Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           <-------TEIL --------->ID1 ---------TOE2(3) ---------TOE1(3)                                                                      <---------ANAC58 ----------GT1--------->TOE2(3)      ----------->GT1  ------>MYB83                     <---------ANAC58 -------->HVH21------>ZmHOX2a(1)  ------>MYB46(1)     ------>MYB46(1)             --------->TOE1(3) -->ATHB12    --------->TOE1(3)   ------>MYB83       ----------->RAV1(1)          --------->TOE2(3) ->GT1  <-----------GT1  <---------AHL20(2)        --------->MYB46(3)     ----------->GT1        <---   ttgacgttatatacatccttaacttatataaaaaccaagcgtttaaaactaaaaccaacaaaaacacacttgtaagaagaaaaaccatagcatgtccatt  9151300                                                             <---------AHL20(2)                                                            --------->AHL20(2)                                                         <--------ATHB1                                                         <--------HAHB4                                                         -------->HAHB4                                                         --------->YAB1                                                         --------->ATHB51                                                         <---------ICU4                                                        --------->ICU4                                                        --------->AHL20(2)                                                      --------->YAB1                                                    <---------YAB1                       <---------ARR11(3)                                                 <---------AHL20(1)                      --------->ARR11(3)                                                 --------->AHL20(1)                ---------->DOF2                                      <---------AHL20(2)<---------ATHB51          --------->AHL20(2)                                      --------->AHL20(2)<---------YAB1            <---------AHL20(2)                                 --------->AHL20(2) <---------AHL20(2)       <---------AHL20(2)                                 <---------AHL20(1) --------->AHL20(2)       --------->AHL20(2)           <------MYB83----------->RAV1(1) <-----------GT1  <---------AHL20(2)--------->AHL20(2)           <------MYB46(1)   --------->AHL20(2)  --------->AHL20(2)        <----------DOF2        <------ZmHOX2a(1)    <---------AHL20(2)  <---------ARR11(3)     --------->ARR11(3)     ------ ------ZAT18     <----------DOF2 <---------AHL20(2)--------->TOE2(3)    <---------ARR11(3)  <--------   gcacatatgaggaaggtgtctttagcaacatttaaaaaatttaaattacaaaatattaataattaaatgtgagaggtctttaaattaaagacatcttttc  9151400                                                                       <---------ARR11(3)                                                                       --------->ARR11(3)                                                                     <---------AHL20(2)                                                                     <---------AHL20(1)                                                                     --------->AHL20(1)        <-----                                                                     --------->ARR11(3)        <-----                                                     --------->AtMYB61<---------CCA1(2)       -------               --------->ANAC46                   <---------ALFIN1   <---------ARR11(3)       <------               --------->ANAC58            ---------->DOF2        --------->AHL20(2)     <---------AHL20(1)     --------->ARR11(3)                   --------->AHL20(2)     <---------AHL20(2)      <---------AHL20(2)     <---------ARR11(3)                  <---------AHL20(2)   <---------AHL20(2)         --------->AHL20(2) ---------->DOF2          --------->ANAC46<---------AHL20(2) --------->AHL20(2)         --------->AHL20(2) ----------->AGL3<---------ARR11(3)  <---------AHL20(2)    --------->TOE2(3)     <---------AHL20(2) --DOF2        --------->ANAC58      --------->AHL20(2)   <---------ICU4         --------->AHL20(2)   aaaaaaaggtcttcaccaagacatttagacacaatgtttttaatttaaagacacacctaaacattaaataatatatcttctgtttaaatattaaatttta  9151500                                                                --------------->AGL15                                                               <-----------------AGL2      --------->HSFB2a(1)                                      <-----------------AGL3      <---------HSFB2a(1)                                    <---------ARR11(3) ----AHL20(2)                                               <---------CCA1(2) ----YAB1                    <---------AtMYB61            <----------DOF2 -->AHL20(2)               --------->ALFIN1     <---------TOE2(3) <---------YAB1         ---------->DOF2 ---AHL20(2)            ------->TEIL<----------DOF2--------->ALFIN1             <----------DOF2   attgtggaagactccctcatatgatgtatgtgtggtttctttgaaaaatcaaggtttgggctatatctattaatgggctgggctttatactaaaagacta  9151600                                                                                          <------ZmHOX2a(2)                                                                                 <---------HSFB2a(2)                                                                                 --------->HSFB2a(2)                                                                            <------NtERF2--------->ARR11(3)                                                                           <-----------HVH21<--------                                                                           ------>NtERF2 <---------ARR11(3)                                                                           <---------RAP2.6(3)                                                                           <-----------TGA1------>ZmHOX2a(2)                                                                          <---------ATERF1(2)                                                       --------->GLK1(2)  <---------bZIP60(1)     ---                                            <---------GLK1(1)             --------->ATERF1(2)   -----              ---------->DOF2               --------->GLK1(1)             --------->RAP2.6(2)   -----         <------ZmHOX2a(1)      ---------->DOF2<---------ANAC46           --------->bZIP60(1)   -----     <---------ANAC46     <---------HSFB2a(2)  <---------ANAC58         --------->ZAT14  <---------ARR14(2)   <-----------HVH21      --------->HSFB2a(2)  <---------ANAC58      <---------At4g35610 --------->ARR14(2)   aaacatgtcgaggagtcaaagacaacttctgaaaaaaagacatcagatttcttggataatctctaaaatgccactgccgtcatcgagaacagatcgtcac  9151700                                                                                               <<<<<<                                                                                       <---------ARR11(3)                                                                                       <---------ARR11(1)                                                                                       --------->ARR14(2) --------->LBD16                                                                       <---------ARR14(2) ---HVH21                              <---------ARR11(3)                              <-----------ARR10 ------>MYB52(1)                       --------->ARR11(3)                             ------>MYB83 ---->MYB46(3)            ----------->RAV1(2)                                         <---------ARR14(1) ---->ANAC58              --------->At4g35610      --------->TOE1(3)                  ------>MYB46(1) ---->ANAC58       *TSS   <---------At4g35610      --------->TOE2(3)                  <---------CCA1(2)   gaccggagttagtagtgtctaaaaactcatctgagagagaagaactcagaaaaccctaaacacagataaaccccaaaactcaaaaaccaaatctttccaa  9151800                                                                                                   --                                                                                                   --                             <---------ARR11(1)                                                    --                            <---------GLK1(2)                                                     <--                         --------->HSFB2a(2)                                                      ---                        ======================HOX2a_HOX2a              --------->At4g35610     ------                        ------>ZmHOX2a(2)                              <---------At4g35610    -------                       <------ZmHOX2a(2)                               <---------ZAT2         <------              <----------DOF2------->TEIL                    <----------DOF2                  -------          <---------CCA1(2) <---------CCA1(2)                ------>ZmHOX2a(1)             --------->ARR14(2)     <------NtERF2<-----------------AGL1         ---------->DOF2       --------->ZAT2      <---------ARR14(2)   <---------ANAC58    =======================HOX2a_HOX2a <---------ATHB12    --------->MYB46(3)<----   <---------ANAC46   <---------ARR14(2)      --------->TOE1(3)    --------->TOE2(3)   --------------   <---------ANAC58   --------->ARR14(2)      --------->TOE2(3) <-----------GT1 <-----------HVH21 --- <<<<<<<<<<<LFY <-----------GT1        ------>ZmHOX2a(1) --------->ARR14(2)  --------->ANAC46<-------   