Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100       --------->ALFIN1       <--------ATHB1                  <---------At4g35610   <---------ANAC46         <---------ICU4               <---------ANAC58   <---------ANAC58         --------->YAB1               <---------ANAC58   <---------ANAC58        <---------ATHB12       <-----------ARR10 ------TOE2(3)             --------->ICU4 <---------ANAC58  <---------ZAT2<----------DOF2 --LBD16               <---------YAB1     <---------ANAC58  --------->At4g35610                     < --->RAV1(2)     --------->GLK1(2)      --------->ARR11(3)<---------ZAT18<---------DAG2    --------->ATHB12   aggtagcgtgagggatgagatgctgatcaatgatggtgagaatgtcttggcaaatgttagcgagctcatcttctaccttttggcgataacccttgatttg  9157500                                                                                                   --                                                                                                   --                                                                                                   --                                                                                                  ---                                                                                                  <--                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                -----                                                                                                -----                                                                                               ------                                                            --------->ANAC46                   ------                                                        ===============================HOX2a_HOX2a---                                                        ------>ZmHOX2a(1)                      ------                                                       --------->ANAC46                       <------           --------->ATHB12                  --------->ANAC58    <---------ARR11(3)           -------          <-------TEIL        <----------DOF2--------->ANAC46    --------->ARR11(3)         <-------- -----------GT1   <----------DOF2            --------->ANAC58  ------->TEIL     <------ZmHOX2a(2)----   tttcacgtttgattcattgcctttagactcttctttctgctcgatggacgacattatcctccacgaagctcttcttgctccgatcacgttcttgtaacca  9157600   ----------->RAV1(1) ----->GAMYB ------->DREB2C(2) ------->At1g77200 ------>DEAR3(2) -------MYB55(2) -->MYB46(1) ---->P ----->MYB52(1) ---->MYB55(1)                              --------->ANAC58 ---->MYB52(1)                        <-----------GT1 --->MYB46(3)                  --------->ANAC58                                   <---------ICU4   <- --->AtMYB61                   --------->ANAC58                                   --------->YAB1   -- ------>MYB46(3)            --------->ZAT2  --------->ANAC58               <---------ZAT18 <---------ARR14(2) ->GAMYB                    <---------At4g35610   <---------DAG2           --------->ZAT14 --------->ARR14(2) ---MYB52(2)                <---------ZAT2  --------->ANAC46               <---------ZAT14------>MYB46(1) -->MYB46(3)            <-----------HVH21------->GAMYB              <---------ALFIN1      ------>MYB83 ---GT1 <---------GLK1(2)   --------->At4g35610   <----------DOF2   --------->AtMYB61   <---------MYB59 -->MYB83    ------>ZmHOX2a(1)<---------ZAT18  <---------ALFIN1  --------->ANAC46<-------TEIL  ------   accgacaacagattcctctcttccacagtcagctcgctattaaccctcgccactttcttcatcgtctccaccatctctgcacattcattaccaaatcctt  9157700                --------->AHL20(2)                <---------AHL20(2)               --------->YAB1         --------->ANAC58                           <---------CCA1(2)         --------->ANAC58                          <---------SPL7         --------->ANAC46      ---------->DOF2  <-----------HVH21    <---------GLK1(2)       --------->YAB1   <---------DOF5.7(2)          --------->At4g35610  --------->AHL20(2)      --------->AHL20(2) <---------At5g28300          <---------At4g35610 --------HSFB2a(2)       --------->YAB1     <-----------GT1    <----------DOF2 ------->HSFB2a(2)   ----------->GT1     <---------YAB1       <---------ANAC58 >ZmHOX2a(1)   --------->AHL20(2)     --------->GLK1(2)       <---------ANAC58             ----------   tctataaattctcgcaattaaaatcgaaaataataaagagattatgttaccgtcgtatcgctcggcttgttcggagagcttagccatatagacaaaagtc  9157800                                                                     <---------WOX13(1)                     <---------ICU4                                  <----------DOF2                     --------->YAB1                                --------->ATHB12                    --------->ICU4                              ------>ZmHOX2a(2)                 ------>ZmHOX2a(1)                             <------ZmHOX2a(2)               ------>ZmHOX2a(2)                              --------->ARR14(2)              <------ZmHOX2a(2)                               <---------ARR11(3)             --------->ARR11(3)                               --------->ARR11(3)             <---------ARR14(2)                               <---------ARR14(3)             --------->ARR14(2)                               --------->ARR14(3)           <---------DEAR3(2)                                 <---------ARR14(2)          --------->ETT(1)                                    --------->AGP1        <-----------HVH21                                    <---------GLK1(1)     <----------DOF2<---------YAB1          --------->GLK1(2)--------->GLK1(1)                  <---- >DOF2 <-----------RAV1(1)              --------->YAB1      ----------->ARR10  --------->MYB52(2)   tctctctctttgtcggatcctgatgatgacattttgttccgataataatctgtctgaaaacagagatcttgatttatgggtttgtttgtttgtttgtttt  9157900                                                                                                 <---                                                                                               <-----                                                                                               <-----                                                                                               <-----                                        --------->CCA1(2)                                     <------                         --------->AHL20(1)                                           --------->ANAC58                         <---------AHL20(2)                                           --------->ANAC58                         --------->AHL20(2)                                       <---------MYB46(3)          <---------ANAC58           *TSS                      ----------->TBP    <---------HSFB2a(1)          <---------ANAC58   <---------AHL20(2)         ----------->GT1           --------->HSFC1(2) -----ANAC46      ----------->GT1  ---------->DOF2---------->DOF2 ---------->DOF2 <---------HSFC1(2)   gtgttttgttttccttggtgagataaataaaataatcgaaagagatgggagggaaagagagaaatataaaaagagtttcgaagatggttcgcaaatggcg  9158000                                --------->ANAC46                                                <----                                <---------ALFIN1                                                <----                              <---------ALFIN1                                                -------                         ------>ZmHOX2a(2)                                                  ------->GAMYB                        --------->CCA1(2)                          --------->ANAC46      --------->MYB52(1)                        <------ZmHOX2a(2)                         ------>ZmHOX2a(1) --------->MYB52(1)        <---------GLK1(2)=====================================HOX2a_HOX2a         <---------MYB46(2) ---NtERF2             --------->AGP1                         <-----------GT1     <------------MYB.PH3(2) ----ANAC46            <---------ARR14(2)               <---------TOE1(2)         <---------MYB111(2) ----ANAC58            --------->ARR14(2)              ------>ZmHOX2a(1)          <---------MYB59 ----ANAC58      --------->TOE2(3)                     --------->LBD16            <---------MYB52(2) ---LBD16------->TEIL <---------GLK1(1)               <---------LBD16             <---------MYB111(1)   gaagaagactgaatctcaaccttgagatccgaacacacctctgtgtctgcgaaattcctgggtttttcctcgctattctttctaactaacttaacgaact  9158100                                                                        xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                       xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                       xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                       xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                       <---------REM1(1)                                                                       xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                      xxxxxxxxxxxxxxxx>smallRNA(i)                                                                      xxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                      xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                      xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                      xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                      xxxxxxxxxxxxxxxx>smallRNA(se3)                                                                      xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                      xxxxxxxxxxxxxxxx>smallRNA(s)                                                                      xxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                      xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                      xxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                      xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                      xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                      xxxxxxxxxxxxxxxx>smallRNA(le3)                                                                      xxxxxxxxxxxxxxx>smallRNA(le3)                                                                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                      xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                      *TSS --------->At4g35610                                                                      xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                      xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                      xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                      xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                      xxxxxxxxxxxxxxx>smallRNA(fl3)                                                                      