a(2)    --------->ETT(2)               <---------LBD16     --------->MYB59<----   <-----------GT1          <-----------HVH21         <---------ANAC58    ------->MYC3  <---------MYB52(1) ---GLK1(1)--------->ATHB12<-----------RAV1(1)        <---------ANAC58    <-------MYC3--------->MYB52(2)   ctgtttttcgatctcattggagacgagttttgtcgccggaatcgtaaattagacttgcttaagctcggaatttacatgtggattaggttcgttttgttag  9321900                                        --------->ATHB12 <---------ANAC58                       <--------HAHB4 <---------ANAC58                       --------->ATHB51 --MYB46(1)                             <---------ICU4 --->MYB46(2)                   <---------O2               --------->ANAC58                      <--- --->MYB111(1)                  --------->O2               --------->ANAC58                      <--- <MYB98                     --------->ANAC58       <---------ANAC58                              <--- --MYB52(1)                 --------->ANAC58       <---------ANAC58                              ---- --->MYB59                 --------->WOX13(1) <---------GLK1(2)                                  <--- ------TEIL              <---------ATHB12     --------->ARR14(2)   <-----------GT1               <--- --MYB83           <-----------GT1     --------->ICU4     <---------LBD16          <----------DOF2  <   gttcagtgtcaaaaatggatttttctaatcactcaagtcgcattattagatttgcttaagctcggaattttacatttggattaggcttttgtttgaattg  9322000  Previous    Next  AGI:  At1g26900.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G12770.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48413.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 9319743    to: 9321461    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g26910.1    Description:  60S ribosomal protein L10 (RPL10B). Identical to 60S ribosomal protein L10-2 (RPL10B) [Arabidopsis Thaliana] (GB:Q08770;GB:Q42327;GB:Q9ZVG7); similar to 60S ribosomal protein L10 (RPL10A) / Wilm's tumor suppressor protein-related [Arabidopsis thaliana] (TAIR:AT1G14320.1); similar to unknown [Populus trichocarpa] (GB:ABK92819.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68740.1); similar to unknown [Populus trichocarpa] (GB:ABK95468.1); contains InterPro domain Ribosomal protein L10e; (InterPro:IPR001197); contains InterPro domain Ribosomal protein L10e/L16; (InterPro:IPR016180) Range:  from: 9321637    to: 9322952    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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