Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  -----                                                                              <---------ANAC55(2)                                                       <---------ARR11(3)     <---------ANAC46  -----                                     ------->TEIL      --------->ARR11(3) --------->AHL20(1)    <----                               <---------AHL20(2)     --------->CCA1(1) --------->AHL20(1)     ------  <-----------GT1          <---------ICU4 <---------AHL20(2)            <---------AHL20(1)     <----- --->TEIL                 <---------YAB1  --------->ATHB12        <---------AHL20(2)        <-------- ---ANAC55(2)           <---------ICU4   --------->AHL20(2)   <---------AHL20(2)            <-------- ---ANAC46              --------->YAB1   <---------AHL20(2)   --------->AHL20(2)            --------- ---YAB1--------->AHL20(2)--------->ICU4<---------AHL20(2)    --------->YAB1  <---------YAB1---------   atatttacaatataaaaaaacaatactcattattttatgtatattaattggacataatatctaattatataaaaaatattatgtatacttacaataaatt  9097600                                                                                             <-------                                                                                          ------>ZmHOX2a(1)                                                                                        ------>ZmHOX2a(2)                                                                                      --------->ARR14(2)                                                                                      <---------ARR14(2)                                                                               ----------->GT1                                                                               ------>ZmHOX2a(2)                                                                               ==================HOX2a_HOX2a                                                                              <------ZmHOX2a(2)                                                                              ===================HOX2a_HOX2a ---->AHL20(1)                                                               --------->ARR14(2) ---->AHL20(2)                                                               <---------ARR14(2) -----AHL20(2)                                                               <---------ARR11(3)   --- --->AHL20(2)                                                                --------->ARR11(3)   --- ----AHL20(2)                                                   --------->ARR11(3)    <---------ARR11(3) -AHL20(1)                                                      <---------ARR11(3)    --------->ARR11(3) -AHL20(2)                     <----------DOF2                 --------->CCA1(1)    ----------->ARR10 >AHL20(1)      <---------ATHB12                 --------->WOX13(1)   <-----------HVH21<------ZmHOX2a(2) >AHL20(2)    --------->WOX13(1)       <---------MYB52(2)      --------->RVE1(1)  ---------->DOF2 ---   aattagagacaacatccaatcaattttgtttttctttggaaacaaacatgtcaatcttcttctaaatatctcagtcacagatcgtaaagatcctactttt  9097700                                                                                                 ----                                                                                   ---------->DOF2---                                                                                ----------->RAV1(1)                                                                             --------->TOE2(3)   ---- --------->WOX13(1)            --------->ZAT14   ---------->DOF2             --------->AtMYB61   ---- ---DOF2               ---------->DOF2   ------>MYB46(1)                     ------->GAMYB      <---- ------>ANAC58      --------->ANAC58     ------>MYB83<------ZmHOX2a(1)      --------->MYB46(3)------- ------>ANAC58      --------->ANAC46    ----------->RAV1(1)                -------->P   --------->GLK1(2) ------>ANAC46      --------->ANAC58  --------->MYB46(3)                  --------->WOX13(1)  <------   aagcaatccatagcagccttacaagtaaagcactattctcaccaacatataaaaaggacatcagtttcagtttaatcaaccacaacaaagtttctgaatc  9097800                                                                                      --------->TOE2(3)                                                                                      <--------------         <---------AHL20(2)                                                           <---------DAG2        <---------ARR11(3)                                                            ---------------        --------->ARR11(3)                      ------->GAMYB                         --------->TOE1(3)        <---------AHL20(1)                   <---------DOF5.7(2)                     ----------------        --------->AHL20(1)                   --------->MYB52(1)                      <---------------       --------->CCA1(2)              <----------DOF2                                <---------------      <-----------------AGL3         ------>ZmHOX2a(2)                               <---------------      ===============================================================================================      --------->ARR11(3)            <------ZmHOX2a(2)                                ---------------- ----->ANAC58                       <---------RVE1(1)                              <-----------GT1  < ------>LBD16                      <---------ARR14(2)                           --------->YAB1      - ----->ANAC58                      --------->ARR14(2)                         <-----------TBP       < ----->ANAC46                      <---------ARR11(3)                       <----------DOF2         - -----LBD16                     <---------TOE1(2)<-----------HVH21          <---------DAG2          < -->ARR14(2)      ----------->GT1  --------->GLK1(2)      <-----------GT1<---------ARR11(3)      ---- ---ARR14(2)      <---------ANAC46 --------->ARR11(3)<---------ANAC55(2) --------->ARR11(3)     -----   cgcaattagatatatttggagcgtaaatgtttccaaggatcttttgttaacggtcacataaaaccatacaattaagaactttttataaccttatttggac  9097900  ------>MYB83  ------>MYB46(1) -AGL15 >AGL15 ->AGL1 --AGL2 --AGL1 --AGL3 =MADS_MADS ->AG<------------CBF ---------MYB55(2)                     --------->ANAC58 -------->AtMYB61             <---------GLK1(1) ---------MYB111(2)           --------->GLK1(1)                                                     - -------->MYB46(3)        --------->ANAC46                                <-----------GT1           - ---------MYB111(1)       --------->ANAC58                             *TSS  ------->GAMYB          - ----->AtMYB61            --------->ANAC58      ------------>CBF<------------CBF                  --- ---->MYB46(3)     --------->PCF2      --------->ANAC58       --------->ARR11(3)              <------   caccaactattgtataactgagtcccacaaggaactccatcaagacatatgtcaatgtcaaaacgatattgttttataaccccatttgttaatctagtgg  9098000                                                                                              <------           --------->ANAC46                             ------>NtERF2 >>>>>>>>>>GT-3b        <-------       --------->CCA1(2)                                <---------RAP2.6(3)             --------->TOE2(3) ---------->GT1                                         ----------->RAV1(1)          <-----------GT1 -------->ANAC58                                       <---------ETT(1)        ------->TEIL--------->YAB1 -------->ANAC58                                       --------->DEAR3(1)  <---------------AtSPL8 ------->DOF2              --------->ALFIN1            --------->RAP2.6(2) --------------->AtSPL8  -- ---ZAT6  <---------LBD16--------->ALFIN1  ---------->DOF2     ----------->GT1 <-------TEIL--------->REM1(1)   gaaagaaatatatgcgcaaggcgagaagtgtggagccatggaccacaaagactatagccgacaaaatgtaagaaaaatatgtacattataccttcatcat  9098100                                                                                             XXXXXXXX                                                                                            ---------                                                                                            <--------                                                                                           <---------                                                                                           ----------                                                                                          --------->At4g35610                                                                                      <----------CDC5                                                                                   --------->LBD16                                                                                 <---------LBD16                                         <---------DEAR3(1)                      ------>ZmHOX2a(2)                                        <---------LBD16                         <------ZmHOX2a(2)     --------->DAG2               <---------YAB1                               --------->GLK1(2)    ---------->DOF2         --------->ICU4 <------NtERF2                       --------->ARR14(2) ---ICU4  --------->At4g35610   -------->ATHB1                  ---------->DOF2<---------ARR14(2) --YAB1   <---------At4g35610   --------->ATHB51       <---------YAB1         <------ZmHOX2a(1) -------->DOF2  <---------ICU4 <---------YAB1   <------ZmHOX2a(1)            ----------->ARR10   ggaaagaaaagcagctactcattgtttataagtattattgtaggcggagaggagactcttattgtctaaagacgaagagaggatccgcgatgagctagaa  9098200                                         ------>ZmHOX2a(2)                                        <------ZmHOX2a(2)           <---------------------WRI1       ---------->DOF2                 --------->ARR11(3)      <---------ANAC46  --------->GLK1(1)                    <---------ARR14(2)     <-------TEIL  <---------GLK1(1)                    --------->ARR14(2)  --------->ZAT2 XXXXXXXXXXXX>MIR832-5P                <---------ARR11(3)  <---------ZAT2 ------>AGL15                    ==============HOX2a_HOX2a --------->At4g35610 -------AGL15             --------->GLK1(1)           --------->ANAC58<---------DAG2                < --------AGL3 >>>>>>>>>SARD1     <------ZmHOX2a(1)    --------->ANAC58<----------DOF2   ---------->DOF2 ------->AGL2 >>>>>>>>>CBP60g    ===============HOX2a_HOX2a<---------At4g35610 ---------->DOF2  <----   atggaaatcgaaagaaatttggaaggggaattcaaggacgggatctacaatctcgcactcaagctgcgtcgactttatgaacaaagacgagaaagagagg  9098300                                                                                    <------ZmHOX2a(2)                                                                                   <---------ARR11(3)                                                                                  <---------At4g35610                                                                  <------ZmHOX2a(1)--------->ARR11(3) ---------MYB46(3) ---------->DOF2                                =========================HOX2a_HOX2a --ZmHOX2a(1)   --------->YAB1                         ---------->DOF2     <---------YAB1      >>>>>>   agttgttcgatgtttcaatgagaaagagcaagagagtattggaggtgaacataaatataaagatggaaggagataccaagattgagatcacagagaagaa  9098400                                   --------->ARR14(2)                   ----------->GT1                        ---------->DOF2                            <------MYB46(1)                    <----------ID1 --------->GLK1(2)               <------MYB83             ---------               ---------->DOF2     <---------ARR14(2)             <---------MYB46(3)      ---------->DOF2             ------->GAMYB--------->DAG2                         <---------MYB52(1)  ---------->DOF2 >>>TBF1  --------->MYB52(1)   <------NtERF2    ---------->DOF2  <---------MYB55(1)<------ZmHOX2a(1)   gaaggaagtagacaacgaaaagacgaaaaaggcagagaattcggacaagagaaagaagtttgtagcagttggtgaagataaaacaggaaaagaaaagatg  9098500  Previous    Next  AGI:  At1g26300.1    Description:  BSD domain-containing protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G69030.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN73547.1); contains InterPro domain BSD (InterPro:IPR005607) Range:  from: 9095887    to: 9099741    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g26290.1    Description:  unknown protein Range:  from: 9097971    to: 9098654    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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