caatggcgtctcatctctttacccgatctcgaatctctctcctcaaaaccctaaaacccaatccttttacctcagcttcacccatcagagccatttccgg  9151900                           --------->ANAC46                           --------->ANAC58                        --------->At4g35610                        <---------ZAT2                        --------->ZAT2                        <---------At4g35610                                      --------->At4g35610        ==================HOX2a_HOX2a                                            <---------At4g35610        =================HOX2a_HOX2a                                             <---------ATERF1(1)  --------->AtMYB61  ===============================HOX2a_HOX2a                  ------>NtERF2 ------->ANAC58      ------>ZmHOX2a(1)                                       --------->ANAC58 ------->ANAC58    ------>ZmHOX2a(2)                                         --------->ANAC58 ------->REM1(1)  <------ZmHOX2a(2)                                          --------->O2 -----TEIL       --------->AGP1                                              --------->ANAC46 ------>SPL7     <---------ARR14(2)                                        <---------ALFIN1     ----- --->LBD16       --------->ARR14(2)                 --------->MYB46(3)  ------->GAMYB           ----- -------->AtSPL8 <---------ARR14(3)             --------->ANAC46        --------->AtMYB61       ----- ---HSFB2a(2)    <---------ARR11(3)             --------->ANAC58       --------->MYB46(3)   --------- -->HSFB2a(2)    --------->ARR14(3)          <------ZmHOX2a(2)        ------->TEIL          --------- -----MYB52(1)   <---------GLK1(2)          --------->ARR11(3)        -------->P--------->DEAR3(1) -- --->AGL1        --------->ARR11(3)    --------->MYB52(1)   --------->MYB46(3)------>NtERF2 <-------- ------>ZAT14  ----------->ARR10 ------->GAMYB  --------->ANAC58   <---------ATHB12        <---------ARR14(1) --LBD16------>ZmHOX2a(1)  --------->ANAC58--------->At4g35610   --------->WOX13(1)     --------->ANAC46   tacaccattcctctctcaagatcctctgctcgcaaccgaatcaacagatcacgacccatcaaaccatcaatcaacctccacgccgcttccaccgaatcca  9152000                                        <------ZmHOX2a(2)                                        ====================HOX2a_HOX2a                                       <---------ARR14(2)    <------ZmHOX2a(1)                  --------->ARR14(2) ---->ANAC58                          <---------At4g35610 ---->ANAC46                          --------->At4g35610                                   <-------- ---->ANAC58                    <------NtERF2                                           <------------ >ARR14(2)   <----------DOF2  <---------ANAC58       ------>ZmHOX2a(1)              <---------GLK1(1) >GLK1(2)  ------>ZmHOX2a(1)  <---------ANAC58 <---------ALFIN1  ------>MYB46(1)    --------->GLK1(1) --------->RAV1(1)            <---------ANAC46 --------->ZAT6    ------>MYB83 <---------MYB52(1) -ARR14(2) ====================================HOX2a_HOX2a    --------->MYB46(3)  <------ZmHOX2a(1)--   gcaacaggaagtcctctttaccaagagaattggcgtagtccgatcccaaacactccttccttcaaccaatctctagttccattaggatttctaaatcaag  9152100                 --------->ZAT14                                  <---------ARR14(2)                 <---------ZAT18                                  --------->ARR14(2)           <-----------HVH21                                    --------->LBD16        --------->TOE2(1)                                      <---------ANAC58       ------>ZmHOX2a(1)                         <---------ZAT2<---------ANAC58            ----------  <---------At4g35610                            --------->ZAT2<---------ANAC46        <------MYB83 < ------>ZmHOX2a(1)                               <---------At4g35610                   <------MYB46(1) -ATHB12--------->TOE1(1)                        --------->At4g35610                  <---------AtMYB61 ---AGL15 <---------CCA1(2)               ------->TEIL        <---------LBD16        <---------MYB52(1) --------->RAV1(2)                ----------->HVH21      <---------YAB1           <------NtERF2  ----   ctcctgctcctcgtatcagagctctctctgagacgcttgacatgaactcgctgctgaatatgtttgcggattggactgcttcgcagcgttggtctgacat  9152200  Previous    Next  AGI:  At1g26460.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to MEE40 (maternal effect embryo arrest 40) [Arabidopsis thaliana] (TAIR:AT3G53700.1); similar to Os07g0599000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060186.1); similar to hypothetical protein OsJ_024028 [Oryza sativa (japonica cultivar-group)] (GB:EAZ40545.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 9151719    to: 9154727    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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