Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                 <-----------GT1                          <---------ICU4                  <----------DOF2------>ZmHOX2a(1)                                     <------ZmHOX2a(2)         <---------MYB52(1)      <---------MYB52(1)                                   <---------ARR11(3)         <<<<<<<<<MYB98         --------->TOE1(3)                                     --------->ARR11(3)     --------->GLK1(1)          --------->TOE2(3)                                    <---------At4g35610    <---------ARR14(2)      --------->GLK1(1) --------->WRKY12                <---------TOE2(3)    --------->ARR14(2)      <---------GLK1(1) --------->WRKY38(1)           <---------AHL20(2) ---------At4g35610    <---------AtLEC2       ----------->HVH21            <---------YAB1           <   tcatcggatttgttaggcttcttttgtatgaaatccttagttttgcatttgaccatttctcaaaacaccctaacatttttaatgttcagatcatggctgt  9086700                    --------->YAB1                  --------->ARR11(3)                 <---------ICU4                 --------->YAB1                --------->ICU4                                     <----------DOF2               <---------TOE2(3)                   <---------ARR14(2)             <---------AHL20(2)                    --------->ARR14(2)         <---------YAB1                       --------->ALFIN1     <---------DAG2   --------->ICU4-------->HAHB4             <---------ANAC58    <---------ARR11(3)  <---------TOE2(3)<---------YAB1           <---------ANAC58   <------ZmHOX2a(1)                    < ---------AHL20(2)<---------ARR11(3)        <---------ANAC46<---------LBD16 <-----------GT1        <-   gtttaatgtttatgtttaatgatcataagctctgtttttaatgcaagcgtgggtatatgaattcaggaactttttttttttcattcttcttaaactcgtt  9086800                                               <---------At4g35610                                               --------->At4g35610                                        <---------ICU4                              --------->ANAC58                                        --------->ATHB12                            --------->ANAC58                                       <---------YAB1                      <---------DAG2  --------->ZAT6                      <----------DOF2                      <----------DOF2 -----------GT1              ------->GAMYB    ----------->RAV1(1)     ---------->DOF2               - ----------GT1  ---------->DOF2     --------------->AGL15            <---------ATHB12         -------   tttaactctccatctctaaaaagaccatcaacgctcttctctttattgcagcagaaacagaacccagttcaataaagctttttggtaagaaaatttgaaa  9086900                                                                          <---------GLK1(2)                                                                         -------->HAHB4                                                                         <--------ATHB1                                                                         <---------ICU4                                                                        --------->ICU4                                       --------->ARR14(2)             <---------ICU4     <---------RVE1(1)                 --------->GLK1(2)             --------->ICU4     <---------CCA1(1)                 <---------ARR14(2)        --------->ANAC58    --------->ARR11(3)                <---------GLK1(2)      <---------At5g28300    <---------ARR11(3)             --------->ANAC58         <-----------GT1     <----------DOF2    --------->AHL20(1)             --------->ANAC58     <----------DOF2 <---------YAB1    <---------AHL20(1)        --------->ALFIN1          <---------DAG2--------->YAB1 --------->DOF2            --------->DAG2         ----------->HVH21--------->YAB1               ----- --->DOF2                 ---------->DOF2      --------->GLK1(2) --------->ANAC58         <---------ICU4   ggaaaagatatttgaaaactcgtagagagaaagtggcacagaatctgaaattctgacactttttaccacgaataatgattctcttttgaaaaacatgact  9087000                                                                     <---------WRKY18(1)                                                                     XXXXXXXXXXXXXXXXXXX>MIR3434                                                                    --------->WRKY45                                                                    --------->WRKY12                                                                    ----------->HVH21                                                                    --------->WRKY38(1)                                                                   --------->DOF5.7(2)                                                                   <---------MYB52(1)                                                                  <-------GAMYB                                            ---------->DOF2    -------->P     <-----------GT1          <---------ARR11(3)     --------->MYB52(2)            <---------At5g28300 <----------DOF2       <----------DOF2      <---------TOE1(3)           <---------DAG2    <---------GLK1(2)     <---- ------->CBF <----------DOF2<---------TOE2(3)           <----------DOF2<---------WOX13(1)  *TSS <----   caatgttttctttatctttttctctgaattaaggtttgtttgtacttaaagtatgctcctttatctaccgttgactgattctactcttttattctcaact  9087100                                          <---------ANAC46                                      <---------ANAC58                         <----------DOF2                                      <---------ANAC58               <---------YAB1    <-------------          <---------ANAC58          --------->ARR11(3)             --------->YAB1      -------------- -----DAG2<---------ANAC58     --------->TOE2(3)             --------->ANAC55(2)       <----------DOF2 ------DOF2    <---------TOE1(2)------>ZmHOX2a(1)         <-------TEIL   --------->ALFIN1          --   tttctctgatttgctcgtgtgtttacttcaattcctcagttcttgtgtagaaagttgagtttcatgtgatcaaaattggggctttactacttttaagaga  9087200                                                                                         ------>ZmHOX2a(1)                                              --------->ANAC58                      <---------ANAC58                                              --------->ANAC46            >>>>>>>>>>>>>>>>>LFY                                              --------->ANAC58           --------->ARR14(2)                                      ----------->GT1               --------->LBD16 <------MYB46(1)                                      <------MYB46(1)             <---------------------WRI1                                 <------ZmHOX2a(1)                <---------LBD16   <---------ANAC58                       ---------->DOF2<------MYB83               ------>ZmHOX2a(1)  <------MYB83      ---------->DOF2--------->LBD16 --------->MYB59         <---------ARR14(2)    --------->MYB59  ----------->HVH21  <---------RAP2.6(3) <---------WRKY38(1) --------->ARR14(2)    <---------MYB46(3) --AGL15             ------>NtERF2--------->ARR14(2)   <---------ARR14(2)--------->GLK1(2)       <--- ->AGL15            --------->RAP2.6(2) --------->WRKY18(1) <---------CCA1(2)  <-----------RAV1(1)  < ------->ATHB12    <---------LBD16<---------ARR14(2)   --------->ARR14(2)<---------ARR14(2)    <-----   atgagtgacaaagacgagtttgccgcaaagaagaaggatttggtcaatacgccagtggatttgtatcctccggagaatccaatgttgggtccttctccga  9087300                                                                                    <---------YAB1                                                                                    --------->AHL20(1)                                                                                    <---------AHL20(2)                                                                                   --------->AHL20(2)                                                                               <---------YAB1                                                                               --------->ICU4                                                                   --------------->AGL15                                                                   <---------------AGL15                                                                  <-----------------AGL1                                                              --------->HSFC1(2)<---------ICU4                                                              <---------HSFC1(2)--------->YAB1                                   <---------MYB46(3)   <-------TEIL<----------DOF2--------->YAB1                               <---------AtMYB61     <---------At4g35610  ----------->GT1     <-------TEIL           --------->ICU4           --------->At4g35610 <---------ZAT6 ------ATHB12               <---------YAB1       <---------ALFIN1 ----------------->AGL1 ---------WOX13(1)        <---------AtLEC2       --------->ANAC46 <-----------------AG       <------- ----At4g35610       <----------DOF2            <---------REM1(2) ----------------->AG<---------ICU4   tgatggattcattcagagaaactctttggcatgatggtggtttcaatgtccacacagatgcagacacttcctttagaggtaataataatattgatatacc  9087400                                          <---------ARR14(2)                                          --------->ARR14(2)                                         <------ZmHOX2a(1)                                     <-------TEIL      <---------At4g35610                                    --------->GLK1(2)  --------->At4g35610                                   <---------ARR14(2)  <---------ZAT2             <---------ANAC46                                   --------->ARR14(2)  --------->ZAT2<----------DOF2     --------->ICU4                              --------->AtLEC2        --------->ALFIN1            ----------->GT1                            <---------ANAC58         --------->ZAT18 <---------------AGL15         --           <------MYB46(1)  <---------ANAC58        <---------ANAC58 --------------->AGL15  ---------           <------MYB83     <---------ANAC46        <---------ANAC58<-----------------AGL3  <--------         <--------P     --------->At4g35610  --------->ATHB12       <-----------------AGL2--------->YAB1 ----GT1<---------ANAC46<---------At4g35610 <-------TEIL    ---------->DOF2      --------->ALFIN1 ---   tcttgaaatgggttggaatatggctcagttccctgcagattcaggattcattgagcgtgctgcaaagttttctttttttggatgtggtgaaatgatgatg  9087500            <---------CCA1(2)          <---------ICU4              <---------ANAC58                   ==========================HOX2a_HOX2a         <---------ATHB12          ------->GAMYB                 ==============HOX2a_HOX2a       --------->WOX13(1)        <---------At4g35610             ------>ZmHOX2a(1)   --------->MYB46(3)            --------->At4g35610             ===============HOX2a_HOX2a  ------>MYB46(1)             <-------TEIL                   --------->GLK1(2)  ------>MYB83              --------->ARR14(2)       --------->CCA1(2)   ------>ZmHOX2a(2) ----------->RAV1(1)        <---------ARR14(2)      --------->ARR14(2)  ===========================HOX2a_HOX2a ------->MYB46(3)    --------->GLK1(1)<---------ANAC58      <---------GLK1(2) >ICU4 --------->YAB1<---------GLK1(1)<---------ANAC46<-------TEIL      <------ZmHOX2a(2) -YAB1--------->MYB46(3) <---------HSFB2a(2)        <---------ARR11(3) <---------ARR14(2) ---->TEIL--------->YAB1 --------->HSFB2a(2)        <---------ARR14(2) --------->ARR14(2)   ------>ZmHOX2a(1)   aaccaacaacaatcatctcttggagttccagattcaactggcttgtttcttcaagatacacagattcctagtggatccaaactagataatggtcctctta  9087600  Previous    Next  AGI:  At1g26260.1    Description:  basic helix-loop-helix (bHLH) family protein. similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT1G68920.2); similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT1G68920.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15348.1); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) Range:  from: 9087091    to: 9089365    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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