Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                 --------->WRKY38(1)                                               --------->WRKY45                                               --------->WRKY12        <----------DOF2                     <---------AtLEC2     <-----------GT1                  <---------ANAC58   ----------->GT1               <-----------GT1 -----MYB83              <---------ZAT6<----------DOF2 --------->YAB1                 <---------CCA1(2) --------ANAC58    ===================HOX2a_HOX2a      <---------ICU4              <----------DOF2 --------ANAC58    ------>ZmHOX2a(2)  <---------ANAC58<---------ATHB51     <---------AHL20(1) -----MYB46(1)  <------ZmHOX2a(1) <---------At4g35610 <---------ATHB12     --------->ARR11(3)     --- ------>MYB59 <---------TOE1(2)<------ZmHOX2a(1)<---------WRKY18(1)        --------->AHL20(1)<-------   tgggttcttactttcttaggatcgatagtcttaggaagatgcttttgcattgaccaataatgtcaaaacctttggaatattttgacttttatcttctttg  9154700                             <---------WOX13(1)                           --------->ATHB12                           <---------AHL20(2)                          <---------AHL20(2)                          --------->AHL20(2)      ----------->GT1    <---------AHL20(2)  ---------->DOF2       --------->YAB1              <---------AHL20(2)    <------ZmHOX2a(1)     <---- ---->TEIL         ------->GAMYB               --------->ICU4        <----------DOF2      ----------- ---DOF2        <-----------GT1            <---------AHL20(2)  <---------AtLEC2 ----------->GT1 -----   aatctaaagagttaaattcaaccctatattaattgattttagttttaaaatgattttatgtttttggatgactttaggaaaaatgttatttgttgtaaaa  9154800                   ----------->GT1            <---------------AGL15            --------------->AGL15    <---------CCA1(2)                                 <-----------GT1 -----ARR11(3)    --------->DAG2       <---------AHL20(2)                                  --------->ZAT18 >GT1<-----------ARR10 ---------->DOF2 <---------YAB1--------->AHL20(2)                --------->ATHB12 ---->ARR11(3)   ---------->DOF2     --------->YAB1  <---------AHL20(2)           --------->AHL20(2)   tctcccaaatctcacttaaaaaagttaaagccatgagatttataattttgtatatttaactaaacaaaattatctaaaaccccttaaaatgagtgcaaaa  9154900                                                                    --------->ALFIN1                                                                    <-----------RAV1(1)                                                                  <---------ANAC58                                                             --------->YAB1                                                             -------->ATHB1                                                             --------->ATHB12                                                             <---------ICU4                                --------->ZAT14             --------->ICU4                                <---------ZAT14             <---------ATHB12                                <---------ZAT18             <---------YAB1                       <---------AHL20(2)                 --------->YAB1                   --------->ANAC58                  --------->ARR11(3)                   --------->YAB1        ---------->DOF2                  <---------ARR11(3)  ---------->DOF2--------->AHL20(2)  <---------------------WRI1             --------->TOE2(3)  --------->ZAT18 <---------ARR11(3)<---------ANAC58         --------->ANAC58          --------->YAB1    --------->ATHB12    --------->ARR11(3)<---------ANAC46  ---------->DOF2   aataacattcaataacattagattttaaaatgagtgcagaaaaagaattagattttaaaataatcattgtgtgtgggatgaaagcacaaagacaaggcct  9155000                        <------ZmHOX2a(2)                        ======================HOX2a_HOX2a                 --------->ZAT14                 <---------ZAT14          --------->ATERF1(1)          <------NtERF2<---------ARR11(3)         ------>NtERF2--------->GLK1(1)         <---------ATERF1(1)         <---------DEAR3(2)        --------->DEAR3(1)        <---------ATERF1(2)        --------->ATERF1(2)                                                                       ---        <---------RAP2.6(2)                ----------->TBP                                        ---        --------->RAP2.6(2)            ------>ZmHOX2a(1)                      *TSS                ---        <---------DEAR3(1)     --------->ANAC58                 --------->At4g35610             -----       --------->DEAR3(2)      --------->ANAC58                 <---------At4g35610           <------ZmHOX2a(2)       --------->ATERF1(1)   ---------->DOF2     --------->ANAC46    <---------YAB1<---------ALFIN1 <   taaatatgggccggcccagttcagagatcaaacaagcactcctgtatatatacacaaatcacaaacagcttatgagaagttttcaacacatttgggatca  9155100                                             --------->ATERF1(1)                                            --------->LBD16                                           <---------ANAC58                                           <---------DEAR3(1)                                           <---------ANAC58         --------->TOE1(3)                 <---------ANAC46                             <---------ZAT18         --------->TOE2(3)                <---------LBD16                               <---------ZAT14 ----------->RAV1(1)              --------->ANAC58                                      --------->SPL7 --------->RAP2.6(2)              --------->ANAC58----------->GT1                       --------->ZAT14 ------>ANAC58                 --------->TOE1(2)<------ZmHOX2a(1)                     <---------SPL7 ------>ANAC46                 <---------SPL7<------NtERF2                          --------------->AtSPL3 ------>ANAC58              --------->MYB52(1)--------->ALFIN1   <------ZmHOX2a(1)  --------------->AtSPL8 ----->DOF2           --------->ALFIN1  --------->ALFIN1   ---------->DOF2        ------------------>SPL14 ----------ID1      <---------ANAC46---------->DOF2  ---------->DOF2          <<<<<<<<<<MYB80   aagccacaaaaccctaaaaaatgggtggaagaacggacgaaagtggcggaggaggtaaagagaaagaggaagagcaagatggtttgtccgtacactctcc  9155200                      ------>NtERF2                     <---------ALFIN1                    xxxxxxxxxxxxxxxxx>smallRNA(se3)                   <---------ATERF1(1)                   ------>NtERF2                  --------->ANAC46                                                             ------                  --------->DEAR3(1)                                                           <-----                  <---------ALFIN1                                                          <--------             ------>MYB83                                                                 ---------->DOF2             ------>MYB46(1)                                                         <---------ARR11(3)           <---------MYB59           --------->ARR11(3)                              --------->ARR11(3)        <-----------GT1  ------>ZmHOX2a(1)                                       ------>ZmHOX2a(1)      <----------DOF2--------->DEAR3(1)           <----------DOF2                --------->LBD16 ---------->DOF2------>ZmHOX2a(1)    <---------ARR11(3)                         --------->TOE1(2)  --   ctgtaaagctttaccttcctccgcctcctctctctccaaggtctctctctctctttctctctatctctctaccatttctgttcctgagattttaaaggtt  9155300           <---------GLK1(1)     <---------TOE1(2)          --------->ARR14(2) ----------->HVH21    --------->ATHB12     --------->At4g35610   <---------AHL20(2)  <------ZmHOX2a(1) <----------DOF2    <-----------RAV1(2) --->ARR14(2)  <---------ANAC58  <---------TOE2(2)      <---------YAB1 ----ARR14(2)  <---------ANAC58 <-----------RAV1(2)----------->GT1                           -------- -TOE2(3) <---------ARR14(2)<-----------HVH21     <---------TOE1(3)               ------>ZmHOX2a(1) ---->ZmHOX2a(1)    <---------LBD16               <---------TOE2(3)            ------>ZmHOX2a(1)   cctcttttattggatttgcttctcaggagcagtcacaggttgaattagagctaaggttattagaagcccttgaaatctatcctcctgttaaactccgagg  9155400                            <---------At4g35610                         <---------MYB52(1)                        <----------DOF2                        ------>ZmHOX2a(1)                   <----------DOF2                      ------>ZmHOX2a(2)               <---------ICU4            --------->YAB1              <---------ARR14(2)                     <---------ATHB12          <---------YAB1              --------->ARR11(3)                >>>>>>>>>>>>>>>>>LFY   --------->YAB1    <-----------GT1 <---------ARR11(3)       --------->At4g35610      <---------YAB1                - ->LBD16     <---------CCA1(2) <-------TEIL  <---------At4g35610    --------->YAB1       --------->ICU4   caagtttcacttctcaaatcttgatcctttagctacgttctatatgcttctgccaatgtttacttttgtatcatgatagttatcagaaaccattatcaaa  9155500                                                    --------->ATHB12                 <---------AtLEC2                                                 <---------ANAC58                   --------->ZAT14                                            <------MYB83                            <---------ZAT14                                            <---------MYB46(3)                   <---------ANAC46                                            <------MYB46(1)                 <---------ICU4                                         <-------GAMYB                     <---------YAB1   <---------ICU4                       --------->MYB52(2)                 --------->ICU4   <--------HAHB4                       --------->MYB111(2)              --------->YAB1   --------->ATHB12                     <-----------RAV1(1)             <------ZmHOX2a(2)   --------->YAB1                       --------->MYB55(2)    <---------At4g35610<---------ANAC58  <---------ATHB12                      <---------MYB46(3)   --------------->AGL15 --------->ALFIN1  --------->ICU4                      <---------MYB52(1)   <---------At4g35610   <---------ANAC58  <- -------->WOX13(1)              --------->YAB1   <---------ANAC58      --------->ARR11(3)   <-------TEIL   tgcaatcatttcaatgtctattgttcttgcacattgatcagtttgttggtttcttgatttcttctgctaatgggatcatgatggtgtgcagggatacatc  9155600  Previous    Next  AGI:  At1g26460.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to MEE40 (maternal effect embryo arrest 40) [Arabidopsis thaliana] (TAIR:AT3G53700.1); similar to Os07g0599000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060186.1); similar to hypothetical protein OsJ_024028 [Oryza sativa (japonica cultivar-group)] (GB:EAZ40545.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 9151719    to: 9154727    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g26470.1    Description:  similar to Os05g0512500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056022.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41875.1); contains InterPro domain CT20; (InterPro:IPR012423) Range:  from: 9155078    to: 9156233    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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