Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                               --------                                                                                            ---------                                   <-----------GT1                                          ---------                         ------>ZmHOX2a(1)                                                  <--------                         <----------DOF2                                                --------->ANAC58                       ------>ZmHOX2a(2)                     --------->ATHB12         --------->ZAT6                     <---------ARR11(3)                     <---------YAB1       <---------REM1(1)                     <---------ARR14(2)                   --------->YAB1         --------->bZIP60(1)                     --------->ARR14(2)                  <---------AHL20(2)      ----------->GT1                     --------->ARR11(3)                 --------->AHL20(2)       <---------bZIP60(1)   --------->At4g35610<------ZmHOX2a(2)                 --------->AHL20(1)       --------->TGA2(1) ------>YAB1        <------ZmHOX2a(1)                   <---------AHL20(1)       <---------TGA2(1) ->WRKY18(1)    ---------->DOF2<---------YAB1     --------->HSFB2a(2)      ------->TEIL --------->ANAC58   gaatgagctataagagcccaaaggatcctttttatgtttaccttgtactcttgtagaatataatgactgagtcgatgaatgtgatgtaacacgaacaatc  9215500                         <------MYB46(1)                         <------MYB83                         <---------MYB46(3)                       <---------MYB52(1)                     <-----------RAV1(1)                     ===========================RAV                  <---------ARR11(3)                                                      --------->ZAT14                  --------->ARR11(3)                                    --------->ANAC46  <---------ZAT18                 --------->RVE1(1)                              <---------ANAC58          --------->ZAT18                 --------->CCA1(1)  ----------->RAV1(2)         <---------ANAC58          <---------ZAT14 ->KAN4(2)     --------->AHL20(2)   <---------O2         --------->GLK1(2)             <---------ANAC46 >MYB46(3)     --------->YAB1       --------->At4g35610  <-----------ARR10       <-----------GT1 ---- >HSFB2a(1)    <---------ICU4       --------->ZAT2       <---------ARR14(2)   <---------ICU4   <----- -KAN4(1)   --------->YAB1          <---------At4g35610 <---------GLK1(2)  <---------ALFIN1    ------   ccaagtggaatttctaataatatctgttggttctcttcacctggctaatatagtttgagaatctctgcttgttccccccatttttactcgagtggactat  9215600                                                                        <-------TEIL                                                                      --------->ARR14(2)                                                            <---------ANAC55(2)                     <----------DOF2                        --------->ANAC46                  ------>ZmHOX2a(2)                         --------->ANAC55(2)                 <---------GLK1(1)                          --------->ANAC58                 --------->GLK1(1)                ----------->RAV1(1) <---------GLK1(2)                 <------ZmHOX2a(2)            --------->GLK1(2)       <---------ARR14(2) ----->YAB1     --------->ARR11(3)           <---------GLK1(2)        --------->ARR11(1) ----ARR11(3)   <---------ARR11(3)       ---------->DOF2    --------->ANAC58 --->ARR11(3)  --------->GLK1(1)       <---------YAB1       <---------ANAC46   cttactcttagcctctgagatctctttgatttcatgagactatcaaagaatcccacatagttacgcaaaacagattcgacttctatcaatggatttgtct  9215700                                    --------->ZAT6                                   <---------ZAT18                                   --------->ZAT18                                   --------->ZAT14   --------->HSFB2a(2)             <---------ZAT14--------->At4g35610                        <-------   <---------HSFB2a(2)         <---------------AtSPL8    --------->DAG2                     ---------   ------>ZmHOX2a(1)           --------------->AtSPL8   ---------->DOF2                     <--------  <---------LBD16           --------->AHL20(2)    <---------At4g35610                       <-------- ----------->RAV1(2)--------->ARR14(2)            <---------ZAT2                     --------->TOE2(3) <---------ANAC46   <---------ARR14(2)        --------->LBD16    ---------->DOF2     --------->YAB1--   atttcctggacgagtaatcttggttctgcataaaatgtacactatttccgagagctgaaaaagtgagaaaagacacttagatttcaatcttaattaacgg  9215800                                                                          ------->MYC2                                                                          -------->ABF1                                                                          <-------MYC3                                                                          <-------MYC4                                                                          <-------MYC2                                                                          ------->MYC3                                                                          ------->MYC4                                                                         --------->ANAC55(2)                                                                         --------->O2                                                                         <---------ANAC55(2)                                                                         --------->TGA1a                                                                         <---------TGA1a                                                                         <---------O2                                                                         ============================                                                                         <--------ABF1     ------->TEIL          <------MYB83                                              ----------->HVH21    <---------ABI4(2)         <---------AtMYB61                                         <---------ANAC46     --------->ANAC58         --------->MYB59                                          --------->At4g35610   *TSS    <---- --At5g28300                       --------->ATHB12              <---------MYB46(3)     --------->ANAC58 >MYB52(1)<------MYB46(1)      <---------AtLEC2            --------->ANAC58             --------->ANAC46 ---GT1<---------MYB52(1)--------->REM1(1)                 --------->ANAC46        ----------->TBP -DOF5.7(2)             ------>MYB46(1)      --------->ALFIN1   --------->ALFIN1  --------->AHL20(2) --------->ARR10        ------>MYB83<------------CBF       --------->ANAC58  ------------>CBF--------   tttgattcggtttggtttgtctcacctacatttgcatcgattgcagcatgggggacttaatacgcagtggctgacacgtgtcaatataaaacgcaccgct  9215900                                                                                   <---------ARR14(2)                                                                                  ===================       --------->KAN4(2)                                                          ===================      <---------MYB46(3) <---------ZAT2                                           <------ZmHOX2a(1)     <---------WOX13(1)  --------->ZAT2                                     ---------->DOF2     --------------->AtSPL8                                              --------->ANAC58         ---    >>>>>>>>>ARR2     --------->LBD16                                    --------->ANAC58         <--   --------->ATHB12  <------NtERF2                                   <----------DOF2              --- ======bZIP_DOF     <---------LBD16             >>>>>>>>>TBF1      <---------YAB1 =================== ------DOF2      <-----------HVH21           >>>>>>>>>TBF1        <---------ARR11(3)          <------ ->DEAR3(1) ------>ZmHOX2a(1)        ---------->DOF2              --------->ARR11(3)          <------   ttgtttgattgttcctccttgtccccgagcagagaaatacaaaggaagaagaagaagagttgtttgattatctttaagcaaagaggaaactgttttgctt  9216000       ===========================HOX2a_HOX2a       <------ZmHOX2a(2)      --------->ARR14(2)      <---------ARR14(2)   ===============================HOX2a_HOX2a   ------>ZmHOX2a(2)  <------ZmHOX2a(2)  ================================HOX2a_HOX2a  --------->ARR14(1)  --------->CCA1(2) <---------ARR11(3) --------->ARR14(2) --------->AGP1 <---------AGP1 <---------ARR14(2) =========HOX2a_HOX2a         ------>ZmHOX2a(2) =============HOX2a_HOX2a    <------ZmHOX2a(2) ------>HSFC1(1)            <---------ARR14(2)                    <---------ARR11(3)             ---- -------HSFB2a(2)           --------->ARR14(2)          <<<<<<<<<CBP60g                       ------- ------>HSFB2a(2)          <------ZmHOX2a(1)            <<<<<<<<<SARD1       <---------YAB1   <------ ========HOX2a_HOX2a   ---------->DOF2                 ------>MYB83<------ZmHOX2a(2)       ---------- ---ANAC58       <---------ATHB12       ----------->GT1------>MYB46(1)       --------->AHL20(2)  <--- ---ANAC58     --------->WOX13(1) <---------WOX13(1)--------->ANAC46         <---------AHL20(2)  ----   ctagatccgatccaatccaatcaaacaaaggatccgattgatcagaaaaaatccaccaaatttctcaagatcgaaacatataattgaagatgagcgacgt  9216100                                             <---------HSFC1(1)                                             --------->HSFC1(1)                                      ------>MYB46(1)                                   --------->MYB46(3)      <---------SPL7              --------->ANAC58 --->TEIL                         --------->ANAC58 -->ANAC55(2)              --------->ZAT2    --------->HSFB2a(2) ---ANAC46                 <---------ZAT2    <---------HSFB2a(2)                  ----------->GT1 ->HVH21--------->SPL7     <---------At4g35610                                   <---------TOE2(2) ------ARR14(2)            --------->At4g35610                                 ------->GAMYB   ------ ----->ARR14(2)      --------->TOE1(2)------>MYB83   <-----------HVH21      --------->MYB52(1) ------   atttgaagggtacgagcgtcaatactgcgagctctcaaccaatctctctagaaaatgtcactctgcatcggttctctccaacggaggtaaaatccagacg  9216200                         <------ZmHOX2a(2)                        --------->AGP1                        --------->ARR14(3)                        --------->ARR11(3)                        <---------ARR14(3)                        --------->ARR14(2)                        <---------ARR14(2)                      --------->ARR14(2)                  --------->ANAC58                       <---------HSFC1(2)          <---------ARR11(3)                             <---------HSFB2a(1)          --------->ARR11(3)                             --------->HSFB2a(1)          --------->ARR14(2)                             --------->HSFC1(2)          <---------AGP1<---------ARR11(3)              ------->TEIL   <-------GAMYB          <---------ARR14(2)                            <---------ARR11(1)                  ---------         <---------ARR14(1)                             --------->ARR14(2)              --------->ZAT2         <---------CCA1(2)------>ZmHOX2a(2)             <---------ARR14(2)              --------->At4g35610      <---------LBD16 ----------->ARR10<---------------AGL15    <---------ARR14(2)      <---------ZAT2 --------->LBD16  --------->ANAC58    <---------MYB59  <---------ARR14(1)               <---------At4g35610 --->ANAC58 ------>ZmHOX2a(2)        --------->ANAC55(2)<-----------ARR10         <----------DOF2 --->ANAC58<------ZmHOX2a(2)       <-----------GT1     <---------CCA1(2) --------->ATHB12 -----------   ctcccgatttcggatcttgaacgcgagatcttcgaatttacctgattttagaaattcgaatcttcgaatttggggttattggagcttttgagctgtgaca  9216300                                                 ----------->HVH21                                                ===============================HOX2a_HOX2a                                                ------>ZmHOX2a(2)                                               <------ZmHOX2a(2)                                               <---------At4g35610                                               --------->At4g35610                                               ================================HOX2a_HOX2a                                              <---------AGP1                                              <---------ARR11(3)                                              <---------ARR14(2)                                              <-----------ARR10                                   <--                                              --------->ARR14(2)                           ------>ZmHOX2a(2)               <---------ZAT18                --------->ARR11(3)                          <------ZmHOX2a(2)       xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     --------->GLK1(2)                          --------->ARR14(2)       --------->ZAT18                       <------ZmHOX2a(1)                           <---------ARR11(3)   <---------MYB46(3)                      <---------TOE2(3)                             --------->ARR11(3)  <---------ANAC46                  <---------ANAC58                                     --------->GLK1(2)  <---------ANAC58                  <---------ANAC46                                --------->TOE1(2)  <---------ANAC58 <----------DOF2  <---------ANAC58                    =========================HOX2a_HOX2a <---------At4g35610             ----------->HVH21                      ==========================HOX2a_HOX2a --------->At4g35610             ======================HOX2a_HOX2a      <------ZmHOX2a(1)<---------ARR14(2) -->HVH21     <---------ZAT6     ------>ZmHOX2a(1)          ----------->GT1--------->ICU4<---------AGP1 >GT1  <---------ZAT18           =====================HOX2a_HOX2a     <---------TOE2(3) <------ZmHOX2a(1)   agtagctggtggactagtgttctttactaatcgtcctgacttgtttaggatctgacgaagttttgtaacatttaggaatgttgagacataggatctgttt  9216400  Previous    Next  AGI:  At1g26665.1    Description:  similar to RNA polymerase II mediator complex protein-related [Arabidopsis thaliana] (TAIR:AT5G41910.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62915.1); contains domain PTHR13345:SF2 (PTHR13345:SF2); contains domain PD331788 (PD331788); contains domain PTHR13345 (PTHR13345) Range:  from: 9214161    to: 9215539    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g26670.1    Description:  ATVTI12/VTI12/VTI1B (VESICAL TRANSPORT V-SNARE 12); SNARE binding / receptor/ soluble NSF attachment protein. Identical to Vesicle transport v-SNARE 12 (VTI12) [Arabidopsis Thaliana] (GB:Q9SEL5;GB:Q9LQY5); similar to ATVTI11/ATVTI1A/SGR4/VTI11/VTI1A/ZIG (VESICLE TRANSPORT V-SNARE 11), receptor [Arabidopsis thaliana] (TAIR:AT5G39510.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN76283.1); contains InterPro domain Vesicle transport v-SNARE; (InterPro:IPR007705) Range:  from: 9215888    to: 9217997    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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