Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                <---------MYB52(1)                                            xxxxxxxxxxxxxxxx>smallRNA(i)                                            <---------ANAC58                                            <---------ANAC55(2)                                            <---------ANAC58                                            ----------->GT1                                          xxxxxxxxxxxxxxxx>smallRNA(i)                                         --------->ARR14(2)                                         <---------ARR14(2)                                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                    --------->GLK1(2)                                   <---------ARR14(2)                                   --------->ARR14(2)                                   xxxxxxxxxxxxxxxx>smallRNA(i)                                   <xxxxxxxxxxxxxxxxsmallRNA(s)                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   <------NtERF2                                 xxxxxxxxxxxxxxxx>smallRNA(s)             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                              xxxxxxxxxxxxxxxx>smallRNA(i)              --------->bZIP60(1)    ------                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <---------bZIP60(1)   -------                             <---------DOF5.7(2)                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                            ----------->HVH21<-------GAMYB           ----------->HVH21   ------>NtERF2                            --------->WRKY38(1)                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                            --------->WRKY12--------->ANAC55(2)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                            xxxxxxxxxxxxxxxx>smallRNA(i)             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                            xxxxxxxxxxxxxxxx>smallRNA(s)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <---------O2        <xxxxxxxxxxxxx                           --------->DOF5.7(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <xxxxxxxxxxxxxxx                           xxxxxxxxxxxxxxxx>smallRNA(s)            --------->O2     <xxxxxxxxxxxxxxxx                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                          xxxxxxxxxxxxxxxx>smallRNA(s)           --------->LBD16    <xxxxxxxxxxxxxxxx              <---------CCA1(1) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)              <---------RVE1(1) xxxxxxxxxxxxxxxx>smallRNA(s)    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      --------->At4g35610 xxxxxxxxxxxxxxxx>smallRNA(i)      --------->KAN4(2)      <xxxxxxxxxxxxxxxxx      <---------At4g35610xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      <-------GAMYB      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <-----------RAV1(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <-------TEIL       xxxxxxxxxxxxxxxx>smallRNA(i)         <---------KAN4(1)       <xxxxxxxxxxxxxxxxx  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) -------->LBD16    xxxxxxxxxxxxxxxx>smallRNA(i)            --------->KAN4(1)      <---------AHL20(2) -------LBD16--------->ARR11(3)--------->ANAC46        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxx >AtSPL8     <---------ARR11(3)xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) >AtSPL3     <---------GLK1(2)xxxxxxxxxxxxxxxx>smallRNA(s)<---------KAN4(2)      --------->AHL20(2)   tccggttcagttgaagattttttgttcacgttgacgcgattcggttccgttacaagtgagattattccgaagtgacatcaacatttaatgcccccaaaaa  9005100                                                                         <--------ATHB1                                                                         <--------HAHB4                                                                         --------->ATHB51                                                                         <---------ICU4                                                                        --------->ICU4                                                                        <---------ATHB51                                                                        <---------YAB1                                                                        --------->AHL20(2)                                                                      <---------ICU4                                                                 <---------YAB1                                                               -------->ATHB1                                                              --------->AHL20(2)                                                              <---------AHL20(2)                   <--------HAHB4                             <---------YAB1                  <---------YAB1                              --------->AHL20(1)                  --------->ICU4    --------->YAB1            --------->ICU4                --------->YAB1      <---------ICU4         <---------AHL20(2)       --------->AHL20(1) --->DAG2      <---------YAB1       --------->ATHB12       --------->AHL20(2)   <---------AHL20(2) --->DOF2<---------YAB1             <--------HAHB4        --------->AHL20(2)<---------AHL20(2) xxxxxxxxxxsmallRNA(si3)<---------TOE2(3)                 <---------AHL20(2)--------->AHL20(2)   ---- xxxxxxxxsmallRNA(s2) --------->AHL20(2)               <---------AHL20(2)--------->YAB1      <------- xxxxxxxsmallRNA(i2)  <---------AHL20(2)  --------->TOE2(3)--------->AHL20(1)   --------->AHL20(2) xxxxxxxsmallRNA(le3)<---------YAB1<---------YAB1      --------->AHL20(2)-------->HAHB4     <xxxxxxxx xxxxxsmallRNA(le3)<---------ICU4<---------ICU4   --------->AHL20(1)  --------->YAB1--------->AHL20(2) xxxxxsmallRNA(si3)--------->ATHB51--------->ICU4--------->AHL20(2)--------->YAB1   <---------AHL20(2) xxxxxxxxxxxxxx>smallRNA(si3)    --------->YAB1  --------->YAB1<---------ICU4   <---------AHL20(1)xxx   gtttagatgtgactattgtcataattaatgaaaaatcatcattacatcaaataatattaaaaaaattattaataataattaaaaaattttttgttgagat  9005200                         --------->ATHB12                         -------->ATHB1                         --------->ATHB51      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                        --------->ICU4       <---------At4g35610                        <---------YAB1       --------->At4g35610              <------ZmHOX2a(1)            <---------RAP2.6(2)           <---------LBD16xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)             <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        ------->TEIL    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)  ------>ZmHOX2a(2) ------>DOF2--------->LBD16          <-------TEIL           --------->ARR11(3) --TOE2(3)--------->TOE1(2)      <---------------AtSPL8     <---------ARR11(3)             <---------ANAC58 xxxxxxxxxxxxxxxsmallRNA(fl3)    --------------->AtSPL3<---------ZAT6<---------------AtSPL8<---------ANAC58 xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  ------->TEIL      --------->ALFIN1    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   aaagaagatgaacccaggaacaaagaattattgagaacgtacattgctgctgaagaagtgttgatcttgtttttgtaccaagtttggagcattgctcgtg  9005300                                                <xxxxxxxxxxxxxxxxsmallRNA(i)                                                --------->ATHB12                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                               <---------YAB1                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                             ------>ZmHOX2a(2)                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                            <------ZmHOX2a(2)                                           --------->ARR14(2)                                           <---------ARR11(3)                                           <---------ARR14(2)                             --------->GLK1(2)                                           --------->ARR11(3)                 <---------GLK1(2)                                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <---------ARR14(2)                                           <---------ARR14(3)       --------->AHL20(2)    --------->ARR11(3)                                           --------->ARR14(3)       <---------AHL20(2) <xxxxxxxxxxxxx                                          <------ZmHOX2a(1)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)            <----------DOF2               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------->ARR14(2)         <---------ARR11(3)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         --------->ARR11(3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   --------->YAB1 <---------ARR11(3)   taagtaatgaagttcttttaagaagttttttttatgtcatattaggatcttgattgtgttcgaactccatttttttatcagaatatttgcaaaatctata  9005400                                   <---------TOE1(3)                          <---------WOX13(1)                        --------->ATHB12                        <---------ICU4                       <---------YAB1          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                     --------->YAB1--------->MYB59<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)           <xx                    <---------ATHB12      <---------YAB1          <---------MYB52(1)           <-----               <<<<<<<<<<WRKY63    <---------TOE2(3)    --------->ETT(2)                       <-----             ----------->GT1    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    <-----------TBP       ------ xxxxxxxxxsmallRNA(se3)--------->ICU4    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      ----------->GT1   tttgtttgtttaaaatagtcaaatgataattggtatttaggtttataaatgtgtagtatcgacattccatttgttttttatatgtatagtatttttcagt  9005500                                     <-------GAMYB                                    <------MYB46(1)                                    <------MYB83                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                   <---------MYB46(3)                                 <-------PIF5                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                 ------->PIF5                                 <---------MYB52(1)                                --------->ZAT2                                xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                <---------ZAT2                               xxxxxxxxxxxxxxxx>smallRNA(i)                              <-----------RAV1(2)                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                      <---------AHL20(2)     <---------GLK1(1)                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                 --------->LBD16<---------At4g35610                 ------>ZmHOX2a(1) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                      <---------ANAC46           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         <-----------GT1           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)       <---------ARR14(2)    <---------ARR14(2)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      --------->ARR14(2)    --------->ARR14(2)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    --------->LBD16   --------->MYB55(2)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)--------->KAN4(2)    <------MYB46(1)---------->DOF2        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)  <----------TaMYB80    <------MYB83--------->AtLEC2        <---------ANAC58   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <---------DEAR3(2)        --------->ALFIN1 <---------YAB1      <---------KAN4(1)    --------->MYB46(2)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) *TSS   --------->ANAC55(2)<---------MYB46(3)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <---------ARR14(2)    <---------DEAR4(1)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  --------->ARR14(2)    <---------DEAR3(1)   <---------AHL20(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        <---------MYB46(3)  --------->AHL20(2) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <---------TOE2(3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   <---------TOE1(3)<---------At5g28300xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxx>smallRNA(i)   <---------DREB2C(2)          ------ ----At4g35610 ----------->RAV1(2)<--------P--------->ARR11(3)    --------->MYB55(2)          xxxxxxx --GAMYB<---------ANAC58<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --->At4g35610 --------->At4g35610--------->ALFIN1<---------LBD16<---------ORA47(1)      <------ZmHOX2a(1)   tgcatttaatgtgtgtctcctgaatttatgatgcaggtgggttatggatattcccgtatttaccatggtcggtgagtggaaatgcaaagaaggagaatgg  9005600                                                                     ------------------>SPL14                                                             --------->ANAC58                                                             --------->ANAC46                                                             --------->ANAC58                                                          <---------REM1(2)       --------->HSFB2a(2)                                                          <-------TEIL        --------->ANAC46                                                        <---------SPL7     <---------ZAT18                                                       <---------ANAC58    --------->ZAT14                                                       <---------ANAC55(2) <---------ZAT14                                                       <xxxxxxxxxxxxxxxxsmallRNA(s)                                   ------->TEIL        <---------ANAC58   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                           <---------MYB46(3)          <---------ANAC46  <---------SPL7      ----------->RAV1(2) ---------->ID1              --------------->AtSPL3<---------ALFIN1     ------->TEIL      <---------AtMYB61     <------ZmHOX2a(1)    <----------DOF2 <---------HSFB2a(2) ----->GT1  <------ZmHOX2a(1)<---------MYB52(1)      <---------TGA2(2) --------------->AtSPL3   <xxxx xxxxxxxxxxxxx>smallRNA(si3)<-------GAMYB   --------->ANAC46<---------LBD16--------->SPL7<----------DOF2   aaatttgaacctgaggaaggcatctttggtcgttatgtacgcgttcaggaaaccatgacgtacacggactttgtccgtacactccgagaggctttcagtt  9005700                      --------->ATHB51                      <---------ICU4                      xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                      <--------HAHB4                     --------->ICU4                     <---------ATHB12               <xxxxxxxxxxxxxxxxsmallRNA(s)                   --------------->AGL15   ----------->HVH21                   <---------------AGL15   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                  ----------------->AGL2 ----------->GT1                              xxxxxxxxxxxxxxx                  ----------------->AGL3--------->LBD16                               xxxxxxxxxxxxxxx                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                              xxxxxxxxxxxxxxxxxx              --------->KAN4(2)        <---------ANAC58                           xxxxxxxxxxxxxxxxxxx              --------->WOX13(1)       <---------ANAC58                --------->ANAC46          <---            <------ZmHOX2a(2)          <---------ANAC46     <---------WOX13(1) ------>ZmHOX2a(1) ----           <---------ARR11(3) --------->MYB52(1) <-----------HVH21   ---------->DOF2 >>>>>>>>>EIN3   --------->ZAT18<-----------------AGL3------>NtERF2    <---------YAB1--------->ANAC58        <----- <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------LBD16  <---------At4g35610--------->DEAR3(1) <------- xxxxxxxxxxxxxxxxxxsmallRNA(l2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->ANAC58<xxxxxxxxxxxxx   tgaagtccaccgagatcaatcccataattagctactggatgccgggtgaaatgtcagtgctgatagatactaaacgccctcctgtatacattgacagtca  9005800                                   --------->ARR14(2)                                   --------->ARR11(3)                                   <---------ARR14(2)                                   <---------ARR11(3)                                  <---------GLK1(1)                                  <---------CCA1(2)                                <------MYB46(1)                                <------MYB83                               --------->MYB55(2)                                        <---------ARR14(2) xxxxxxxx>smallRNA(i2)         <---------MYB46(3)                                      <xxxxxxxxxxxxx x>smallRNA(i)                <---------ANAC46                                        --------->LBD16 xxxxx>smallRNA(fl3)          <---------MYB55(1)                   <--------ATHB1    <---------HSFB2a(2) xxxx>smallRNA(se3)         <---------MYB46(3)                     --------->YAB1<---------SPL7 ------At4g35610         <---------ANAC58                         <---------ATHB51   --------->HSFB2a(2) ----->At4g35610         --------->MYB52(2)                       <---------ATHB12  <---------LBD16 ------RAV1(2)           <---------ANAC58                   <----------DOF2     <---------ANAC58 ----HVH21               <---------ANAC46               ---------->ID1          <---------ANAC58 xxxxxxxsmallRNA(se3)   <-------TEIL  <----------DOF2   <---------CCA1(2)  --------->ZAT14   gatgggtctcgagacgttttttttggttcgtggtgggtatctttctctcaacttgttcgtctctttcaataatacagtgaaggcgttcgggaatactgtc  9005900                                <---------MYB52(1)                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                               xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            <---------At4g35610                              xxxxxxxxxxxxxxxx>smallRNA(i)                    <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     <------ZmHOX2a(1)                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <---------TOE2(3)        <xxxxx                            <---------At5g28300                      --------->YAB1           <xxxxxx                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   --------->ICU4     <xxxxxxxxxxxxx                          ----------->HVH21                       <---------ICU4       xxxxxxxxxxxxxx                      ---------->DOF2                             --------->YAB1      --------->ANAC58                     xxxxxxxxxxxxxxxx>smallRNA(i)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  xxxxxxxxxxx                    --------->HSFB2a(2)     <---------ZAT6       --------->ICU4       --------->ANAC58                    <---------HSFB2a(2)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxx xxxsmallRNA(s)  --------->GLK1(2)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  <------ZmHOX2a(1)  <   tctaggtctcatggtgaagtttctgaaagtgaccgtgtgtttgatagtgctacaaatgttgatgaaaataatgaggatgcagaggagcaagccgatgttg  9006000  Previous    Next  AGI:  At1g25784.1    Description:  transposable element gene. Mutator-like transposase family, has a 3.7e-80 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain) Range:  from: 9005544    to: 9010014    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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