xxxxxxxxxxxxxxxx>smallRNA(si3)                                                                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                      xxxxxxxxxxxxxxx>smallRNA(se3)                                                                      xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                            --------->TOE2(3)            --------->ZAT18                                                       <---------AHL20(2)  <---------At4g35610                  <---------MYB52(1)                   --------->AHL20(2) ------->TEIL   <---------ZAT18              ------>NtERF2                         ------->TEIL      xxxxxxxxxxxxxxxxxxx>smallRNA(le3)             <---------ALFIN1                    <---------ANAC58     xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          --------->ANAC46                       <---------ANAC46     xxxxxxxxxxxxxxx>smallRNA(si3)          --------->ANAC58                       <---------ANAC55(2)  xxxxxxxxxxxxxxxxxxx>smallRNA(se3) <---------At4g35610  <-----------GT1            <---------ANAC55(1) xxxxxxxxxxxxxxxx>smallRNA(i) ------DOF2<-----------TGA1                 <---------MYB46(3) --------->MYB52(1)     xxxxxxxxxxxxxxx -----DAG2--------->ANAC58       ----------->TBP <---------ANAC58 ------->GAMYB       ---------->DOF2 >TEIL  --------->MYB52(1)     ------>ZmHOX2a(1) --------->ANAC55(2) xxxxxxxxxxxxxxxx>smallRNA(s)<---   tttcgctccctaacgacaccgttttatctaatcctatatatgtttttggttacgtatttaaacatcaacggggatgtagctcaaatggtagagcgctcgc  9158200                                 --------->At4g35610                                 --------->GLK1(1)                                ------->TEIL                               <---------ALFIN1                              --------->LBD16                             --------->ANAC46                             --------->ANAC58                             --------->ANAC58               <-------PIF5  <---------ALFIN1               ------->PIF5 --------->ANAC46             <---------LBD16--------->LBD16            xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          xxxxxxxxxxxxxxx>smallRNA(si3)        xxxxxxxxxxxxxxxx>smallRNA(s)        xxxxxxxxxxxxxxx>smallRNA(si3)        xxxxxxxxxxxxxxx>smallRNA(le3)        xxxxxxxxxxxxxxxx>smallRNA(se3)       xxxxxxxxxxxxxxx>smallRNA(le3)       xxxxxxxxxxxxxxxx>smallRNA(s)       xxxxxxxxxxxxxxxx>smallRNA(si3)       xxxxxxxxxxxxxxxx>smallRNA(le3)       xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       xxxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------ANAC58           <---------LBD16 <---------ANAC58       <------ZmHOX2a(2)                                                    <------- x>smallRNA(se3)       --------->ARR14(2)       <---------ATHB12               <----------DOF2     <- -------DOF2xxxxxxxxxxxxxxxx>smallRNA(s)  <-----------GT1                   <----------DOF2--------->YAB1   tttgcatgcgagaggcacggggttcgatcccccgcatctccattttcccactcatttttagacataggcttagatgggcttctttgtagcctcttataat  9158300                                                                                      <---------LBD16                  <---------AHL20(2)                                         --------->O2                  --------->AHL20(2)                   <------NtERF2         <---------O2                 --------->AHL20(2)                   --------->LBD16        <---------TGA1a             <---------AHL20(2)                       <------NtERF2          --------->TGA1a     <---         <---------AHL20(2)                          <---------LBD16        <------NtERF2      ------        <---------AHL20(1)                 <-----------GT1                 <---------RAP2.6(3)-------        <---------AHL20(2)  <---------ANAC58        <---------LBD16      --------->ATERF1(1)  <------  --------->TOE2(3)         <---------ANAC58   <------------CBF       --------->ALFIN1--------->HSFB2a(2) --YAB1 --------->AHL20(2)--------->ARR11(3)  --------->ATHB12      <-----------RAV1(1)     <------ZmHOX2a(1) ----------GT1<---------AHL20(2)  <----------DOF2   <---------ANAC46<---------MYB46(3)<---------HSFB2a(2)   tttaccctaattttttttatttaatttagttcttgtcttttgttttctccattggccgggaaacttatggctgtggccgtcgtgacttctcggaggatga  9158400  Previous    Next  AGI:  At1g26480.1    Description:  GRF12 (GENERAL REGULATORY FACTOR 12); protein phosphorylated amino acid binding. Identical to 14-3-3-like protein GF14 iota (GRF12) [Arabidopsis Thaliana] (GB:Q9C5W6;GB:Q9FZD3); similar to GRF9 (GENERAL REGULATORY FACTOR 9), protein phosphorylated amino acid binding [Arabidopsis thaliana] (TAIR:AT2G42590.3); similar to GRF9 (GENERAL REGULATORY FACTOR 9), protein phosphorylated amino acid binding [Arabidopsis thaliana] (TAIR:AT2G42590.1); similar to unknown [Populus trichocarpa] (GB:ABK94048.1); contains InterPro domain 14-3-3 protein; (InterPro:IPR000308) Range:  from: 9156316    to: 9157937    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g26490.1    Description:  pre-tRNA. tRNA-Ala (anticodon: TGC) Range:  from: 9158170    to: 9158242    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g26500.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G62470.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41868.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 9158367    to: 9159884    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version