Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           --------->YAB1   --------->YAB1 ------>ATHB1 ------->ATHB12 ------->ATHB51 ------>AHL20(2) -------AHL20(2)              ------>MYB46(1) ------>ICU4--------->AHL20(2)------>MYB83 -------ATHB51               ----------->RAV1(1)                   ------>MYB46(1) --->AHL20(1)         --------->CCA1(2)               --------->AHL20(2)       <---------ARR14(2) ----AHL20(1)       --------->YAB1                  --------->ANAC58  --------->ATHB12 ----AHL20(2)      <---------ATHB12  <---------ICU4 ----------->GT1------>MYB83--------->ARR14(2) --->AHL20(2)     <---------TOE2(3) <---------ATHB12--------->ANAC58 <---------ATHB12        -------- >YAB1 --------->AHL20(2)   --------->AtMYB61--------->WRKY12    <---------MYB59       ---------->DOF2   attattgataaaaataaactaatgatatgaccaacacaatcagttcgtagacccaagtaaatagataccaaatcagtggcaaattttcagaaagacagat  9103200                                                         --------->MYB52(1)                                                   --------->MYB59--------->ZAT18 --------->AHL20(2)                                             <-----------------AGL1             --------->TOE2(3)                         --------------->AGL15--------------->AGL15             --------->TOE1(3)   -                         <---------------AGL15<---------------AGL15--------->ANAC58    ---------->DOF2                         =====================================MADS_MADS   --------->YAB1            -                        ----------------->AGL1======================================================= --->GT1        ---------->DOF2              <-----------------AGL2--------->ANAC58--------->AHL20(2)   aatagaatagaagacacagaaagtatgccttaagtagaacaaagactactagttagggcaaacgaaggcacactaaaaataacattaaaaaaagaaggaa  9103300                                                                                                   <-                                                                                                   --                                                                                                -----                                                                                                -----                                                                                            ------>ZmHOX2a(2)                                                                                           --------->GLK1(1)                                                                                           <---------GLK1(1)                                        ----------------->AGL1                             <------ZmHOX2a(2)                                        --------------->AGL15                             <---------ARR11(3)                                        <---------------AGL15                             --------->ARR14(3)               <-------TEIL<---------HSFB2a(2)    <---------At4g35610                     --------->ARR11(3)              --------->CCA1(2)        ---------->ID1      --------->MYB52(1)             <---------ARR14(2)   --------->WOX13(1)      --------->HSFB2a(2)    --------->At4g35610                     --------->ARR14(2) -------->ANAC58     <------ZmHOX2a(1) <-----------------AGL1                            --------->GLK1(1) -------->ANAC58  <---------At4g35610  ----------------->AGL1                  ---------->DOF2------- =======================================================MADS_MADS       <------NtERF2    <---------GLK1(1)   ttaagcaattaccaagattcagaggagtactcgaacaatttgcccttatgggagaagacaataagggaaacctcggcatcacaaagaacagagatctcct  9103400                                       --------->ANAC55(2)                                       ================================================MYC_MYB                                   <-----------HVH21                             --------->HSFC1(1)         ========================================bZIP_DOF         ---------->DOF2     <---------HSFB2a(2)  --------->ARR11(3)              -------->P <----------DOF2             --------->HSFB2a(2)  <---------ARR11(3)              ------>MYB46(1) ================================================bZIP_DOF                         ------>MYB83 --------At4g35610      <----------DOF2--------->O2 ------>ZmHOX2a(2)          ------->GAMYB ------->At4g35610      =========================bZIP_DOF                   <-----------GT1 ---->LBD16       <---------ARR14(2)   <---------O2 =====================HOX2a_HOX2a ->ZmHOX2a(1)     <---------ARR11(3)   <---------TGA1a            ------>ZmHOX2a(1)          <------- ---->RAV1(2)     --------->ARR14(2)   <---------ANAC55(2)    --------->ARR14(2) <---------ALFIN1   gagctttcttcaaaagaccagttcttcttttcgagaatgtcacttgtctattgatcttgttctctatcctcttcaattcaaccctaccccttcccatttc  9103500                                                      ===============HOX2a_HOX2a                                                      ------>ZmHOX2a(2)                                                     <-----------------AGL1                                                     <-----------------AG                                                     ===================================MADS_MADS                                                    <---------ARR11(3)                                                =====================HOX2a_HOX2a                                                ------>ZmHOX2a(2)           -------->HAHB4                                               <------ZmHOX2a(2)            <---------ICU4                                               ======================HOX2a_HOX2a                                              <---------ARR14(3)            --------->YAB1                                              --------->ARR11(3)           <---------YAB1                                              --------->ARR14(3)           --------->ICU4 *TSS              --------->AHL20(2)              <---------ARR14(2)          <---------TOE2(3)      <-----------GT1                         <---------ARR11(3)        <---------------AGL15   --------->YAB1                             --------->ARR14(2)        --------------->AGL15 --------->AHL20(2)  ----------->GT1   --------->MYB52(1)     <------ZmHOX2a(1)         ---------->DOF2 --CCA1(2)    <---------AHL20(2)       <---------DOF5.7(2)  --------->MYB59<---------ATHB12         <   tcttaaaataactaaattatatgaagaaaaaacaagagagataacgacgatcttgatctaattaggaaagttttctaatgatggtaatgtgaaagagtgc  9103600                         <---------RVE1(1)                                                        <--                         <---------CCA1(1)                                                        ---                        <---------ARR11(3)                                                  <------MYB83              --------->AHL20(2)                  ---------->DOF2                           <------MYB46(1)              <---------AHL20(2)        <---------MYB46(3)                 ----------->GT1  <--------        <----------DOF2 --------->ARR11(3)    ---------->DOF2        <---------LBD16       <---------AtMYB61 ----------DOF2---------->DOF2       --------->MYB52(1)           <------------CBF        <--------P   ttctttcactctttatttaaagaagagatattttggaaatagcggtttgaaagaaagctataacttggtattggggaaggaaataaaccagagttggttt  9103700           <---------ETT(2)     --------->ALFIN1     <-----------RAV1(1)                                                            XXXXXXXXXXXXXXXXX <------ZmHOX2a(1)                                                                --------------->AGL15 -------HSFB2a(2)  --------->ATHB12                                               <---------------AGL15 ------>HSFB2a(2) <---------YAB1                                          --------->AHL20(2) -MYB46(3) --------->ETT(2)<---------YAB1                                 <---------AHL20(2)     ----   ctaggatgtgttgtcgacttctcattggtctgattagacttccattgcctaatgtcgagtctatgttttctcgtatataattttcaataagtggaacatt  9103800                                      ----------->GT1                                      <---------O2                                      --------->TGA1a                                      <---------ANAC58                     <---------YAB1   <---------ANAC55(1)                  <---------AHL20(2)  --------->ANAC55(2)                 <---------WOX13(1)   <---------ANAC55(2)               --------->YAB1         <---------ANAC58               -------->ATHB1         <---------ANAC46               <--------ATHB1         --------->O2               --------->ATHB51       <---------bZIP60(2)               <---------ICU4         --------->bZIP60(1)               --------->ATHB12       <---------TGA1a              <---------ATHB51        =====================MYC_MYB              <---------YAB1          <---------bZIP60(1)              --------->ICU4         ----------->STF1                                      <---------         --------->YAB1            ----------->HVH21 <---------STY1(2)                 <---------ZAT14    --------->AHL20(2)      <---------O2             --------->At4g35610       ----------->RAV1(1)--- XXX>MIR397A  <---------ATHB12     ----------->TGA1 --------->MYB52(2)     --------->DEAR3(1)    ---- ----->YAB1 --------->YAB1  --------->O2          <--------P ----------->GT1--------->ANAC46     <---   gataaaaaaaataacaataattgattatcgacgtctagtgacgtgaaaatgggttagctagacaagtgaaatatgcacagaccacagacttcagagcttc  9103900                                <---------CCA1(1)                                <---------RVE1(1)                               <---------ARR14(2)                               --------->ARR14(2)                              <------NtERF2                             <---------MYB46(3)                            <---------ANAC46                           <---------LBD16                           <------NtERF2                          <---------RRTF1(1)                          <---------RAP2.3(1)                          ------>NtERF2                          <---------ERF1                         <---------RRTF1(3)      <---------ANAC46   --------->ATERF1(2)                                  <-------GAMYB   <-----------RAV1(1)   <---------RRTF1(2)                                  --------->MYB111(2)   --------->ALFIN1      <---------ATERF1(2)                                 --------->MYB55(2) --------->O2            <---------RAP2.6(2)                               <---------ANAC58 --------->TGA1a         <---------RAP2.3(2)                               <---------ANAC58 <---------TGA1a         <---------DEAR3(1)                               <---------MYB46(3)  ------- <---------O2            <---------RAP2.3(3)       <----------DOF2    --------->ATHB12   <---------AHL20(2) --ARR10                --------->RAP2.6(3) --------->AHL20(2)        --------->ATHB51<---------AHL20(1) ------>LBD16         ----------->HVH21    --------->AHL20(2)        <---------YAB1   --------->AHL20(1) ----->HSFB2a(2)      --------->WRKY12     <---------AHL20(2)        <---------AHL20(2)<---------AHL20(2) ------HSFB2a(2)   <---------AtLEC2  --------->TOE2(3)        <-----------GT1<---------MYB46(3)     -   cccaagtgtcgcattcgatttgcattgacggcggatatttcttaaataattttctttcattttctaactatattattggttgttgatatatattttttgt  9104000                                                    --------->At5g28300                                                    <------NtERF2                                                   <---------MYB46(3)                                                   ----------->GT1                                                   <---------DEAR3(2)                                                 <------NtERF2                                                 <---------------------WRI1             <---------TOE2(3)                 <---------DEAR3(1)            <---------ICU4                   <---------ANAC58      ----------->GT1                        <---------ANAC58   <---------------AtSPL8  <---------AHL20(2)                      <---------WOX13(1)    --------------->AtSPL3    <---------ZAT6 --------->YAB1  <-----------GT1       <---------AHL20(2)      <---------ZAT14    <---------ANAC46 ---->GT1  --------->ICU4              <---------YAB1          --------->ZAT14    <---------ANAC58 -------->AHL20(2)               <---------TOE2(3)<---------DEAR3(1)<-------TEIL  <---------ANAC58   aaataaaaatgtaataatgtaaccaagtagttatagaggttttaattgctcggcggtaagaacagtgaagtacatatagatgtttcttggtagagttgaa  9104100  Previous    Next  AGI:  At1g26310.1    Description:  CAL (CAULIFLOWER); DNA binding / transcription factor. Identical to Transcription factor CAULIFLOWER (CAL) [Arabidopsis Thaliana] (GB:Q9SBH2;GB:Q9SBH3;GB:Q9SBH4;GB:Q9SBH5;GB:Q9SBH6); similar to AP1 (APETALA1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G69120.1); similar to DNA binding protein [Brassica rapa var. communis] (GB:AAS67303.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487) Range:  from: 9100140    to: 9103590    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version